LOC113536320 (LOC108256977)


Basic Information

Item Value
gene id LOC113536320
gene name LOC108256977
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 13056954 ~ 13066056 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026930194.2
CCACAACAACCCATGAAGAGTTTCATGGAGTCATTTCCAGTATGTCTGTTTTGTTCAGGGCTGGACTTGCCAGTAAAACATTCTTTCATGTCTGTTCTTGAACCTTGTGGGCACAGAGGGTAAATCACTGATTTACGTAACCATTAACTGATGTTCCCAGTAAATAACATTATATACAGGTCCTGATTGAGTTTCATTTCCAGCCCTGTGGCTCACATCAGAAGTGTATAACAAAAATTTGTCTTGTATCAGACTCTAGTCTGACTGCTATGTGCAGAAAATAAGTATTTATAGAAAGTGTGTTTGGGATCAAAGGTGTGTAGTGTATGATTAATGTTTTCCAGCTTCCTGTCTCAAGGATTTAGTAACAGCATGATTCAAAGTAATACAGACTGGTAGTAAGAGGCATTTAATGTGAAAGGAAACTGAAACTGTGGTAATTGATTATGCAATACTCCTCCTTCTCAGCAGCTCTTCCTTCTGCTAAACCTGCCTGgaaaaattcattttcatagTCAGAGAGTAAAAGTGCTGTGCTTGCAGCAACAGGCTCACGCTCTAGACCAAGGAATATCTTTTTGCACGGGGCTGTGTTTTTGGAGAAAAGCTCAAGCTGTAGACCTACAGGTATTTTGCTTCAGACTAGGATATCATCTTTAACTGACCATTCAGAATGATACGAAGGCCACCTCTGAAGAAATTAAGAGATGAAAATGAGGAGATTGTAGGATTACCTGTAGTACCTGAAAATATCAAGAATCCACCTCCAGCACATGTCGTTCAGAAGAAGCTACCCTGCCCTAAAGgtGACCCTGTAGTAGAAGTCAGGATGGCTTTGGCTATCCCTAATGAACTTGACCGCTGGATCAGGCAGCGAGGCCGAGACTTACGCCTGCGCCTGGCTGAACGACAGCCTGCTGTGAAACTGGTCAATAATCTGAGAAGGGATTTAGTGAAGTTCCTGAAGGAAAATGATGACCAACCTTTTTTCAGGGATATTTCTGTTCTCAATAGTGGAAGCTACTATGAATCTGTGAagattaataaaccCAATGAGTTTGACATCATGCTGAAAATTAAAACACCCCGAATTGTGTGGAACAAGCTAGAGAAACATAATGGACTTTTCTATTCAATTTCCCTCTGCCGACCTTCACGTGGTGAGATACGGGCATTCCTCTTAGAAGATGGACTCACTATCTCATCCtccaaaataatgaatgaaatgcaCCATTTggttcataaattcattaaaacgCATAAAGTGCCTGATGGTGAAGGTCATTGGGCCGTCTGCAGGAAAAAGGTAAATTCTCCAGCTGTGACCTTGGTATTTCTGGAGAAAAATGAGGGGGCAGAATTACTGTCTGTGGATATTGTTCCCACCCTTGAGGTGCCACAAGGCTGGCCAGAAGCTGCACGAGCCGGCCCGGGTGTGGACAACTGGCTTGGGAAGAACGTTCGGCGTAAAATTGTTGGACAGCCTGTTTACTTTGTCCCAAAGAGACCCAAAACACGAAACCTCTCTGTTACTGAAAAAGAGAGCTGGAGAATATCCTTCTCTCATATTGAAAAAGAGATAATCAGGTTCCATGGCAACAAGAAGACATGCTGTGAGAGTAAACAAAATGAATGCTGCCGAAAACTGTGTTTGCGGCTCCTGAAATGCCTGTTTGAGGGACTGAAGCAGACCTACCCCAAAGAGCTTGAGCCTCTGTGCTCCTACCATGGGAAAACTGCCTTCTTTTACAACCTCTGCGAGAGATTTGAAGACTCACTGTGGACCCCTGGCCAGCTCTCAGTCTGCTTTTTGAAACTTCTGTGGCAGTTTGAGCATGCTGTAAATGCTGGCACGCTTCCCCACTTCTTTGTTCCAGACCACAATCTGTTTTCTCCATCCAGTTTCCCCAAGCGTTCTCTTCTGTTTCTGGGCAATGCTTTGCGTGAACAGAGGGAGTCAGGGCTTCCTCTTTTGCAGGTCCCAGATCCTGTCCCAGCACTTTGCTACAGTCCTGCCCTTCAACTGCAACCTCAGCAAATTACCCcagaaccaatcacattcatcTCTCAAATGTGTGACACTGTGGCATGTGGAAACATCTATCCTATTATGCTGACTGTGGCTTGTGCTGTTATATTTTGGGCCATTGTCTATGTACTTTATATGAAAATTTGACAGCTATATTTACTGTAGATGACATCCCAATACTGTGTTTAATATATGTCaaataagaattttaaaatggagaaaacaaCTTAAAAAGAACACATTTACTATGCATGGGTTAtgttttaatgaacataatctTTCCAGTCATATGCATTCAAGTGTTTTTGAAATTGAATTTTCATGTTAGGGCAGCACAGTGGagcagtgtgtagtgctgtCACTTCACAGCTCCGGGGTTcctgattcgatcctgagctgtGTGGAATTTCTGTACGTGCtatccctgtgtctgtgtgggtttgctCCCCATCCCAGGGTTCTCAGGATAGGTTCCGAGCAGTTCCGAGCAGCCGTgtccctgaccagaataaagcggttactgaaaattaattatttttattttgatgttaATAATCTGAAAATGAGAAATTGTTCATCTATCAATATCAgttctatttcatttttattttatatgaaattatgcATTCTGAGTAAATTCTTCtaaaaaactttttgttttacatttactaTAAAACTACATGTACTATTAatgtagtaatattttataatatcatGGTCACCATACATGTAAACTTCAATACTGGTGAGAGGAATAActgcagaataaaaataaaaccacccgtctttcttcttttttgtaaaatatttgctACCAATGGACCCCTAACCTTTGCTATCTTTGGTTGATTAAAAACTGGgatatgacaaaataa
>XM_026930195.2
TAGTACCTGAAAATATCAAGAATCCACCTCCAGCACATGTCGTTCAGAAGAAGCTACCCTGCCCTAAAGGTGaCCTGTAGTAGAAGTCAGGATGGCTTTGGCTATCCCTAATGAACTTGACCGCTGGATCAGGCAGCGAGGCCGAGACTTACGCCTGCGCCTGGCTGAACGACAGCCTGCTGTGAAACTGGTCAATAATCTGAGAAGGGATTTAGTGAAGTTCCTGAAGGAAAATGATGACCAACCTTTTTTCAGGGATATTTCTGTTCTCAATAGTGGAAGCTACTATGAATCTGTGAagattaataaaccCAATGAGTTTGACATCATGCTGAAAATTAAAACACCCCGAATTGTGTGGAACAAGCTAGAGAAACATAATGGACTTTTCTATTCAATTTCCCTCTGCCGACCTTCACGTGGTGAGATACGGGCATTCCTCTTAGAAGATGGACTCACTATCTCATCCtccaaaataatgaatgaaatgcaCCATTTggttcataaattcattaaaacgCATAAAGTGCCTGATGGTGAAGGTCATTGGGCCGTCTGCAGGAAAAAGGTAAATTCTCCAGCTGTGACCTTGGTATTTCTGGAGAAAAATGAGGGGGCAGAATTACTGTCTGTGGATATTGTTCCCACCCTTGAGGTGCCACAAGGCTGGCCAGAAGCTGCACGAGCCGGCCCGGGTGTGGACAACTGGCTTGGGAAGAACGTTCGGCGTAAAATTGTTGGACAGCCTGTTTACTTTGTCCCAAAGAGACCCAAAACACGAAACCTCTCTGTTACTGAAAAAGAGAGCTGGAGAATATCCTTCTCTCATATTGAAAAAGAGATAATCAGGTTCCATGGCAACAAGAAGACATGCTGTGAGAGTAAACAAAATGAATGCTGCCGAAAACTGTGTTTGCGGCTCCTGAAATGCCTGTTTGAGGGACTGAAGCAGACCTACCCCAAAGAGCTTGAGCCTCTGTGCTCCTACCATGGGAAAACTGCCTTCTTTTACAACCTCTGCGAGAGATTTGAAGACTCACTGTGGACCCCTGGCCAGCTCTCAGTCTGCTTTTTGAAACTTCTGTGGCAGTTTGAGCATGCTGTAAATGCTGGCACGCTTCCCCACTTCTTTGTTCCAGACCACAATCTGTTTTCTCCATCCAGTTTCCCCAAGCGTTCTCTTCTGTTTCTGGGCAATGCTTTGCGTGAACAGAGGGAGTCAGGGCTTCCTCTTTTGCAGGTCCCAGATCCTGTCCCAGCACTTTGCTACAGTCCTGCCCTTCAACTGCAACCTCAGCAAATTACCCcagaaccaatcacattcatcTCTCAAATGTGTGACACTGTGGCATGTGGAAACATCTATCCTATTATGCTGACTGTGGCTTGTGCTGTTATATTTTGGGCCATTGTCTATGTACTTTATATGAAAATTTGACAGCTATATTTACTGTAGATGACATCCCAATACTGTGTTTAATATATGTCaaataagaattttaaaatggagaaaacaaCTTAAAAAGAACACATTTACTATGCATGGGTTAtgttttaatgaacataatctTTCCAGTCATATGCATTCAAGTGTTTTTGAAATTGAATTTTCATGTTAGGGCAGCACAGTGGagcagtgtgtagtgctgtCACTTCACAGCTCCGGGGTTcctgattcgatcctgagctgtGTGGAATTTCTGTACGTGCtatccctgtgtctgtgtgggtttgctCCCCATCCCAGGGTTCTCAGGATAGGTTCCGAGCAGTTCCGAGCAGCCGTgtccctgaccagaataaagcggttactgaaaattaattatttttattttgatgttaATAATCTGAAAATGAGAAATTGTTCATCTATCAATATCAgttctatttcatttttattttatatgaaattatgcATTCTGAGTAAATTCTTCtaaaaaactttttgttttacatttactaTAAAACTACATGTACTATTAatgtagtaatattttataatatcatGGTCACCATACATGTAAACTTCAATACTGGTGAGAGGAATAActgcagaataaaaataaaaccacccgtctttcttcttttttgtaaaatatttgctACCAATGGACCCCTAACCTTTGCTATCTTTGGTTGATTAAAAACTGGgatatgacaaaataa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026930194.2 True 2904 mRNA 0.41 7 13056954 13066056
XM_026930195.2 False 2166 mRNA 0.42 6 13059305 13066056

Neighbor

gene id symbol gene type direction distance location
LOC113536323 eef1a1l2,LOC108256978,LOC108426655,LOC103044302,LOC107589444,LOC107696561,LOC107706209,LOC107654701,LOC107591637 coding upstream 397 13052342 ~ 13056557 (+)
LOC113536322 eef1a1l1,LOC100526699,LOC103044018,LOC108426629,LOC107742828,LOC107654700,LOC107706208 coding upstream 4779 13048830 ~ 13052175 (+)
si:ch1073-513e17.1 LOC108257028,LOC108426616 coding upstream 20376 13030083 ~ 13036578 (+)
cap1 cap1,LOC107742832,LOC106588477 coding upstream 33140 13015272 ~ 13023814 (+)
kiaa0319l kiaa0319l,LOC106535038 coding upstream 43542 12991256 ~ 13013412 (+)
rpl11 rpl11 coding downstream 1130 13067186 ~ 13071665 (+)
eloa tceb3 coding downstream 15919 13081975 ~ 13090150 (+)
pithd1 pithd1,LOC107654704 coding downstream 24230 13090286 ~ 13094541 (+)
lypla2 lypla2,lypa2 coding downstream 29175 13095231 ~ 13102090 (+)
gatad1 gatad1 coding downstream 40807 13106863 ~ 13110701 (+)
LOC117595825 NA non-coding upstream 369741 12684133 ~ 12687213 (+)
G342629 NA non-coding upstream 377624 12679115 ~ 12679330 (+)
G342628 NA non-coding upstream 379757 12676848 ~ 12677197 (+)
G342627 NA non-coding upstream 381603 12675141 ~ 12675351 (+)
G342621 NA non-coding upstream 408237 12648495 ~ 12648717 (+)
G342735 NA non-coding downstream 80989 13147045 ~ 13147846 (+)
G342836 NA non-coding downstream 235483 13301539 ~ 13301803 (+)
G343522 NA non-coding downstream 697028 13763084 ~ 13766601 (+)
G343620 NA non-coding downstream 903178 13969234 ~ 13994319 (+)
G343671 NA non-coding downstream 1010401 14076457 ~ 14078541 (+)
si:ch211-199g17.2 NA other upstream 102229 12904623 ~ 12954725 (+)
LOC113536228 nobox other upstream 264481 12785837 ~ 12792473 (+)
fabp3 fabp3,LOC106570598,LOC108426441,LOC105892250,LOC107742844,LOC107669374 other upstream 361442 12692007 ~ 12695512 (+)
sostdc1b LOC108257373 other upstream 1241681 11810109 ~ 11815273 (+)
dlgap3 dlgap3 other upstream 1583631 11314530 ~ 11473323 (+)
G342718 klhl43,LOC108256975,LOC108426671,LOC107591641,LOC107742826,LOC107696549,LOC107589442,LOC107706211 other downstream 11114 13077170 ~ 13081229 (+)
slc30a8 slc30a8,slc30a2,rprd1a,LOC108256818,LOC107754284,LOC107696534,LOC107696508,LOC106570487,LOC107654669,LOC107592974 other downstream 1139665 14205721 ~ 14231844 (+)
med30 med30,LOC107706236,LOC107754270,LOC107654723 other downstream 1167461 14233517 ~ 14250931 (+)
tnrc18 tnrc18,LOC107581723,LOC107742388 other downstream 2292737 15358793 ~ 15421748 (+)
G344364 actb2,actb,actbb,actb1,LOC102799139,LOC103039558,LOC107581721 other downstream 2368066 15434122 ~ 15484581 (+)

Expression


Co-expression Network