laptm4b (laptm4b,LOC103028646,LOC107724295,LOC107702097,LOC107565197)


Basic Information

Item Value
gene id laptm4b
gene name laptm4b,LOC103028646,LOC107724295,LOC107702097,LOC107565197
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 8082902 ~ 8094663 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026930202.2
ATCCCCGCTGTCCGGTCACGTGACCAGGGGATGAGCCGAATTAATGCTGaggcacagagccctgaacacACGACGCACTGGATGCTTACACTCTGAATACCGCACTGCAAACCCTCGCCATTACATCTCTGAGAGGCCTACATGAAATAACTGCACCTCGTTCTGAAGCAGGAAGATGATTTCGCCGTGGGACAGATGGTACACGACGAGCTGCTGCCTTTGTTGTCATGTACGGACGGGAACCATTATCCTCGGCGTCTGGTACATGCTCATCAATGCCGTGGTGCTGTTAATCCTGCTGTCTGCTCTAAACGACCCAGTGCAGTATCACTACCACCTCACCAGTGCCGAACTTGGCACAGACTTGGATGTCATGGATGACGCAAACATGTGCATCGCTGCTGCAATTTCCCTGCTGATGATATTGATTTGTGGGATGGCGACCTATGGTGCTTATAAGCAACATGCTGCTTGGATTATTCCATTTTTCTGCTACCAAATCTTTGATTTTGCCCTTAACACCCTGGTAGCAATTAGTGTCATGGTTTACCCGAACACCATTCAGGATTACCTTGAGCAGCTGCCTGGGACCTTTCCATACAAAGACGACTTAATGTCCACCAACAATATATGCCTAGTGTTCGCAGTACTTGTCTTCATCGGCTGTATTCTGGCCTTTAAGGCTTACCTGATTGCCTGTGTGTGGAACTGCTACAGATACGTTAGTGGAAGAGGCACCACAGAGGTCTTGGTTTATGTCACCACTAATGATACAACAGTGCTGCTCCCATCCTATGAAGAGGTTGTTGCAATTCCGCCGAAGGAGCCACCCCCTGAGTAAATCTCAACATGAGACggatgttttctctctctgactcctTCAGTCTTCTCCATATATATCCTCCAAAGAAAAGCTTTTTCTGTCAGTGTTTCCTATTTCCCCACTCGAGCCTTCCACTTTTTACTCTGTGACATGTCTATCCTTTGCTCCCTGAAGGCAGTAGTGTGACTTGCTTTTCCCTCTGCGAGTCTTCACAGCCTTCCTGGCAACAGTGCTGCGTGTCAGCTCCAATTTGGATTTGCACTTTCAGCGTTCAGTCGTTATGCACAGCACTGACCTCcccttttttaaatactgtgaaCTTCTCAGCACTGCTGTTGGCTACTGAAATACCTGACATATAAATGTGGCAGGTGTAATAAACATGCGAGTTACTTAAGAGCACTTTCCGACTGGCAGTTTTCCCAGGAACCTGATGAATGTGGCAGCCagggtaatatatatatacaaatacatcTTTATATTAACAATGAATTGTGAGAATTGTGAGAAGATCCTGAATGACCAGTCTACAACATCTTAAACAGGTTTATACCAACAGTAGCCAATATTTAATGCAATTTCAAAGttactaataaaaatacatttcagataATTTCCTAGTGATGGGTTAACAGAAACATTTTGCAAGTATTCCAAATTTGAGATGagatatagtgtatatagttgcagtttaatgaaaaacaagGATACAGGTTTAAATGTGAAAGTAATCTAGTCATTTTCACAACATTatcttcattatttttcatatagAATATCTGAATATGGCTATTTCACACACTGCCCTGTAttgctgattttatttaaaaccataCATCCAGTTGCTACCGGTCCTATGCAGAGTCGCCACATTGTTTTTGCACATAAGTCTTAATAATTCATGTTGTACGTTCTCTGATAGATAATGAAGGAAAGTTATAGACTGTATGTAGCACAGTAATGTAGTACTGCTATTACACAGCCGTGTATGGGTCTGAATATAGGTGACATGAACAATCTCCTGAAGTCTTCCCTAGCTTAATTCTGCTTAAGATTTGAAAATGAATTTGTTAATGTTATATAAAGATCTATGCAACAACTATGCAGAATTATGTTAAATTGTACTGCGTTTCAACACCGAGCACTTTAGTATCGATGCCTTAAATGAAGCCTGCAGACTCTCGGTCACTGCTCTGGTTATATTATTTCCCCTGAATTTGCATTTTCCATTTACCGGTTATTTATAGTGTTCACTTGTCTAGCTGATTTCTGTAATTATTCATTGGGAGCTGTCCTCCTTGCTTTATGTAGCTCTAGGGTGCAATGGAAGGAAATTTGCTAATTAGTAAATAACAAAAAGGGGGGACAAAAATCTTACAAAACTACCAACAATCTATAGATAAACCAATGGTTTTTACATTGTTGCTACATTttatacactgaatacattgATCACATCTCTCAGAGCTCTTAAACTATATAAACCAGTGACAGAATGTCTGTCTGCTCCAGTTAAGCATTCCATACAAAAGAGCTGTGGGTTGAAACGTAGTAAAATATCGCTATGAACAACCTGCAGTAACCACGTTTGCCGTTTCCTTGTCATGAACCAGATCGTTATTCAGATTCAATCATTTTGTCCTGTGATGTGTTTAGGCTCCTAAAATCTAACATTATAACCTGATCCAGTTAATCACCTTAAATTTCTGAGTGTGTAATATGTTTGCTTAGAAAAAAATAGTCAGTTCTGAAATTTCTTACTGGTTTTTACTGTTGGTTGTATGTTTTGTCTGTAATTGAGATGATTCGAACTTGATGTTCTATCAGCTGCAATATTTGTACTGAACAgttcttaaaattaaaagaatCTCATGTTGA

Function

symbol description
laptm4b Predicted to be located in cell projection; multivesicular body membrane; and plasma membrane. Predicted to be integral component of membrane. Predicted to be active in lysosomal membrane. Is expressed in epiphysis; otic placode; otic vesicle; and retina. Orthologous to human LAPTM4B (lysosomal protein transmembrane 4 beta).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K12387 LAPTM; lysosomal-associated transmembrane protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026930202.2 True 2701 mRNA 0.40 7 8082902 8094663

Neighbor

gene id symbol gene type direction distance location
mtdha mtdh coding upstream 2049 8070868 ~ 8080853 (+)
rrm2b rrm2b,LOC108256937,LOC108425040,LOC107702093,LOC107565196,LOC107556385,LOC107724293 coding upstream 13496 8063574 ~ 8069406 (+)
azin1b azin1b,LOC108256938,LOC108425019 coding upstream 21232 8052070 ~ 8061670 (+)
LOC113535936 LOC108270576,LOC108256939,LOC108270587 coding upstream 35651 8043612 ~ 8047251 (+)
LOC113536206 LOC108256941,LOC108410903,LOC107717718 coding upstream 54862 8020801 ~ 8028040 (+)
si:dkey-284p5.3 NA coding downstream 7183 8101846 ~ 8105968 (+)
nt5c1aa 5nt1a,LOC108425118,LOC107653825,LOC107710055,LOC107702103,LOC107724290 coding downstream 27366 8122029 ~ 8136818 (+)
hpca hpca,LOC108425130,LOC107556378,LOC107702105,LOC105005722 coding downstream 73554 8168217 ~ 8200794 (+)
zgc:91944 zgc:91944,LOC108257190,LOC108425172,LOC103026000,LOC107710043,LOC107724285,LOC107702106 coding downstream 127497 8222160 ~ 8235736 (+)
zbtb8b zbtb8b coding downstream 206527 8301190 ~ 8308111 (+)
G340047 NA non-coding upstream 84614 7998083 ~ 7998288 (+)
G339965 NA non-coding upstream 193888 7888704 ~ 7889014 (+)
G339830 NA non-coding upstream 269038 7813632 ~ 7813864 (+)
LOC113535942 NA non-coding upstream 310446 7764753 ~ 7772456 (+)
G339804 LOC108256927,LOC108262328,LOC108441690 non-coding upstream 408247 7672980 ~ 7674655 (+)
G340056 rpl30,LOC107710097,LOC107556383 non-coding downstream 2506 8097169 ~ 8100677 (+)
G340146 NA non-coding downstream 139204 8233867 ~ 8237952 (+)
G340197 NA non-coding downstream 304555 8399218 ~ 8411358 (+)
G340248 LOC108256763,LOC108425228,LOC103022454,LOC106515840,LOC107724303,LOC107087831,LOC107584252 non-coding downstream 395016 8489679 ~ 8491914 (+)
G340257 NA non-coding downstream 518823 8613486 ~ 8617041 (+)
G339324 NA other upstream 1365756 6711015 ~ 6717146 (+)
mturn mturn,LOC107559763,LOC107572558 other upstream 1466879 6604605 ~ 6616023 (+)
LOC113535938 tmem196,LOC106588729,LOC107667578,LOC107568813,LOC107755951,LOC107571147,LOC107655099 other upstream 1738993 6333989 ~ 6343909 (+)
stxbp2 stxbp2,LOC107670524,LOC107587946,LOC107711254,LOC107757364 other upstream 3302516 4761313 ~ 4780386 (+)
LOC113546199 pet100,LOC107672445,LOC107563330,LOC107587949 other upstream 3320300 4757814 ~ 4762602 (+)
LOC113536074 LOC108257189,LOC108257413 other downstream 146034 8240697 ~ 8271499 (+)
G340208 LOC108256789 other downstream 188297 8282960 ~ 8285204 (+)
sem1 NA other downstream 818265 8912928 ~ 8915846 (+)
sgce sgce,LOC107722147,LOC107669779,LOC107665667,LOC107731676 other downstream 1024351 9119014 ~ 9134179 (+)
bet1 bet1,LOC107669829,LOC107722155 other downstream 1129941 9224604 ~ 9229638 (+)

Expression


Co-expression Network