cx30.9


Basic Information

Item Value
gene id cx30.9
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 11275826 ~ 11283228 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026930215.2
CGTCAAACAAAAAAGGGAGAGGCTCGGGCACCTGCCCTGTTTCAGATTTCTGTCGTATGGCATTTTAACAAGATCATACAGGAGCTGTCTCCTGACCTCAGTGGTGAGTAAGCTGCCAACCTCCAGCTGAAGAGATGAACTGGTTATTCCTGGAGTCCCTGCTCAGCGGCGTGAACAAATACTCCACCGTTTTTGGTCGTGTCTGGCTCTCTATGGTCTTTATCTTccgtgtgttggtgtttgtggtgGCCGCGCAGCCAGTTTGGGGAGACGATTCAAAAGACTTTGTGTGCAACACAATTCAGCCAGGTTGCACTACTGTGTGCTATGACCACACTTTCCCAATCTCTCATACCCGCTTGTGGGCGCTTCAGCTCATCTTAATAACCTGCCCATCTCTCATGGTGGTGGGCCACGTCAAGTTCCGCGAAAAGAAGAATCAAAATACTGCCACCACTCAGGAAGGCAAATATCTGTATGCCAACCCGGGAAAGAAGCGTGGTGGCCTCTGGTGGACCTATTTGCTTAGTCTGATATTTAAAGCAGTCATTGATGCTGGCTTCCTCTGCATCCTGTACTATATCTATAAAGGATTTGACTTGCCAACTCTGACAAAATGTAGTCTCAATCCATGCCCTAATGTGGTGGACTGCTACCTGTCCCGTCCTACAGAAAAGAGGATCTTCACTATTTTTATGGTTGCCTCCTCTGCCCTGTGTATCCTCACGTGTATCATTGAGATGAGCTACCTGGTGTGTAAGCGCTGTAACAAGGTGGTTCATGAACAAATAGAGCAAGAGCGCATGCGATTTGTTCAGCAGCATGAACTGAGGGCTCTTTCCCAATCAAAGTTTGAGTGTAGAGTGGATCCTACTGCTTCCTCCAAAAACAGCCTCAGCAGTCTGAAAAAAGACATGACTGCTAGCAAAATCAGTTAGTGTCGCTGCTGTGTCTGGAGTCCTTTACACATGAGAGACGGTGATTTCAGAAGCTGTAGTTATACAGTTGACATAATGTGAAAGACATTAAAGGTGTTGCATGCTTTACAGTCATATGAACTGCAAAATAATCCTGTACAATAATCAAAGAAGGTATCATTCTATTGAAAAATATCTGGCGTCTTTGTTATGTCTGTTATACTGGGATTAAAAGGCCTAAGGATCATTAAGGCCATCATTTTAGCAAATACTGTGCTGAGACATCTTCTGC
>XM_034298839.1
CGGTTTCACCTGTGGTATCATTCTCTGAactttttcattctcttttatttcatcatttatgtTCATCCAGGACacattatttatGAGCTGTCTCCTGACCTCAGTGGTGAGTAAGCTGCCAACCTCCAGCTGAAGAGATGAACTGGTTATTCCTGGAGTCCCTGCTCAGCGGCGTGAACAAATACTCCACCGTTTTTGGTCGTGTCTGGCTCTCTATGGTCTTTATCTTccgtgtgttggtgtttgtggtgGCCGCGCAGCCAGTTTGGGGAGACGATTCAAAAGACTTTGTGTGCAACACAATTCAGCCAGGTTGCACTACTGTGTGCTATGACCACACTTTCCCAATCTCTCATACCCGCTTGTGGGCGCTTCAGCTCATCTTAATAACCTGCCCATCTCTCATGGTGGTGGGCCACGTCAAGTTCCGCGAAAAGAAGAATCAAAATACTGCCACCACTCAGGAAGGCAAATATCTGTATGCCAACCCGGGAAAGAAGCGTGGTGGCCTCTGGTGGACCTATTTGCTTAGTCTGATATTTAAAGCAGTCATTGATGCTGGCTTCCTCTGCATCCTGTACTATATCTATAAAGGATTTGACTTGCCAACTCTGACAAAATGTAGTCTCAATCCATGCCCTAATGTGGTGGACTGCTACCTGTCCCGTCCTACAGAAAAGAGGATCTTCACTATTTTTATGGTTGCCTCCTCTGCCCTGTGTATCCTCACGTGTATCATTGAGATGAGCTACCTGGTGTGTAAGCGCTGTAACAAGGTGGTTCATGAACAAATAGAGCAAGAGCGCATGCGATTTGTTCAGCAGCATGAACTGAGGGCTCTTTCCCAATCAAAGTTTGAGTGTAGAGTGGATCCTACTGCTTCCTCCAAAAACAGCCTCAGCAGTCTGAAAAAAGACATGACTGCTAGCAAAATCAGTTAGTGTCGCTGCTGTGTCTGGAGTCCTTTACACATGAGAGACGGTGATTTCAGAAGCTGTAGTTATACAGTTGACATAATGTGAAAGACATTAAAGGTGTTGCATGCTTTACAGTCATATGAACTGCAAAATAATCCTGTACAATAATCAAAGAAGGTATCATTCTATTGAAAAATATCTGGCGTCTTTGTTATGTCTGTTATACTGGGATTAAAAGGCCTAAGGATCATTAAGGCCATCATTTTAGCAAATACTGTGCTGAGACATCTTCTGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026930215.2 False 1209 mRNA 0.45 2 11280546 11283228
XM_034298839.1 True 1212 mRNA 0.44 2 11275826 11283228

Neighbor

gene id symbol gene type direction distance location
LOC113536281 NA coding upstream 197389 11057105 ~ 11078437 (+)
angpt2b LOC108256759,LOC108425532 coding upstream 655653 10597416 ~ 10620173 (+)
wdyhv1 wdyhv1 coding upstream 1085510 10187693 ~ 10190316 (+)
ccn4a wisp1,LOC108425715,LOC107670277,LOC107724346 coding upstream 1121635 10147649 ~ 10154191 (+)
abitram fam206a,LOC107710376,LOC107556369,LOC107556344 coding upstream 1227939 10042424 ~ 10047887 (+)
pef1 pef1,LOC107664714,LOC107726139,LOC107712637,LOC107698987 coding downstream 1305 11284533 ~ 11291582 (+)
fam49al fam49a,LOC108257369,LOC103035846,LOC107691525,LOC106589091,LOC105892259,LOC105006285,LOC101166565 coding downstream 258275 11541503 ~ 11569943 (+)
mfsd2ab mfsd2a,LOC107687081,LOC107724351,LOC107568806,LOC107584275,LOC107709268,LOC107691531 coding downstream 407209 11690437 ~ 11705117 (+)
yars1 yars,LOC107687080,LOC107691530,LOC107724337,LOC107709269 coding downstream 423430 11706658 ~ 11715821 (+)
sync sync coding downstream 485742 11768970 ~ 11773563 (+)
G341449 NA non-coding upstream 817683 10437404 ~ 10458143 (+)
LOC113536353 NA non-coding upstream 821034 10449436 ~ 10454792 (+)
G341445 NA non-coding upstream 824264 10450465 ~ 10451562 (+)
LOC117595845 NA non-coding upstream 827871 10446328 ~ 10447955 (+)
G341469 NA non-coding upstream 875959 10398953 ~ 10399867 (+)
G341894 NA non-coding downstream 35527 11318755 ~ 11319077 (+)
G341890 NA non-coding downstream 101808 11385036 ~ 11473979 (+)
G342067 NA non-coding downstream 300414 11583642 ~ 11583855 (+)
G342079 NA non-coding downstream 305790 11589018 ~ 11589225 (+)
G342190 bzw2,LOC107724358,LOC107568798 non-coding downstream 499038 11782266 ~ 11784980 (+)
G341451 col8a2,LOC107565043,LOC107710560 other upstream 793856 10474483 ~ 10481970 (+)
zgc:91910 zn706,LOC108425704,LOC107653862,LOC101168967,LOC107556412,LOC104931588,LOC107710523,LOC107670289 other upstream 1078824 10193747 ~ 10197002 (+)
bet1 bet1,LOC107669829,LOC107722155 other upstream 2046188 9224604 ~ 9229638 (+)
sgce sgce,LOC107722147,LOC107669779,LOC107665667,LOC107731676 other upstream 2141647 9119014 ~ 9134179 (+)
sem1 NA other upstream 2359980 8912928 ~ 8915846 (+)
smim12 smim12,LOC107726140,LOC107664707,LOC107698988,LOC107563281 other downstream 9063 11292291 ~ 11294356 (+)
dlgap3 dlgap3 other downstream 31302 11314530 ~ 11473323 (+)
sostdc1b LOC108257373 other downstream 526881 11810109 ~ 11815273 (+)
fabp3 fabp3,LOC106570598,LOC108426441,LOC105892250,LOC107742844,LOC107669374 other downstream 1408779 12692007 ~ 12695512 (+)
LOC113536228 nobox other downstream 1502609 12785837 ~ 12792473 (+)

Expression


Co-expression Network