LOC113546190 (LOC108257430)


Basic Information

Item Value
gene id LOC113546190
gene name LOC108257430
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 4599150 ~ 4611600 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026945952.2
CAGTAACGCAGTGTGTCACCCGCCATGAGGCAAGAAAAAGACAGCGAAGAAGAAAGAAGGCGTTTGTTATTGACAGCGCGCGAAAGAAAAATGGCGGAGCTACAAAATGAAAGGTGTCAGAGAGACCACGGGCTTGACACGGGTACAGCAGAGGACATTTCACAAGGGACCAAAAGACAATTAGACAGAACCCAGAGTCCAGAACCTCCACCGAAGTCTCCTCGCACTTCATCTCCCCCTGCAGTCGTCGCTCTTTTAGAAGAGAAACAGCCAGAAGACCAAGATTCAGCTCGTGCAGACGTCACACCGAGAGAGACGATGACTGAAGCATGTGCTGCTCCTGATCTCAGCCCTCGCTCGCGGAGAAAATCCTGGAGGAGGTCGACTAGAGGCAGGGCGTCGCTCCCTGCCCTCCCCAACACCTCCCAGTCTCTGTGTAAATCCATCAGCCTGGACCTGAGTGATGAAGAGAGGCTGGAGAAGCTCATGGAAGCTGCAATGCAGGTTACAGTGAAGAGGCTGCAAAACACACTGTGTACCATCCCTGGTGCTGATTTGGAAGCGTTTCAAGCACAAGttGACTCCCTGCAGACTGAGTGGGCGAGTATGGCTAAAACCATTAGTGAAGAAAGTCAGCTGGCATTCTCCAGCACCAGCAGCGATCCTGCTATTCAGAAAGCCATCGAACGTGCAAAAGAGGACCTGAACAGGCTGCAGGCTGAGAGTTTGTCCTGGGAGTCGCTCCTAAATAAACATCGCTCCAGAGCGGAGGAGTTGGCCAAaagagtggaggagggACAGGAGAGAGGTGTGAAGCTGGACCCGTCCTGCCTCGCTCAGTCCTCTCAGAGCAAACTCATCCTGAATAAACCCGATTACCACGCAGTGCtgcagagacagcagagagTCCTCAACACTATGGAGCTGGtgTTGGAGTCTCAGTGCATGATGATGAGGGCGCTCCTGTCCTTCCAGGAGGACTCTCAGTCACTGGTGAAGGAGACCAGCGCCCGTCTGGctCAAAGTGCAGGATTCCAGGATCTCCCATCATCCCCGGTGAAGACGCTCCTAAACCTCCCTCAGTCTGCCACTTCATCTTAGTTGAGGTTCTACAGCATTCTCAATACACCTCAATAGACCTGTCCATTTTACCAGGACAATAAATTCAGTTTAACTGGACAGTGTGACGTGAATATAAATAACGATACACAAAGACCTGACCATAACATTACAGTCTAGTTGTGCTAATTATGCATCAACAAAACACCAGGACCGTTATGGAAAATACATTTAGCATGTAAATAGTTTACGTTATGTTGCTTCTTTAACTATTGTTATTCAGTGATACTCTTTTCtactcagaaaagtgtatcataCTGGTGTTATATCGTGAAATCAGTATTGTGTTCTCATATCGCCCAGCTGTAGTCTGTGTTTTGTATCTTTATACACCTTTCTTTTCTCGAGGGGGCCAAAAAAATGTCGTTGGTAAACATGTACATGTTTAAATCTTTAGTTAAATCATTTGAAAGGTGTCACGTTGAGAGCTGAAGGCTTTGCTGTTTAAAATGGAGTGTCATTGCCAGTGTCATCTGTTCCCTAAATGTGTTACATAATTATATACTCATTATAACAGCAGGTAATCATTACCAGAGATAAATTGCAGCAGCATTTCATGAAAACTGTTTGACACTAGATGGCAGTGTGATTCATTTATAACCCAAATAATACAACTCCATATTACATGTGACTTGTTTACCTGAGTTCCATTATTGTTGGTTTTCTCAAACATCAGCTCAAATATTAGTTTTAAGAGAGATGGATATGGAAAGATGTGCACAGATTTTTACtatgaaatgaaatgctttggctttacatgttttttttttttttttcttcttctttttctccccatCTTTCTTTAAACTACAGGTTCCCAATCCTGGTCCTGGAAAacatgttttagtgtttttctctGCTCTTAACATTTCAGAAAGGGCTGTTATAAATCACAAATATGCAGGACACTGGGGTGttccaggaccagggctggaaACCTGTGCTTTGTATTAATTATATCCGACTTAACACTGTTTGATTTGCAGCCCGATTTTGCAGTCACAGACAAAAATCTCACATTGTAAAAGAATTCATGAAATCCAAGGTCTTAGAATGAATAATGTGACATGCTcgatttagtgccattgcaaCTAAAGGCGGCCGACGACAACTTCCTGGCAAtgttggaaatttttttttattaaaatctcggAATGTGAGTTCTGCTATGATGATCATCTCAAACCTGCCAATAAGAGGACTGTACAGGTTGATGCAAAACTCACAGTACAGCTACGAATACGGTAGCAGCAATGGCTTAAAACGTAAACGAaacatgcaaatgaaaaaaatccttGACCATTTCTATTTACGTGAGCCTGGATCAGCCTGAGTCATGATATAATCtgtaatcacaggtctatcgttagaggatcttcattgtataatctgagATACAAAACACATGATGACGTTATAGAATTCAGCCGAAGTTAATCTTAAAGTTAATCGTAAATGACCGCAGTGTAAAAAAGGTTTAAGCCAAGTAGAATGGCTATTTTATTTCCCAGCTCTGGTCCTGGAGAATCCCCTGTcctgcatatttgtgttttccctgctcaactgaatcaggtgtgttagagcagagaaagcTAGCAAACATTCAGGACTAGGATTGAGAATCTGTACTTCAGACAGATTTAGTGGGgaaatggtggcacagtggttaAGGGGTTAGGGCTGTTGAGCcaaaggtcatgagttcaaatcccagcagcaGCATGGGTTCTTGAACAAGACTTGTAACCCTCCAACTACTCAATTGTATCCTGTCTCGATTGTAAGTCTCTTTGGAAATGAGTAAACAAAGGCTAGTACatgactgaaaagaaaaaaaaaaagttttccactCTTTGATAGCATCCAGTCTTATGTTTAGGTCTATAAGTGTCATGGTGTATTAATGATCTGTGCGGATTTCCTGACTTGTTTCCTGTTCTGTTGAACGCTGCCTTCTAACATTCATAAATAAACTATTGCTCATTCG
>XM_034298325.1
GAAAAATGGCGGAGCTACAAAATGAAAGGTTTGAGCTGTGTCAGAGAGACCACGGGCTTGACACGGGTACAGCAGAGGACATTTCACAAGGGACCAAAAGACAATTAGACAGAACCCAGAGTCCAGAACCTCCACCGAAGTCTCCTCGCACTTCATCTCCCCCTGCAGTCGTCGCTCTTTTAGAAGAGAAACAGCCAGAAGACCAAGATTCAGCTCGTGCAGACGTCACACCGAGAGAGACGATGACTGAAGCATGTGCTGCTCCTGATCTCAGCCCTCGCTCGCGGAGAAAATCCTGGAGGAGGTCGACTAGAGGCAGGGCGTCGCTCCCTGCCCTCCCCAACACCTCCCAGTCTCTGTGTAAATCCATCAGCCTGGACCTGAGTGATGAAGAGAGGCTGGAGAAGCTCATGGAAGCTGCAATGCAGGTTACAGTGAAGAGGCTGCAAAACACACTGTGTACCATCCCTGGTGCTGATTTGGAAGCGTTTCAAGCACAAGttGACTCCCTGCAGACTGAGTGGGCGAGTATGGCTAAAACCATTAGTGAAGAAAGTCAGCTGGCATTCTCCAGCACCAGCAGCGATCCTGCTATTCAGAAAGCCATCGAACGTGCAAAAGAGGACCTGAACAGGCTGCAGGCTGAGAGTTTGTCCTGGGAGTCGCTCCTAAATAAACATCGCTCCAGAGCGGAGGAGTTGGCCAAaagagtggaggagggACAGGAGAGAGGTGTGAAGCTGGACCCGTCCTGCCTCGCTCAGTCCTCTCAGAGCAAACTCATCCTGAATAAACCCGATTACCACGCAGTGCtgcagagacagcagagagTCCTCAACACTATGGAGCTGGtgTTGGAGTCTCAGTGCATGATGATGAGGGCGCTCCTGTCCTTCCAGGAGGACTCTCAGTCACTGGTGAAGGAGACCAGCGCCCGTCTGGctCAAAGTGCAGGATTCCAGGATCTCCCATCATCCCCGGTGAAGACGCTCCTAAACCTCCCTCAGTCTGCCACTTCATCTTAGTTGAGGTTCTACAGCATTCTCAATACACCTCAATAGACCTGTCCATTTTACCAGGACAATAAATTCAGTTTAACTGGACAGTGTGACGTGAATATAAATAACGATACACAAAGACCTGACCATAACATTACAGTCTAGTTGTGCTAATTATGCATCAACAAAACACCAGGACCGTTATGGAAAATACATTTAGCATGTAAATAGTTTACGTTATGTTGCTTCTTTAACTATTGTTATTCAGTGATACTCTTTTCtactcagaaaagtgtatcataCTGGTGTTATATCGTGAAATCAGTATTGTGTTCTCATATCGCCCAGCTGTAGTCTGTGTTTTGTATCTTTATACACCTTTCTTTTCTCGAGGGGGCCAAAAAAATGTCGTTGGTAAACATGTACATGTTTAAATCTTTAGTTAAATCATTTGAAAGGTGTCACGTTGAGAGCTGAAGGCTTTGCTGTTTAAAATGGAGTGTCATTGCCAGTGTCATCTGTTCCCTAAATGTGTTACATAATTATATACTCATTATAACAGCAGGTAATCATTACCAGAGATAAATTGCAGCAGCATTTCATGAAAACTGTTTGACACTAGATGGCAGTGTGATTCATTTATAACCCAAATAATACAACTCCATATTACATGTGACTTGTTTACCTGAGTTCCATTATTGTTGGTTTTCTCAAACATCAGCTCAAATATTAGTTTTAAGAGAGATGGATATGGAAAGATGTGCACAGATTTTTACtatgaaatgaaatgctttggctttacatgttttttttttttttttcttcttctttttctccccatCTTTCTTTAAACTACAGGTTCCCAATCCTGGTCCTGGAAAacatgttttagtgtttttctctGCTCTTAACATTTCAGAAAGGGCTGTTATAAATCACAAATATGCAGGACACTGGGGTGttccaggaccagggctggaaACCTGTGCTTTGTATTAATTATATCCGACTTAACACTGTTTGATTTGCAGCCCGATTTTGCAGTCACAGACAAAAATCTCACATTGTAAAAGAATTCATGAAATCCAAGGTCTTAGAATGAATAATGTGACATGCTcgatttagtgccattgcaaCTAAAGGCGGCCGACGACAACTTCCTGGCAAtgttggaaatttttttttattaaaatctcggAATGTGAGTTCTGCTATGATGATCATCTCAAACCTGCCAATAAGAGGACTGTACAGGTTGATGCAAAACTCACAGTACAGCTACGAATACGGTAGCAGCAATGGCTTAAAACGTAAACGAaacatgcaaatgaaaaaaatccttGACCATTTCTATTTACGTGAGCCTGGATCAGCCTGAGTCATGATATAATCtgtaatcacaggtctatcgttagaggatcttcattgtataatctgagATACAAAACACATGATGACGTTATAGAATTCAGCCGAAGTTAATCTTAAAGTTAATCGTAAATGACCGCAGTGTAAAAAAGGTTTAAGCCAAGTAGAATGGCTATTTTATTTCCCAGCTCTGGTCCTGGAGAATCCCCTGTcctgcatatttgtgttttccctgctcaactgaatcaggtgtgttagagcagagaaagcTAGCAAACATTCAGGACTAGGATTGAGAATCTGTACTTCAGACAGATTTAGTGGGgaaatggtggcacagtggttaAGGGGTTAGGGCTGTTGAGCcaaaggtcatgagttcaaatcccagcagcaGCATGGGTTCTTGAACAAGACTTGTAACCCTCCAACTACTCAATTGTATCCTGTCTCGATTGTAAGTCTCTTTGGAAATGAGTAAACAAAGGCTAGTACatgactgaaaagaaaaaaaaaaagttttccactCTTTGATAGCATCCAGTCTTATGTTTAGGTCTATAAGTGTCATGGTGTATTAATGATCTGTGCGGATTTCCTGACTTGTTTCCTGTTCTGTTGAACGCTGCCTTCTAACATTCATAAATAAACTATTGCTCATTCG
>XM_034298326.1
CACAacaggttttttgtttgtttgtttgttttttacacatTCTAATACGTTTTACTAATTAGCCCGTTTATTTCGCTGTTATTAAACCTAGCTGTAGGTATTTGCTAGCTTTACTGATGTCTCTAAAATGTCTGCCAGGCCATGTAAATGATTAAACAGGTGTCAGAGAGACCACGGGCTTGACACGGGTACAGCAGAGGACATTTCACAAGGGACCAAAAGACAATTAGACAGAACCCAGAGTCCAGAACCTCCACCGAAGTCTCCTCGCACTTCATCTCCCCCTGCAGTCGTCGCTCTTTTAGAAGAGAAACAGCCAGAAGACCAAGATTCAGCTCGTGCAGACGTCACACCGAGAGAGACGATGACTGAAGCATGTGCTGCTCCTGATCTCAGCCCTCGCTCGCGGAGAAAATCCTGGAGGAGGTCGACTAGAGGCAGGGCGTCGCTCCCTGCCCTCCCCAACACCTCCCAGTCTCTGTGTAAATCCATCAGCCTGGACCTGAGTGATGAAGAGAGGCTGGAGAAGCTCATGGAAGCTGCAATGCAGGTTACAGTGAAGAGGCTGCAAAACACACTGTGTACCATCCCTGGTGCTGATTTGGAAGCGTTTCAAGCACAAGttGACTCCCTGCAGACTGAGTGGGCGAGTATGGCTAAAACCATTAGTGAAGAAAGTCAGCTGGCATTCTCCAGCACCAGCAGCGATCCTGCTATTCAGAAAGCCATCGAACGTGCAAAAGAGGACCTGAACAGGCTGCAGGCTGAGAGTTTGTCCTGGGAGTCGCTCCTAAATAAACATCGCTCCAGAGCGGAGGAGTTGGCCAAaagagtggaggagggACAGGAGAGAGGTGTGAAGCTGGACCCGTCCTGCCTCGCTCAGTCCTCTCAGAGCAAACTCATCCTGAATAAACCCGATTACCACGCAGTGCtgcagagacagcagagagTCCTCAACACTATGGAGCTGGtgTTGGAGTCTCAGTGCATGATGATGAGGGCGCTCCTGTCCTTCCAGGAGGACTCTCAGTCACTGGTGAAGGAGACCAGCGCCCGTCTGGctCAAAGTGCAGGATTCCAGGATCTCCCATCATCCCCGGTGAAGACGCTCCTAAACCTCCCTCAGTCTGCCACTTCATCTTAGTTGAGGTTCTACAGCATTCTCAATACACCTCAATAGACCTGTCCATTTTACCAGGACAATAAATTCAGTTTAACTGGACAGTGTGACGTGAATATAAATAACGATACACAAAGACCTGACCATAACATTACAGTCTAGTTGTGCTAATTATGCATCAACAAAACACCAGGACCGTTATGGAAAATACATTTAGCATGTAAATAGTTTACGTTATGTTGCTTCTTTAACTATTGTTATTCAGTGATACTCTTTTCtactcagaaaagtgtatcataCTGGTGTTATATCGTGAAATCAGTATTGTGTTCTCATATCGCCCAGCTGTAGTCTGTGTTTTGTATCTTTATACACCTTTCTTTTCTCGAGGGGGCCAAAAAAATGTCGTTGGTAAACATGTACATGTTTAAATCTTTAGTTAAATCATTTGAAAGGTGTCACGTTGAGAGCTGAAGGCTTTGCTGTTTAAAATGGAGTGTCATTGCCAGTGTCATCTGTTCCCTAAATGTGTTACATAATTATATACTCATTATAACAGCAGGTAATCATTACCAGAGATAAATTGCAGCAGCATTTCATGAAAACTGTTTGACACTAGATGGCAGTGTGATTCATTTATAACCCAAATAATACAACTCCATATTACATGTGACTTGTTTACCTGAGTTCCATTATTGTTGGTTTTCTCAAACATCAGCTCAAATATTAGTTTTAAGAGAGATGGATATGGAAAGATGTGCACAGATTTTTACtatgaaatgaaatgctttggctttacatgttttttttttttttttcttcttctttttctccccatCTTTCTTTAAACTACAGGTTCCCAATCCTGGTCCTGGAAAacatgttttagtgtttttctctGCTCTTAACATTTCAGAAAGGGCTGTTATAAATCACAAATATGCAGGACACTGGGGTGttccaggaccagggctggaaACCTGTGCTTTGTATTAATTATATCCGACTTAACACTGTTTGATTTGCAGCCCGATTTTGCAGTCACAGACAAAAATCTCACATTGTAAAAGAATTCATGAAATCCAAGGTCTTAGAATGAATAATGTGACATGCTcgatttagtgccattgcaaCTAAAGGCGGCCGACGACAACTTCCTGGCAAtgttggaaatttttttttattaaaatctcggAATGTGAGTTCTGCTATGATGATCATCTCAAACCTGCCAATAAGAGGACTGTACAGGTTGATGCAAAACTCACAGTACAGCTACGAATACGGTAGCAGCAATGGCTTAAAACGTAAACGAaacatgcaaatgaaaaaaatccttGACCATTTCTATTTACGTGAGCCTGGATCAGCCTGAGTCATGATATAATCtgtaatcacaggtctatcgttagaggatcttcattgtataatctgagATACAAAACACATGATGACGTTATAGAATTCAGCCGAAGTTAATCTTAAAGTTAATCGTAAATGACCGCAGTGTAAAAAAGGTTTAAGCCAAGTAGAATGGCTATTTTATTTCCCAGCTCTGGTCCTGGAGAATCCCCTGTcctgcatatttgtgttttccctgctcaactgaatcaggtgtgttagagcagagaaagcTAGCAAACATTCAGGACTAGGATTGAGAATCTGTACTTCAGACAGATTTAGTGGGgaaatggtggcacagtggttaAGGGGTTAGGGCTGTTGAGCcaaaggtcatgagttcaaatcccagcagcaGCATGGGTTCTTGAACAAGACTTGTAACCCTCCAACTACTCAATTGTATCCTGTCTCGATTGTAAGTCTCTTTGGAAATGAGTAAACAAAGGCTAGTACatgactgaaaagaaaaaaaaaaagttttccactCTTTGATAGCATCCAGTCTTATGTTTAGGTCTATAAGTGTCATGGTGTATTAATGATCTGTGCGGATTTCCTGACTTGTTTCCTGTTCTGTTGAACGCTGCCTTCTAACATTCATAAATAAACTATTGCTCATTCG

Function

GO: NA

KEGG:

id description
K11544 DSN1; kinetochore-associated protein DSN1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026945952.2 False 3106 mRNA 0.43 11 4599150 4611600
XM_034298325.1 False 3030 mRNA 0.43 11 4599235 4611600
XM_034298326.1 True 3152 mRNA 0.42 11 4599300 4611600

Neighbor

gene id symbol gene type direction distance location
atp13a1 atp13a1 coding upstream 1717 4575616 ~ 4597433 (+)
lmx1al lmx1al,LOC108256788,LOC108429662,LOC107672514,LOC107670451,LOC103034908,LOC100696700 coding upstream 33869 4528819 ~ 4565281 (+)
gmip gmip coding upstream 75050 4498517 ~ 4524100 (+)
colgalt1a LOC108257422,LOC108429625,LOC107757371,LOC107670492,LOC107672476,LOC107711180,LOC107567242 coding upstream 104704 4477813 ~ 4494446 (+)
pgls pgls coding upstream 122178 4471731 ~ 4476972 (+)
xab2 xab2,LOC102796593 coding downstream 169691 4781291 ~ 4794558 (+)
camsap3 camsap3 coding downstream 186741 4798341 ~ 4840522 (+)
LOC113546287 rdh8,LOC108257005,LOC108429652,LOC105905727,LOC107563320 coding downstream 265795 4877395 ~ 4887345 (+)
col5a3a col5a3,LOC107587984,LOC107757338 coding downstream 403230 5014830 ~ 5096273 (+)
olfm2a olfm2,olfm2a,LOC107563315 coding downstream 531626 5143226 ~ 5254263 (+)
G338164 NA non-coding upstream 228939 4339204 ~ 4370211 (+)
G338147 NA non-coding upstream 272655 4326052 ~ 4326495 (+)
G338116 NA non-coding upstream 330695 4268246 ~ 4268455 (+)
G338057 NA non-coding upstream 343251 4255557 ~ 4255899 (+)
G337381 LOC108257371,LOC108257372,LOC108429690,LOC103024650,LOC107599305,LOC107670512,LOC107728686 non-coding upstream 555961 3936171 ~ 4043189 (+)
G338252 NA non-coding downstream 65917 4677517 ~ 4679625 (+)
G338246 NA non-coding downstream 106597 4718197 ~ 4731105 (+)
G338658 NA non-coding downstream 629725 5241325 ~ 5241584 (+)
LOC117595846 NA non-coding downstream 765606 5377206 ~ 5386152 (+)
G338683 NA non-coding downstream 776388 5387988 ~ 5392192 (+)
G338163 NA other upstream 244121 4352522 ~ 4355029 (+)
rsad1 rsad1 other upstream 274114 4307922 ~ 4325036 (+)
LOC113546300 LOC108280069,LOC108261210,LOC108257281,LOC108257282,LOC108257284,LOC108257326,LOC108257286,LOC108257289 other upstream 2206613 2358116 ~ 2392537 (+)
LOC117595892 LOC108257284,LOC108257282,LOC108257281,LOC108257289,LOC108257310,LOC108272567,LOC108261104,LOC108280065,LOC108272472,LOC108261175,LOC108279530,LOC100526730,LOC108257326,LOC108257286,LOC108261265 other upstream 2247401 2185892 ~ 2351749 (+)
pbx4 pbx4,LOC107757367,LOC107672472,LOC107670485,LOC103392870,LOC102788435 other downstream 4724 4616324 ~ 4668256 (+)
brd4 LOC108257120,LOC108429657 other downstream 86657 4698257 ~ 4752669 (+)
LOC113546199 pet100,LOC107672445,LOC107563330,LOC107587949 other downstream 146214 4757814 ~ 4762602 (+)
stxbp2 stxbp2,LOC107670524,LOC107587946,LOC107711254,LOC107757364 other downstream 149713 4761313 ~ 4780386 (+)
LOC113535938 tmem196,LOC106588729,LOC107667578,LOC107568813,LOC107755951,LOC107571147,LOC107655099 other downstream 1722389 6333989 ~ 6343909 (+)

Expression


Co-expression Network