olfm2a (olfm2,olfm2a,LOC107563315)


Basic Information

Item Value
gene id olfm2a
gene name olfm2,olfm2a,LOC107563315
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 5143226 ~ 5254263 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026945957.2
gaaagagagagagagtgaatgtgtgtgtgtgaggcgctGGCATTCGCTCTTAGACATCAGGAGCCGGGTGGACTGACGGAGTGTGATGCCACTGGATCCCGCTCCTGCTTTCGCTGCTGCATTTGTGCGTCCAGCCTGCTGTTGAGAGGCTACCGCAAGTGTGCGAGTGTATTGTGCGCAAGGCTCAAGTCGCtcacgtgagtgtgtgtgtgtgtgtgagagtgtgtgggcCCCCGGTGAGGGGCTCAGCAGGTTGGGCTGGGGGGCGGTAAGGCCAGGTGGCTGTGAGCACCATGAGCGTGCCACTGCTGAAGATCGGAGCGGTGCTCAGCACCATGGCCATGGTCACCAACTGGATGTCTCAGACGCTGCCCTCGCTCGTGGGGCTCAACGGCACCACCGTGTCCCGCGCCGGAACCTCAGAGAGGATCGTCAGCgccTTGTACCCGAGCCCGGAGGAAGGCTGGCAGATCTACAGCTCCGCGCAGGATGCAGATGGGAAGTGTATCTGCACGGTGGTGGCTCCGGCCCAGAACATGTGTAATCGAGACCCACGCAGCCGCCAGCTCCGCCAGCTCATGGAGAAGGTCCAGAACATTACCCAGTCTATGGAGGTGCTGGATTTAAGGACATACCGGGATTTACAGTACGTCAGGGACACGGAGAACCTAATGAAAACAGTGGATGGCAAATTGAAGACGGCTTCGGAGAACCCACGCAGCCTCAACCCCAAGAGCTTTCAGGACCTAAAGGACAAGGTGACCCAGCTACTCCCCCTGTTGCCGGTGCTGGAGCAGTATAAGACGGATGCGCAGATGATCCTGCGGCTCAGAGACGAGGTGAGGAACCTGTCACTGGTGCTCATGGCCATCCAGGAGGAGATGGGAGCCTACGACTACGAGGAGCTCCGGCAGAGAGTCCTGTTGCTGGAGACACGCCTTCACTCCTGCATGCAGAAACTGGGCTGTGGGAAGCTGACGGGTGTCAGTAACCCCATCACCATCCGCGCCTCAGGCTCTAGGTTTGGTTCCTGGATGACAGACACCATGATTCCCAGCTCTGATAACAGGGTGTGGTCAATGGACGGCTACTTCAAAGGGCGGCGTGTGCTTGAGTACCGCACCCTGAGCGACTTCATGAAGGGTCAGAACTTCGTTCAGCACCTCCTGCCTCACCCCTGGGCCGGGACGGGTCACGTGGTCTACAACGGCTCCCTTTACTACAACAAGTACCAGAGCAACATCCTGATCAAGTACCACTTTCGTTCACGCAGCGTCCTGGTGCAGCGCAGTCTGAGCGGTGCCGGCTACAACAACACCTTCCCGTACTCGTGGGGCGGCTCGTCTGATATTGACCTGATGGCCGACGAGAGCGGACTGTGGGTCGTTTACACCACCATCGCCAATGCGGGCAACATCGTCATCAGCCGCCTGCAGCCTGAGAGCCTGGAAATCCTGCAGACGTGGGACACGGGTTTCCCCAAGCGCAGTGCTGGCGAGTCCTTCATGATCTGCGGTACGCTCTACGTCACCAACTCGCATCTCGCCGGTGCCAAGATCTACTTCGCCTACTACACCAACACGTCCACCTATGAGTACACGGACATCCCATTCCATAACCAGTACTCACACATCTCCATGATGGACTACAACCCACGTGAGCGTGTGCTCTACACCTGGAACAACGGCCACCAGGTGCTCTACAACGTCACGCTGTTCCAGGTCATCAAGACCTCCGGGGACTGAGGCTGTcacttatacatacacacaaaacacacctgTGCATTACATATTTACCATACAAGTGcgtgtatatacatataaaccCACAAACTGACAAGAAGGACATGACCATGACTGGAGCttagacttttctttttttctttctttctttctttttttttttacatttcaatcTTCATAGAGTGCTATTATTCACATAATGTACTGAGAAAAGCCCACGGGCAGCAAGGTCGATGCCGATATACGAACtgagcttttgtttttttgttttttttttcttttctgtgacAAGTGAGCATGACACGTTTTTGATTtgtggccaaaaaaaagaataaacgtCTACCTTTAACAT
>XM_026945958.2
GCAGTCctgtccatctctccatctctctctgtcctcctcttcctcctcctcctcctcctcctcttacTCATCCTGCGCTTCTCCTTCGTCACACTTCTACTTGACCGTAAAACGGGAAGCGCCgggagcgcgcgcgcgcgccaGCACTGACCTTTCCGCCGGCGGTCCTCACgtagaagacagagagagagagagagagagagagagagagagagagagagcgcataCGAATAGAGGAAGCATCACGCGCCGCGCTAACGAGACAGGCTACAGCCTTGCGCGCGCACCGCACCACCGGTGATGAGGATTGTCGCGCGCCGGATCGTGCAGAGAAACCGGGCTGTGTCGGAACCGGGGGCTCGCTGAGAAAAAAacagggaggagaggagaggagaggaggagaggaaaggagacgagaggagaggagaggagagaagaggagaggagagagctGCCGCTTGGGGGAAGAATGAACCTCTTCAGTGCCATGTTCCTCCTGCTGATGTTAGCCTCCCTGCCGTGTGAGgccTTGTACCCGAGCCCGGAGGAAGGCTGGCAGATCTACAGCTCCGCGCAGGATGCAGATGGGAAGTGTATCTGCACGGTGGTGGCTCCGGCCCAGAACATGTGTAATCGAGACCCACGCAGCCGCCAGCTCCGCCAGCTCATGGAGAAGGTCCAGAACATTACCCAGTCTATGGAGGTGCTGGATTTAAGGACATACCGGGATTTACAGTACGTCAGGGACACGGAGAACCTAATGAAAACAGTGGATGGCAAATTGAAGACGGCTTCGGAGAACCCACGCAGCCTCAACCCCAAGAGCTTTCAGGACCTAAAGGACAAGGTGACCCAGCTACTCCCCCTGTTGCCGGTGCTGGAGCAGTATAAGACGGATGCGCAGATGATCCTGCGGCTCAGAGACGAGGTGAGGAACCTGTCACTGGTGCTCATGGCCATCCAGGAGGAGATGGGAGCCTACGACTACGAGGAGCTCCGGCAGAGAGTCCTGTTGCTGGAGACACGCCTTCACTCCTGCATGCAGAAACTGGGCTGTGGGAAGCTGACGGGTGTCAGTAACCCCATCACCATCCGCGCCTCAGGCTCTAGGTTTGGTTCCTGGATGACAGACACCATGATTCCCAGCTCTGATAACAGGGTGTGGTCAATGGACGGCTACTTCAAAGGGCGGCGTGTGCTTGAGTACCGCACCCTGAGCGACTTCATGAAGGGTCAGAACTTCGTTCAGCACCTCCTGCCTCACCCCTGGGCCGGGACGGGTCACGTGGTCTACAACGGCTCCCTTTACTACAACAAGTACCAGAGCAACATCCTGATCAAGTACCACTTTCGTTCACGCAGCGTCCTGGTGCAGCGCAGTCTGAGCGGTGCCGGCTACAACAACACCTTCCCGTACTCGTGGGGCGGCTCGTCTGATATTGACCTGATGGCCGACGAGAGCGGACTGTGGGTCGTTTACACCACCATCGCCAATGCGGGCAACATCGTCATCAGCCGCCTGCAGCCTGAGAGCCTGGAAATCCTGCAGACGTGGGACACGGGTTTCCCCAAGCGCAGTGCTGGCGAGTCCTTCATGATCTGCGGTACGCTCTACGTCACCAACTCGCATCTCGCCGGTGCCAAGATCTACTTCGCCTACTACACCAACACGTCCACCTATGAGTACACGGACATCCCATTCCATAACCAGTACTCACACATCTCCATGATGGACTACAACCCACGTGAGCGTGTGCTCTACACCTGGAACAACGGCCACCAGGTGCTCTACAACGTCACGCTGTTCCAGGTCATCAAGACCTCCGGGGACTGAGGCTGTcacttatacatacacacaaaacacacctgTGCATTACATATTTACCATACAAGTGcgtgtatatacatataaaccCACAAACTGACAAGAAGGACATGACCATGACTGGAGCttagacttttctttttttctttctttctttctttttttttttacatttcaatcTTCATAGAGTGCTATTATTCACATAATGTACTGAGAAAAGCCCACGGGCAGCAAGGTCGATGCCGATATACGAACtgagcttttgtttttttgttttttttttcttttctgtgacAAGTGAGCATGACACGTTTTTGATTtgtggccaaaaaaaagaataaacgtCTACCTTTAACAT
>XM_026945959.2
TCTGTTGGACTCCATTGTTACTGTGGGATTCTAAGGATTTGAACTTACGACCTCCAAACGACAaggccTTGTACCCGAGCCCGGAGGAAGGCTGGCAGATCTACAGCTCCGCGCAGGATGCAGATGGGAAGTGTATCTGCACGGTGGTGGCTCCGGCCCAGAACATGTGTAATCGAGACCCACGCAGCCGCCAGCTCCGCCAGCTCATGGAGAAGGTCCAGAACATTACCCAGTCTATGGAGGTGCTGGATTTAAGGACATACCGGGATTTACAGTACGTCAGGGACACGGAGAACCTAATGAAAACAGTGGATGGCAAATTGAAGACGGCTTCGGAGAACCCACGCAGCCTCAACCCCAAGAGCTTTCAGGACCTAAAGGACAAGGTGACCCAGCTACTCCCCCTGTTGCCGGTGCTGGAGCAGTATAAGACGGATGCGCAGATGATCCTGCGGCTCAGAGACGAGGTGAGGAACCTGTCACTGGTGCTCATGGCCATCCAGGAGGAGATGGGAGCCTACGACTACGAGGAGCTCCGGCAGAGAGTCCTGTTGCTGGAGACACGCCTTCACTCCTGCATGCAGAAACTGGGCTGTGGGAAGCTGACGGGTGTCAGTAACCCCATCACCATCCGCGCCTCAGGCTCTAGGTTTGGTTCCTGGATGACAGACACCATGATTCCCAGCTCTGATAACAGGGTGTGGTCAATGGACGGCTACTTCAAAGGGCGGCGTGTGCTTGAGTACCGCACCCTGAGCGACTTCATGAAGGGTCAGAACTTCGTTCAGCACCTCCTGCCTCACCCCTGGGCCGGGACGGGTCACGTGGTCTACAACGGCTCCCTTTACTACAACAAGTACCAGAGCAACATCCTGATCAAGTACCACTTTCGTTCACGCAGCGTCCTGGTGCAGCGCAGTCTGAGCGGTGCCGGCTACAACAACACCTTCCCGTACTCGTGGGGCGGCTCGTCTGATATTGACCTGATGGCCGACGAGAGCGGACTGTGGGTCGTTTACACCACCATCGCCAATGCGGGCAACATCGTCATCAGCCGCCTGCAGCCTGAGAGCCTGGAAATCCTGCAGACGTGGGACACGGGTTTCCCCAAGCGCAGTGCTGGCGAGTCCTTCATGATCTGCGGTACGCTCTACGTCACCAACTCGCATCTCGCCGGTGCCAAGATCTACTTCGCCTACTACACCAACACGTCCACCTATGAGTACACGGACATCCCATTCCATAACCAGTACTCACACATCTCCATGATGGACTACAACCCACGTGAGCGTGTGCTCTACACCTGGAACAACGGCCACCAGGTGCTCTACAACGTCACGCTGTTCCAGGTCATCAAGACCTCCGGGGACTGAGGCTGTcacttatacatacacacaaaacacacctgTGCATTACATATTTACCATACAAGTGcgtgtatatacatataaaccCACAAACTGACAAGAAGGACATGACCATGACTGGAGCttagacttttctttttttctttctttctttctttttttttttacatttcaatcTTCATAGAGTGCTATTATTCACATAATGTACTGAGAAAAGCCCACGGGCAGCAAGGTCGATGCCGATATACGAACtgagcttttgtttttttgttttttttttcttttctgtgacAAGTGAGCATGACACGTTTTTGATTtgtggccaaaaaaaagaataaacgtCTACCTTTAACAT

Function

symbol description
olfm2a Acts upstream of or within neural crest cell development. Predicted to be located in extracellular region and synapse. Is expressed in several structures, including midbrain neural tube; nervous system; optic cup; optic vesicle; and pancreatic system. Orthologous to human OLFM2 (olfactomedin 2).
olfm2 Involved in positive regulation of smooth muscle cell differentiation. Acts upstream of or within protein secretion. Located in cytoplasm; extracellular region; and nucleoplasm.

NR:

description
noelin-2

GO:

id name namespace
GO:0014032 neural crest cell development biological_process

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026945957.2 False 2094 mRNA 0.54 6 5206144 5254263
XM_026945958.2 True 2183 mRNA 0.54 6 5143226 5254263
XM_026945959.2 False 1722 mRNA 0.52 6 5211366 5254263

Neighbor

gene id symbol gene type direction distance location
col5a3a col5a3,LOC107587984,LOC107757338 coding upstream 46953 5014830 ~ 5096273 (+)
LOC113546287 rdh8,LOC108257005,LOC108429652,LOC105905727,LOC107563320 coding upstream 255881 4877395 ~ 4887345 (+)
camsap3 camsap3 coding upstream 302704 4798341 ~ 4840522 (+)
xab2 xab2,LOC102796593 coding upstream 348668 4781291 ~ 4794558 (+)
LOC113546190 LOC108257430 coding upstream 531626 4599150 ~ 4611600 (+)
ppan ppan,LOC107711268,LOC107672501,LOC107670430,LOC103392573,LOC105905764 coding downstream 192730 5446993 ~ 5455237 (+)
LOC113536209 LOC108257204,LOC108257205,LOC108257203,LOC108257207,LOC108257206,LOC108256855,LOC108257209,LOC108261875,LOC108261620 coding downstream 208792 5463055 ~ 5467361 (+)
LOC113536250 LOC108257204,LOC108257207,LOC108257205,LOC108257203,LOC108257206,LOC108257209,LOC108256855,LOC108261875,LOC108261620 coding downstream 216299 5470562 ~ 5472111 (+)
LOC113536275 LOC108257203,LOC108257204,LOC108256855,LOC108257206,LOC108257209,LOC108257205,LOC108261875,LOC108257208 coding downstream 219679 5473942 ~ 5511202 (+)
LOC113535910 LOC108257332,LOC108257205,LOC108261620 coding downstream 247971 5502234 ~ 5511202 (+)
G338246 NA non-coding upstream 412121 4718197 ~ 4731105 (+)
G338252 NA non-coding upstream 463601 4677517 ~ 4679625 (+)
G338164 NA non-coding upstream 773015 4339204 ~ 4370211 (+)
G338147 NA non-coding upstream 816731 4326052 ~ 4326495 (+)
G338116 NA non-coding upstream 874771 4268246 ~ 4268455 (+)
LOC117595846 NA non-coding downstream 122943 5377206 ~ 5386152 (+)
G338683 NA non-coding downstream 133725 5387988 ~ 5392192 (+)
G338799 NA non-coding downstream 177586 5431849 ~ 5432264 (+)
G338814 dnmt1 non-coding downstream 270777 5525040 ~ 5526609 (+)
G338842 NA non-coding downstream 472915 5727178 ~ 5728306 (+)
stxbp2 stxbp2,LOC107670524,LOC107587946,LOC107711254,LOC107757364 other upstream 362840 4761313 ~ 4780386 (+)
LOC113546199 pet100,LOC107672445,LOC107563330,LOC107587949 other upstream 380624 4757814 ~ 4762602 (+)
brd4 LOC108257120,LOC108429657 other upstream 390557 4698257 ~ 4752669 (+)
pbx4 pbx4,LOC107757367,LOC107672472,LOC107670485,LOC103392870,LOC102788435 other upstream 474970 4616324 ~ 4668256 (+)
G338163 NA other upstream 788197 4352522 ~ 4355029 (+)
LOC113535938 tmem196,LOC106588729,LOC107667578,LOC107568813,LOC107755951,LOC107571147,LOC107655099 other downstream 1079726 6333989 ~ 6343909 (+)
mturn mturn,LOC107559763,LOC107572558 other downstream 1350342 6604605 ~ 6616023 (+)
G339324 NA other downstream 1456752 6711015 ~ 6717146 (+)
LOC113536074 LOC108257189,LOC108257413 other downstream 2986434 8240697 ~ 8271499 (+)
G340208 LOC108256789 other downstream 3028697 8282960 ~ 8285204 (+)

Expression


Co-expression Network