LOC113546219 (LOC108256900)


Basic Information

Item Value
gene id LOC113546219
gene name LOC108256900
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 3297910 ~ 3305283 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026945983.2
TCTATGAAACGCACAGTCTGAACCTTCGCCATGGAGCAACATGGCCGCTGTTGGGACGTCGCCTAGTCAGGAAGGTGGAAAGAACAGAAGTAGCAGCTGAAGGTACTTGGGACAATGTCGAACAAATCGGGGTGTAAGTTGTGTCGTTCTGTGTGGCACGCGACCTTGCTGCTGTCCACCTTGCTCATCGGTTTGCTCTACTACACCCCTTCCTTTCGATGTATGACACAAGAACTTGAAGAACCCATCATGAACCCTGCACACCGTCCCGTCTTGGTGCTCATCTGGCTCTGGCCCTTTAACCAGACCTTTGACCTTGACCTCTGCAGCTCCCACTTCAACATTCACAGCTGTGTCTTAACAGCCGACCGgaatttctttaataaagccGATGGTGTCCTGATCCACCACCGGGACATCGCTTGGGATGCGTCGAATCTCCCGCAGTTTCTTCGGCCGCCCCATCAGAAGTGGATCTGGATGAATTCCGAGTCACCGTCGAACACGGCCCGGATCCCCGGCCTCGACAACCTGTTTAACATCTCGCTGAGTTACCGCAAAGACGCCGACATCAGCGTGCCTTACGGCTCTCTGGTTCCAGTTGACCACCAGTTTGAGGACATTGTGGACTTTCTACCTTCTGAAAAGGACAAGCTAGTCTGCTGGATCGTTAGCAACTACAAGCCAGAACACGGGAGGGTGCAGTACTACCAGCAGCTGCGCAAGTACGTCCAGATTCATGTCTACGGCGACTGGTTCGAGAAGCATGTTTCCGAAGAAGAGTACAAAGACATCATCTCGAGCTGCAAGTTCTACCTGTCCTTCGAGAACTCCGTGCACAAGGACTACATCACAGAGAAACTGTTCAACGCCCTGGATCTGGGGGCCGTCCCCATCGTCTTTGGCCCGTCCAGGCAGAACTACGAGCGCTTCGTCCCCGGCGACGCCTTCATCCACGTGGACGACTTCCCTTCCATGAGGGCTCTGGCTAGGCATCTCTTCTTTTTGCATCGAAACGAAGCCTTGTATCTCAGGTACTTCAGATGGAGGAGACGTTTCCGAGTAAAGATGTCTTCCTTCCCGGTGGAAAACGCGTGCCAGTGTTGCGAGTACATCCGACGGAACAGGCAGTATCAGGTGCTTACAAATCTGTATCAGTGGTACTGGGATACGAGCGAAGGACTTGACCTGCCACCGTCCTTCTACTAACCTGAACACAACTTTCAGTGCCATGagactttttcttttccctatTCGCTGCCTCGGTCAGACTGCTCAGGTAATTCATCAATTTGAATATAAATCTGgcatgtgtatgtttatgaATTCAGGTCTTTTATCACTGATCCTGAAGGCTGGAATGTTGGGACTTGATACTTATCTGTACTCacatgtgattatttatttcttacaacacaACACTCCTTGTTTCTGCATCTGTCAGCTTAAAGACTGTGAACATTTAATCAATAGCGACTGTTCTTGTTGAAGAAAAGGAGTTCAATTCAGACAGAGATTGTTTTCTAGCTTCTATGATCATAATAAGCTAAAAACAAAAGACCTGAAtgaaaaattcaataaataaatgcaattaatGCAATGA
>XM_034298427.1
agaagtctccattcacaggggactgtgtttgccagcaccGCGTCGGTTGTGTCTTCGTCAGGGGATGCTCGTGGACATCCGCTTCTCGTGTCATAATCAGCGGCGAAACACAATTATGAGCCGAGTGGTCCCGAGAGTGGCGTAATTAAACACAGTGATGGCTTACTCCGCTTCTTTTCCTGTTGTTAGTCGACTAGTCTATGAAACGCACAGTCTGAACCTTCGCCATGGAGCAACATGGCCGCTGTTGGGACGTCGCCTAGTCAGGAAGGTGGAAAGAACAGAAGTAGCAGCTGAAGGGACAATGTCGAACAAATCGGGGTGTAAGTTGTGTCGTTCTGTGTGGCACGCGACCTTGCTGCTGTCCACCTTGCTCATCGGTTTGCTCTACTACACCCCTTCCTTTCGATGTATGACACAAGAACTTGAAGAACCCATCATGAACCCTGCACACCGTCCCGTCTTGGTGCTCATCTGGCTCTGGCCCTTTAACCAGACCTTTGACCTTGACCTCTGCAGCTCCCACTTCAACATTCACAGCTGTGTCTTAACAGCCGACCGgaatttctttaataaagccGATGGTGTCCTGATCCACCACCGGGACATCGCTTGGGATGCGTCGAATCTCCCGCAGTTTCTTCGGCCGCCCCATCAGAAGTGGATCTGGATGAATTCCGAGTCACCGTCGAACACGGCCCGGATCCCCGGCCTCGACAACCTGTTTAACATCTCGCTGAGTTACCGCAAAGACGCCGACATCAGCGTGCCTTACGGCTCTCTGGTTCCAGTTGACCACCAGTTTGAGGACATTGTGGACTTTCTACCTTCTGAAAAGGACAAGCTAGTCTGCTGGATCGTTAGCAACTACAAGCCAGAACACGGGAGGGTGCAGTACTACCAGCAGCTGCGCAAGTACGTCCAGATTCATGTCTACGGCGACTGGTTCGAGAAGCATGTTTCCGAAGAAGAGTACAAAGACATCATCTCGAGCTGCAAGTTCTACCTGTCCTTCGAGAACTCCGTGCACAAGGACTACATCACAGAGAAACTGTTCAACGCCCTGGATCTGGGGGCCGTCCCCATCGTCTTTGGCCCGTCCAGGCAGAACTACGAGCGCTTCGTCCCCGGCGACGCCTTCATCCACGTGGACGACTTCCCTTCCATGAGGGCTCTGGCTAGGCATCTCTTCTTTTTGCATCGAAACGAAGCCTTGTATCTCAGGTACTTCAGATGGAGGAGACGTTTCCGAGTAAAGATGTCTTCCTTCCCGGTGGAAAACGCGTGCCAGTGTTGCGAGTACATCCGACGGAACAGGCAGTATCAGGTGCTTACAAATCTGTATCAGTGGTACTGGGATACGAGCGAAGGACTTGACCTGCCACCGTCCTTCTACTAACCTGAACACAACTTTCAGTGCCATGagactttttcttttccctatTCGCTGCCTCGGTCAGACTGCTCAGGTAATTCATCAATTTGAATATAAATCTGgcatgtgtatgtttatgaATTCAGGTCTTTTATCACTGATCCTGAAGGCTGGAATGTTGGGACTTGATACTTATCTGTACTCacatgtgattatttatttcttacaacacaACACTCCTTGTTTCTGCATCTGTCAGCTTAAAGACTGTGAACATTTAATCAATAGCGACTGTTCTTGTTGAAGAAAAGGAGTTCAATTCAGACAGAGATTGTTTTCTAGCTTCTATGATCATAATAAGCTAAAAACAAAAGACCTGAAtgaaaaattcaataaataaatgcaattaatGCAATGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026945983.2 False 1603 mRNA 0.49 2 3301167 3305283
XM_034298427.1 True 1793 mRNA 0.49 3 3297910 3305283

Neighbor

gene id symbol gene type direction distance location
znf750 znf750 coding upstream 24983 3268938 ~ 3272927 (+)
si:ch211-165g14.1 NA coding upstream 159937 3128704 ~ 3137973 (+)
mfsd13al LOC108256898 coding upstream 170180 3112241 ~ 3127730 (+)
sdr42e2 LOC108256832 coding upstream 206032 3071900 ~ 3091878 (+)
vwa3a vwa3a coding upstream 229938 3041368 ~ 3067972 (+)
adgrl1a adgrl1,LOC107599314,LOC107711219 coding downstream 119022 3424305 ~ 3635392 (+)
tnfsf18 NA coding downstream 417906 3723189 ~ 3732164 (+)
qtrt1 qtrt1,LOC107744982,LOC107661875 coding downstream 506343 3811626 ~ 3821302 (+)
LOC113546282 LOC108257500,LOC108429693,LOC565691,LOC107711212,LOC107599308,LOC107661824 coding downstream 520676 3825959 ~ 3929254 (+)
tecra tecra,LOC108256782,LOC108429689,LOC107711203,LOC107602715,LOC107661839 coding downstream 660094 3965377 ~ 3976866 (+)
G337197 LOC108256899 non-coding upstream 195719 3095997 ~ 3102191 (+)
G337195 NA non-coding upstream 263516 3033844 ~ 3034394 (+)
G337194 NA non-coding upstream 278500 3019110 ~ 3019410 (+)
LOC113546290 NA non-coding upstream 302639 2926524 ~ 2995271 (+)
G337138 NA non-coding upstream 427001 2870683 ~ 2870909 (+)
G337304 NA non-coding downstream 184570 3489853 ~ 3491029 (+)
G337273 NA non-coding downstream 405419 3710702 ~ 3712919 (+)
G337374 NA non-coding downstream 437854 3743137 ~ 3745935 (+)
G337363 NA non-coding downstream 454373 3759656 ~ 3762176 (+)
LOC113546270 NA non-coding downstream 464302 3769585 ~ 3771026 (+)
LOC113546300 LOC108280069,LOC108261210,LOC108257281,LOC108257282,LOC108257284,LOC108257326,LOC108257286,LOC108257289 other upstream 905373 2358116 ~ 2392537 (+)
LOC117595892 LOC108257284,LOC108257282,LOC108257281,LOC108257289,LOC108257310,LOC108272567,LOC108261104,LOC108280065,LOC108272472,LOC108261175,LOC108279530,LOC100526730,LOC108257326,LOC108257286,LOC108261265 other upstream 946161 2185892 ~ 2351749 (+)
LOC113546301 LOC108257282,LOC108257281,LOC108257284,LOC108257326,LOC108257289,LOC108257286,LOC108257310 other upstream 957649 2302145 ~ 2340261 (+)
G336822 ldlrad4 other upstream 1352044 1876274 ~ 1945866 (+)
polr2k NA other upstream 1617558 1675040 ~ 1680352 (+)
rsad1 rsad1 other downstream 1002639 4307922 ~ 4325036 (+)
G338163 NA other downstream 1047239 4352522 ~ 4355029 (+)
pbx4 pbx4,LOC107757367,LOC107672472,LOC107670485,LOC103392870,LOC102788435 other downstream 1311041 4616324 ~ 4668256 (+)
brd4 LOC108257120,LOC108429657 other downstream 1392974 4698257 ~ 4752669 (+)
LOC113546199 pet100,LOC107672445,LOC107563330,LOC107587949 other downstream 1452531 4757814 ~ 4762602 (+)

Expression


Co-expression Network