lix1l (lix1l,LOC107693252)


Basic Information

Item Value
gene id lix1l
gene name lix1l,LOC107693252
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 1596847 ~ 1608854 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026946046.2
ATGGAGTCTCTCCGCCATCAGCAGCGCCTCCAGCCCGGGGTGGGATACGGAGCCACACTCAGAGCCGCGCTCAGGCCCGGAGTCACCGGAACCGGAACCGTGGCGAGCTCCGGGCCTCCGCCGCCGCTCCCTCCGCTCCACAGCCTCAGCGCCGGATTCATGAGCCACGCCGCGCTCGGAGCTCCGGAACCGGCCACAAACCCCGCCGTGCTGCGGGAAGCGGTGGACGCGGTGGTGCGGAGCTTCGCCAAGCACACGCAGGGATACGGCAGGGTGAACGTGGTGGAGGCTCTGCAGGAGTTCTGGCAGATGAAGCAGTCTCGAGGAGCCGAGCTGAAGAACGGAGCATTGGTGGTGTATGAGATGGTTCCTTCCAACAGTCCTCCGTACGTCTGCTACGTCAGTCTCCCAGGGGGCAGCTGCTTCGGGAGCTTTCAGTTTTGTCCAACGAAAGCCGAAGCGAGACGCAGCGCGGCCAAAATCGCCTTAATGAACTCCGTGTTTAACGAGCATCCATCCCGCAGGATCACGGACGAGTTCAtcgagaagagtgtgtgtgaagctctCGCCTCCTTCAACGGAAACAGAGAAGAAGCGGATAATCCCAACACGGGCATCGGGGCGTTCCGCTTCATGCTGGAGTCTAACAAAGGCAAATCCATGCTGGAGTTCCAGGAGCTGATGACAGTTTTCCAGCTTCTGCACTGGAATGGAAGTCTTAAAgccatgagagagagacagtgctCTCGCCAGGAGGTGTTGGCTCATTACTCTCACCGCGCTCTGGATGATGATATGAGGACGCAGATGGCGGCGGATTGGGTGAACCGTGAGCACGGCGTGTCAGGCAGTGTGGCGCGAGAGCTGGCGGCCACCGAGCGAGAGCTGGAGGAGGCGCGACTCGCCGGCCGAGAGTTACGcttttataaagaaaagaaggaCATCTTGATTATGGCACTGGGGCAACTGGGCGGCTCCAACAGCACCACACTGCCCCTAACCTGCTGAAGAGACAGGATACAACGGTGACGGACCACGTAATGtccacacacacgcgcacacacacacacacacgcacacacacacacacatattataaacGGTGTTCATAGTACATTTCCTGTAAAAGTTAAATATGGAGCTCGGGTTGAATCTGactaataataaagcaaaaaacacttcagtatttaAGAATGAATTTAAAACACGAGGCCAATGTTGTTCATTAAAGTGTTTGTAAAGGGTTTTGTTGGTGCTACatgaatttatttcattaataatatcTTATagccattaaaaatgaaagtgcaATTCATCATTTCACAAATATCGCTTTTACATTCGTTATAATCACGGCAtacatctgtaaaaaaaaaaaaaagaaaaaaaaagaaaagaaaaagaaaatcttgtgattatttttttaatacaatttatttgtgtttgtttcataTATACCTGTATGTATGTTATCACGTATTACTCATACGACTTGTGTAAATGATTTAATGTAGCGTAAAGCCATTTTACTACAATCATTTCTGTCtggaaatacattttatacagcgttattgaattttatataatagcagccattttgttttatatgatCCTTTTATTATATGACTGTTTGTGACGATTCAATATCCAGTTTTCTTTGTAgatttatattctttaaataataaagccATTTTACAATATTGTTA

Function

symbol description
lix1l Predicted to be involved in autophagosome maturation. Predicted to be active in cytoplasm. Is expressed in eye; hindbrain; and pharyngeal arch 3-7. Orthologous to human LIX1L (limb and CNS expressed 1 like).

NR:

description
PREDICTED: LIX1-like protein

GO: NA

KEGG:

id description
K16673 LIX1L; LIX1-like protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026946046.2 True 1706 mRNA 0.48 6 1596847 1608854

Neighbor

gene id symbol gene type direction distance location
prcc prcc coding upstream 10385 1578998 ~ 1586462 (+)
mrpl24 mrpl24,LOC107559719,LOC107693309,LOC107669969 coding upstream 18691 1574337 ~ 1578156 (+)
mindy1 fam63a,LOC107693308,LOC107559718,LOC107669987,LOC106569905 coding upstream 52316 1530514 ~ 1544531 (+)
LOC113546241 LOC108257282,LOC108257284,LOC108257326,LOC108257286,LOC108257289,LOC108257310,LOC108280069,LOC108257281 coding upstream 75097 1444104 ~ 1521750 (+)
LOC113546297 LOC108257310,LOC108257281,LOC108257282,LOC108257326,LOC108257289,LOC108257286,LOC108257284 coding upstream 105620 1471050 ~ 1491227 (+)
adck5 adck5 coding downstream 1760 1610614 ~ 1629996 (+)
spag1a spag1,spag1a,LOC108438857,LOC107748364 coding downstream 74480 1683334 ~ 1701731 (+)
grhl2b grhl2,grhl2b,LOC107748368,LOC107672862,LOC107550099,LOC107552317,LOC107738316,LOC107698657 coding downstream 195816 1804670 ~ 1842048 (+)
psmg2 psmg2 coding downstream 274591 1883445 ~ 1891699 (+)
seh1l seh1l,LOC107668717,LOC107746927 coding downstream 312081 1920935 ~ 1932700 (+)
G336275 NA non-coding upstream 8553 1586247 ~ 1588294 (+)
G336406 NA non-coding upstream 16547 1579795 ~ 1580300 (+)
G336267 NA non-coding upstream 45647 1549855 ~ 1551200 (+)
G336391 NA non-coding upstream 47617 1548991 ~ 1549230 (+)
G336283 NA non-coding upstream 47955 1548665 ~ 1548892 (+)
G336256 pabpc1,LOC107672855 non-coding downstream 129309 1738163 ~ 1741007 (+)
G336261 NA non-coding downstream 147331 1756185 ~ 1757404 (+)
G336481 NA non-coding downstream 212278 1821132 ~ 1842536 (+)
G336482 NA non-coding downstream 233735 1842589 ~ 1842970 (+)
G336849 fam210a,LOC107675659,LOC107754921,LOC107566562,LOC107668710 non-coding downstream 357122 1965976 ~ 1984496 (+)
G336334 NA other upstream 261273 1269809 ~ 1335574 (+)
G336350 cdk12 other upstream 269340 1325816 ~ 1327507 (+)
mllt11 mllt11 other upstream 460723 1132955 ~ 1136124 (+)
G336213 NA other upstream 620526 973669 ~ 976321 (+)
G336172 NA other upstream 802152 794117 ~ 794695 (+)
G336433 parp10 other downstream 48463 1657317 ~ 1659459 (+)
polr2k NA other downstream 66186 1675040 ~ 1680352 (+)
G336822 ldlrad4 other downstream 267420 1876274 ~ 1945866 (+)
LOC117595892 LOC108257284,LOC108257282,LOC108257281,LOC108257289,LOC108257310,LOC108272567,LOC108261104,LOC108280065,LOC108272472,LOC108261175,LOC108279530,LOC100526730,LOC108257326,LOC108257286,LOC108261265 other downstream 577038 2185892 ~ 2351749 (+)
LOC113546301 LOC108257282,LOC108257281,LOC108257284,LOC108257326,LOC108257289,LOC108257286,LOC108257310 other downstream 693291 2302145 ~ 2340261 (+)

Expression


Co-expression Network