LOC113546278 (LOC108256875)


Basic Information

Item Value
gene id LOC113546278
gene name LOC108256875
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 4445929 ~ 4451919 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026946047.2
CCAAAAACTAACCCCTCTCTAAAACGACGAGCTGAAAAAGGGTCGAGTTATCTTTAATTACCGTTCATTTACGACTTTTATTTTGGAAGCAAAATATCAAAATCTACCCGGAAGTGAAATCAACTTTATTTCCTATTGTTGATACAGTCTGGCGTAACTCCGCATCTCCTTCTTTATCGAACCCGGGGTTTTATCATGAGTTTTAGCTGCGAGTGAGGCTCAGTTTGttgcactgtttatttatttattttttgctcgtttttcctctcttttcggctaaaaaataaaagaaagaaaggatttaTTGTTGAGAGACTAAAGGCGCGAGTCTTTCTCTCGCCATGGCCGAGCCGCGTTGTTTTCAAACCCAGCTGAACTCCATCATGGAGATCATGAGCAGGGCGGTCGTGAGGCAGATCTGCAAGATCGTAGACAGCGACTTGGCGTCTTTACGACTGGAGCTGGAGCGCGCGCTTCACGACAACGCGGCTCTGGGAGACAAAATGCGCGTGCTCGAGAGCGAAGTGGAAACTCTGCGGAAAGCGGGAGCGCGCGCTCCGCGCAAGAGCTGCCGGTCTGTGTGCATCCAGACATCAGAAGTCGCTCCACCATCCATTAACGGCATCTTCGGGAAGGAGTGGTGCTCCAGTCTGTGGGACAGGAGGCCCAGGACAGAAGAGGCGGCGGTCGAGGTGGAGCCGGATGTGTCTGATGAGCCTGAAAACGATGAAGACAGCAATGTGCGTGCCATCAAAGAGGAGGTTTCTGAACAGGAAATCTGCGTCATCCATCCAACATCAAGGCGCAGAAGAAAGACGACCTCCGCTTCATCAGATCGTCATGACGTTTCAGAAGACATGGCTGATGACAACGCCAATGATGACGACATACACTTCATATCTGCAGGATTTCCGGAGACATCCGACGTCGACACCATGGCGCCGGATTCGCCGAGAGCCGCCGCAACAAAGCTCATATCTATGGATGGCACTGTTCAGCATGTCATAGTGTCGggcgatgatgatgacaatgacgatgatgatgttGAGGAAGAAGGTCAGCTGGAGTTTGAGCAGCACTGCATGCCCATTGAGTTTATGGAGGGTGAACGAGGAGAAGCCGCAGTATTTGAGAGACAGGACGAGGTGGAGCAGGAGGTGGAGCAGGACATTTTAACCGATTCAGAGTATATGACCGGCTCAGGTGGAGGTAGCGGtcacatttttaattacttcGACAGATTCAATATACATCAGCAACCCGGTCCAGGCGACGACTCGGGCAAGACGGACTTCACCTGTCCCGAATGTGGGAAGACATTCTTGCGCAGGAACGGTCTCACGTTGCACATGAAAAGTCACCAAAAGCAGAACGCGCACGCGTGCCGCACCTGCAAAGTCGTCTTCCCGCAAAAGAACCTCCTCCGAACTCACAAGTGTCTGCCTCCGGAAAAAACGCCTGCCAAAACGGCAGACATGAGGTTCCGCTGCGAGATGTGCGGCAAATATTTTCACTCCAAAGCCAACCTGAAGGTTCACTACGCCGTGCACACGGGAGAACGGCCTCACACGTGCAGCTTCTGCGGAAGAGGCTTCTCACAGAAAGGAAACCTTACCACTCACGAGCGCATCCACAAGGGAGAGCGGCCGTACATCTGCACCATCTGCGGGAAAAGCTTCACGCAGAAAGGCAACCTGACTCACCACCTGGCTATTCATAGCAAGATAAACGGCAGAATGAGGAACTCTGTTGAAAAATGGCAgtgactttattattattatttttttttttacatgcagtACGACAAAAAACTGTTGTATTGATTTCATCTCTGGAAAGAaagttttttaatcaaattttatttcacttactgtctttctctgtttgtcagtttttttcAAGTCTTTCAACACTTTGttttttcaagcattttttCTAGGTTCTTAACACCAAAATGTTACAAGAAACAAATAAGCTAATGTGAGAATTTTGTGTAACTAATGCCTGAGCCACACTAGAAGAGAATCAGGCTGATTCTTGCAGCCGTTTCGTCCTGATTTCAGGCTGGTCTTAAACAGTTGtgggtgtggagtgtgtgtataaacagaaatatgaatTGGGCTGCGTGGAAAGCAAAAAATACTTCCTGCAGAAACAATGTTCAGCTGGCTTTCACGAACGACATGACGTAATCACGGAGCGTCGTGTGTAGGCTTCGCTCATTGGGTCATGTGTCAAAGACAAGCCTGTGATTGGTGCAACCACCAATACATAACTGCAGAGAGTATGGAGtttgtaagtgttttttttttttttttgcgtaatCCTCGTAGACGTCGTCTACACATTAAGCACTCCTGAGCGAGGGCCAGTACGAAGCTTGTTAACTTGCGAAGGTGGTTTTGTCTTCGCACAATCCTCCGAGACATTGTCTCCACCTTTGGCAGCTGTATTGCATAAGCTCCGCCTCTCAGTAACGAACCAATCACCTTGTTGGTTAGCAGACATGCAGAACCTATTAGGGTATTAACACAGGGTGCTTCGCTTGCCATTTCCATAGATCTCATGTTACTTGCTCACAGATTTTAACACTGACTTCAAATCTGTGTTCGAAACATCATATCTGGTTTATAGAAACTGAACAGAACTGTTCGAGAGTAGCACCAAGATGGCCGCCGAATAGATCTTAACTCCTCTGATCTACACGGTCCAGTCATGGCCCCAgtttaaaatcataaataataaatattttccatGTTCACCACTCAACAATGAGGGAGTGTTCGTGAACACTGGCTCGTGTTCTATCGTGATCAATATAATCAGTGAGAGCTAAACTCTAGTCATCTGTAATCTTGTTTGTTCAGGAGGAACTCCACGAGATTCTACGATCTGAGTTCATTATTCTTGAGCAGAACCTGAAAGCgtgtggtgttttattctggGAGGATgatccaggaaaaaaaaaaaaaacatatgtcaTCATATCTGGCATCTCTCATACTTTTTAACGTCAGTTAGGATGGTATAAATGTCATAGTGTGGCCCAGGCATAAAGCTTTAATCTCAGCATCTCGTTTCTAGTTCATATGTCAATAGTTAATCTCAAACTACACTTGTAAAAGAAACTTTGAATTTGCATCAGTAGTATGGATTTTATGTACCAACCTCAAATATATGATGTATTTTAGAAAAATCTGGTGTGTTGTTTTCAGTGTGATGATGATATGAAGCACCTTCTACATACCTtcaagaaattatatatatacagtactgtgcaaaagtcttaggcacatgcaaagaaatgctgtagagcaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026946047.2 True 3319 mRNA 0.45 4 4445929 4451919

Neighbor

gene id symbol gene type direction distance location
slc27a1a slc27a1,LOC107757377,LOC107670527,LOC107567246,LOC107672489,LOC107711240 coding upstream 10964 4415771 ~ 4434965 (+)
ptger1c LOC108256829 coding upstream 30675 4408012 ~ 4415254 (+)
LOC113546170 NA coding upstream 44905 4379159 ~ 4401024 (+)
LOC113546181 NA coding upstream 77660 4358897 ~ 4368269 (+)
epn3a LOC108256872,LOC108429673 coding upstream 93438 4330168 ~ 4352491 (+)
pgls pgls coding downstream 19812 4471731 ~ 4476972 (+)
colgalt1a LOC108257422,LOC108429625,LOC107757371,LOC107670492,LOC107672476,LOC107711180,LOC107567242 coding downstream 25894 4477813 ~ 4494446 (+)
gmip gmip coding downstream 46598 4498517 ~ 4524100 (+)
lmx1al lmx1al,LOC108256788,LOC108429662,LOC107672514,LOC107670451,LOC103034908,LOC100696700 coding downstream 76900 4528819 ~ 4565281 (+)
atp13a1 atp13a1 coding downstream 123697 4575616 ~ 4597433 (+)
G338164 NA non-coding upstream 75718 4339204 ~ 4370211 (+)
G338147 NA non-coding upstream 119434 4326052 ~ 4326495 (+)
G338116 NA non-coding upstream 177474 4268246 ~ 4268455 (+)
G338057 NA non-coding upstream 190030 4255557 ~ 4255899 (+)
G337381 LOC108257371,LOC108257372,LOC108429690,LOC103024650,LOC107599305,LOC107670512,LOC107728686 non-coding upstream 402740 3936171 ~ 4043189 (+)
G338252 NA non-coding downstream 225598 4677517 ~ 4679625 (+)
G338246 NA non-coding downstream 266278 4718197 ~ 4731105 (+)
G338658 NA non-coding downstream 789406 5241325 ~ 5241584 (+)
LOC117595846 NA non-coding downstream 925287 5377206 ~ 5386152 (+)
G338683 NA non-coding downstream 936069 5387988 ~ 5392192 (+)
G338163 NA other upstream 90900 4352522 ~ 4355029 (+)
rsad1 rsad1 other upstream 120893 4307922 ~ 4325036 (+)
LOC113546300 LOC108280069,LOC108261210,LOC108257281,LOC108257282,LOC108257284,LOC108257326,LOC108257286,LOC108257289 other upstream 2053392 2358116 ~ 2392537 (+)
LOC117595892 LOC108257284,LOC108257282,LOC108257281,LOC108257289,LOC108257310,LOC108272567,LOC108261104,LOC108280065,LOC108272472,LOC108261175,LOC108279530,LOC100526730,LOC108257326,LOC108257286,LOC108261265 other upstream 2094180 2185892 ~ 2351749 (+)
pbx4 pbx4,LOC107757367,LOC107672472,LOC107670485,LOC103392870,LOC102788435 other downstream 164405 4616324 ~ 4668256 (+)
brd4 LOC108257120,LOC108429657 other downstream 246338 4698257 ~ 4752669 (+)
LOC113546199 pet100,LOC107672445,LOC107563330,LOC107587949 other downstream 305895 4757814 ~ 4762602 (+)
stxbp2 stxbp2,LOC107670524,LOC107587946,LOC107711254,LOC107757364 other downstream 309394 4761313 ~ 4780386 (+)
LOC113535938 tmem196,LOC106588729,LOC107667578,LOC107568813,LOC107755951,LOC107571147,LOC107655099 other downstream 1882070 6333989 ~ 6343909 (+)

Expression


Co-expression Network