cthrc1a (cthrc1a,cthrc1,LOC108257304,LOC108438867,LOC107746934,LOC107675657,LOC107668704,LOC107754923)


Basic Information

Item Value
gene id cthrc1a
gene name cthrc1a,cthrc1,LOC108257304,LOC108438867,LOC107746934,LOC107675657,LOC107668704,LOC107754923
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 2059332 ~ 2065910 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026946068.2
GGAGCGCGCACAGGGAAtgagtactctgtgtgtgtttgggatgaAGATGGGagctgtgtctctgtctctctctctctctccgcttcTCCTCTGCTTCTGGCTCGTTTTTCCGCTCTGTGCGACCCAGAAAGCCAAAGAGAGGAGGACTGTGGGCGCCAGGGACACCGAATTCGTGGACAAGTACAGCGTGTGTGCACAGGGTCCTCCTGGAGTGCAGGGGCGTGATGGTAATCCGGGCGTGAACGGTATTCCTGGTACCCCGGGAATCCCCGGCCGTGACGGGGTGAAGGGCGAgaagggtgagtgtgtgatggagagattCGAGGAACCGTGGAAGCCGAACTACAAGCAGTGTGCGTGGAGCGCGCTTAACTACGGCATCGACCTCGGCAAGATCGCTGACTGCACGTTCACTAAGCTGCGTTCGGACAGCGCCCTGCGAGTGCTCTTCAGCGGCTCGCTCCGGCTCAAGTGTAAGACGGCCTGCTGCGGCCGCTGGTACTTCACCTTTAACGGCGCCGAGTGCACGGGGCCGTTACCCATCGAGTCCATTATCTACCTGGACCAGGGCAGTCCAGAGCTCAACTCCACCATCAACCTGCACCGCACGTCCACAGtGGAGGGCCTGTGTGAAGGCATCAGCGCTGGGCTAGTGGACGTGGGGATTTGGGTTGGGACCTGCGCTGATTACCCGCGCGGAGACGCTTCCACGGGCTGGAACTCCGTATCCAGGATGATCATCGAAGAGCTTCCCAAATAATCCTCTCATTCCGTCTGATCTGCTGTTAGCCGCTGATCTGTAATCAGAAGTACACGGCTAGCCAACATCCTCCATCGCTGTATTCCTCTAAAATCAAAATCAGTATGTTTTGTCAGTGTTATACACTGCTAGCGAGGTAACACTGCTGTTAGCTAAGATAACTAGTCACATTCAGTGCAATGATGTATTTACAGAGCTTGTCAGGGTAGTTAATGTTCCTACACACACTCGTgagactccacacagacagaagcctgagctcaggatccaTACAGGAGTCCTGGGGCTGTGAGGAGGCATCGCTGTCTACAGtgcaaacaataaacaacagaGTGTTTCTTACTGTCCAGAGAGAATTATAATCTCGAAAATATGGTAAACAaacttttttaatctgtttatatgccTGGTTACTCTCAAATATTTTAGAGCAGGGTGTGTCTCCAAGAGACTGGTGGGCGTGTCTTGAGCTGGAAGACACACCCACTAGACGTTTTGGAGTAGTTCCCAACTTCTTTTTCCTACTTGAAGACTTCCAGATGTGGACTCAgccaaacccacacacacacacacacacacacacacacaccctgctagTGTTTGAAGCGTGATTTATTTCCACTGTGTTTAGTTTGTATGTTAAACATGTTATCGTATTTTTTAATCGAATAAATGAGACTGTTTTATACACG

Function

symbol description
cthrc1a Acts upstream of or within cell adhesion; convergent extension involved in axis elongation; and gastrulation. Predicted to be part of collagen trimer. Is expressed in several structures, including axis; margin; musculature system; shield; and yolk syncytial layer. Human ortholog(s) of this gene implicated in Barrett's esophagus. Orthologous to human CTHRC1 (collagen triple helix repeat containing 1).
cthrc1 Predicted to enable Wnt-protein binding activity and frizzled binding activity. Predicted to be an extracellular matrix structural constituent. Predicted to act upstream of or within several processes, including establishment of planar polarity involved in neural tube closure; inner ear development; and ossification involved in bone remodeling. Located in extracellular space. Part of collagen-containing extracellular matrix. Implicated in Barrett's esophagus.

NR:

description
PREDICTED: collagen triple helix repeat-containing protein 1-like

GO:

id name namespace
GO:0005581 collagen trimer cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026946068.2 True 1452 mRNA 0.51 4 2059332 2065910

Neighbor

gene id symbol gene type direction distance location
mc5ra mc5ra,LOC108257298,LOC108438868,LOC103022384,LOC107746932,LOC107552309 coding upstream 20285 2026407 ~ 2039047 (+)
rnmt rnmt,LOC107746930 coding upstream 55998 1991814 ~ 2003334 (+)
seh1l seh1l,LOC107668717,LOC107746927 coding upstream 126632 1920935 ~ 1932700 (+)
psmg2 psmg2 coding upstream 167633 1883445 ~ 1891699 (+)
grhl2b grhl2,grhl2b,LOC107748368,LOC107672862,LOC107550099,LOC107552317,LOC107738316,LOC107698657 coding upstream 217284 1804670 ~ 1842048 (+)
rims2b LOC108257276 coding downstream 8973 2074883 ~ 2143022 (+)
LOC113546187 LOC108257276,LOC108412938,LOC107668707,LOC107689551,LOC107559391 coding downstream 90645 2156555 ~ 2163523 (+)
LOC113546299 LOC108257284,LOC108257282,LOC108257326,LOC108257286,LOC108257289 coding downstream 143882 2209792 ~ 2240423 (+)
LOC117595862 rdm1 coding downstream 382306 2448216 ~ 2453296 (+)
rdm1 rdm1 coding downstream 475572 2541482 ~ 2551073 (+)
G336849 fam210a,LOC107675659,LOC107754921,LOC107566562,LOC107668710 non-coding upstream 74836 1965976 ~ 1984496 (+)
G336482 NA non-coding upstream 216362 1842589 ~ 1842970 (+)
G336481 NA non-coding upstream 216796 1821132 ~ 1842536 (+)
G336261 NA non-coding upstream 301928 1756185 ~ 1757404 (+)
G336256 pabpc1,LOC107672855 non-coding upstream 318325 1738163 ~ 1741007 (+)
LOC117595895 NA non-coding downstream 135870 2201780 ~ 2203741 (+)
LOC117595896 NA non-coding downstream 176275 2242185 ~ 2259536 (+)
G336991 NA non-coding downstream 177583 2243493 ~ 2244230 (+)
G337052 NA non-coding downstream 331193 2397103 ~ 2397302 (+)
G337059 rdm1 non-coding downstream 384609 2450519 ~ 2551280 (+)
G336822 ldlrad4 other upstream 113466 1876274 ~ 1945866 (+)
polr2k NA other upstream 378980 1675040 ~ 1680352 (+)
G336433 parp10 other upstream 399873 1657317 ~ 1659459 (+)
G336334 NA other upstream 723758 1269809 ~ 1335574 (+)
LOC117595892 LOC108257284,LOC108257282,LOC108257281,LOC108257289,LOC108257310,LOC108272567,LOC108261104,LOC108280065,LOC108272472,LOC108261175,LOC108279530,LOC100526730,LOC108257326,LOC108257286,LOC108261265 other downstream 119982 2185892 ~ 2351749 (+)
LOC113546301 LOC108257282,LOC108257281,LOC108257284,LOC108257326,LOC108257289,LOC108257286,LOC108257310 other downstream 236235 2302145 ~ 2340261 (+)
LOC113546300 LOC108280069,LOC108261210,LOC108257281,LOC108257282,LOC108257284,LOC108257326,LOC108257286,LOC108257289 other downstream 292206 2358116 ~ 2392537 (+)
rsad1 rsad1 other downstream 2242012 4307922 ~ 4325036 (+)
G338163 NA other downstream 2286612 4352522 ~ 4355029 (+)

Expression


Co-expression Network