gmip (gmip)


Basic Information

Item Value
gene id gmip
gene name gmip
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 4498517 ~ 4524100 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026946092.2
GAAGAGAAGTGTACTTAGAACAAATGTGTGAGGAGAGAAAGAGTCACATGTCCGCTTCAGGGCCTGCTCAAATGGTAGCACAAATCTAAAGAGTGACCCGGTGCTGCTGGGTTTGGATCTTGGATCTATCTTAAAATCATCAGCATCTTTTGTGAAGTTGATGAGAGTAATGAGGAGGTGAAGATCCACTCTGATGTCTGCTGGTGGTTCGGGGATGGACGACTCGATGGAGGAGACGACAGCGGCCGCACCATTACGGCAACCGAAGGaagGTGGTGTCCTAACTAGACAGCCAGCGACGAAACGCTACAGTGAGATTTTACGGGACTTTGATAACTTGGAGCTTTCCTTAGTGAGCAGCACGTCTGTCGAGGAGCTACTCGGAGACCCTGATGTTCAGTCGCTCTCAGAAACAGTAGACGCAACACTGGATGATTTGTCTAGTGAAGATGTGGACAACACACTGGTCTGTCCTGatggagaagaaaaagatgGTAGCATGTCGGCCCAGGATTCTGATGTGACCATGTGTCGCTGCGAGGGCGGCGTGGAGCTCGCCTTACAGTACTCCAAGATGTGGTGCCGCTACGCCAAGGACCTCCTCACCTGGATAGACAAGAGAATCAGCCTGGAGCAAGAATTTGCCAAGAATATCATGAAGGCAGCGGAAACAACGAAGTCTTGTATTGctcagcagGACCTGATGCCGCTGCAGTCGATCTACAGCATGGTCCTGGAGCAGGACATAAAGAGCAGCATATCAGCCAAACAGACCACTGAGCTTCTACAGCTACGCTGTTACCAGGCTTTGTCTGCCAAGAGGAATGAGATTGACAAGTGGCGTCGGGAGTTTAAAGAGCAGTGGACAAGGGAGCAGAAGAGAATGAACGATGCGGTTGCGGCGCTAAAGCGAGCTCGACAGCAGTACCTCCAGCGCTGTGAGGAGCTGGAGAAAGCCAAAGCCATGACGGCCAAAGGAGTCGACGAACTCAGTGGCACAAAGACCCTGGACAAGAGGAGGAAGTCTCAAGATGAGGCTCAGTCCAAGGTTTCAGAGGCTGAAGTGTTATACAAGCAGTGTGTGAGCGATGCGAAGGCTCATCAGGACGGGCTGGAGAAAGTGAAGGAGAGGATCATCGTCCACATCCGCAAGCTCATCTGCCAAGGAGACAACGTGCTCAAAGAGGTGACGGTGAACATGTTCTACTACCAGAGACAGCAGATGGAGCCGATCCCTTTAGGATACCAGAACCTGGAGCTGACCTGCAGGCCGTGTGAGCCCGGAGAACCCTACCTGCTCTACATCTCCAGGAAGTGCGGACCTGAGCAGCCCCTTCAGGTCTTCACCTTCCAGGAGTTCATCCCTCAGAGCAAGAGAACTCGTAAAGTGAGTAACGCCCTGATGCCGGTGCAGGACTCGTCTCCTCTACCCGAGGACATGAAGCGCTACAGTGATGGAAGACGCATTGGatacagtgacagtgacagcaTCGGAGGAAGTCTGGAGTCTCTCTCCAGTCCAGCCCATATGAATAAGCTGCCGAAAGCTCCATCTACTGGAACTGTGTCTTCTGATGACCTGGACGAGAGAGAACTGAGCACTgaagctgAGAGTTCTGATCCTCTGAACGACAGTAACGGTACCTACTCTAAGGTTCGCACCACGTCCCGAGCTGCTCTCACTCACCGCCTCAAGAAAACAAAGAGCAAAATGCAAAAGTGCAAACTGTGCGACAACTTCATCCTGGTCAATGGCATCGAGTGTGAGGAGTGTGGCTTCGTGGTGCACAGGAAGTGTCTGGACCTGTGCCACATCGAGTGTGAGCGCAGGAGGGGGGTTCTCTTCGGGGTGGAGTTCTCCTCATTGCCCAGAGATCCGCCGCATGATGTTCCCTTCATTGTGCAGCGCTGCACTGAAGAGATCGAGAGCCGAGCACTCACAGTGCAGGGTGTTTATCGAGTTAGTGGATCCAAACCCAGAATCCTGAAGCTGTGTCACGCTTTTGAGTCCCAAAAAGACCAGGTTGACCTTTCGGACCTCTCACCCCACGACATCACTTCCGTTCTCAAGCTCTTTTTCAAAGATCTTCCTGAGCCGTTACTCACCTTTGACCTTTACAACGAGTTCATCAACGCTGGAAAAGACATTCAGCGGCTCACTGAGAGAGACCATTCAGCTGAGAGTGCTCAGATAGTGGAGAACATAGTGAGCAATCTGAAGCAGATTCTAGCTCGACTTCCTCCCTGTAATTACAGCACACTGCAGTACATGATGGCTCACCTGTACAGGATATCTGAGTGTGAAGAGAATAAGATGTCTCCCGGTAACCTGGGCATCGTGTTCGGCCCCACTCTCCTGCGCCCCCTTGTGTCAGGCGACGTGTCCATGATCGCCCTTTTGGAAAGCAGTTACCAGGCCCTGCTGGTGGAGTTCATGATCTCACACCAAGAAAAAATCTTTAGCCCTGATCCGAGGATGTGCATACCTCTTCCACCTTTACCCACCATCCCATCCCCAGGGACGGAGCCTGACACGGCTGATGTGTGTGGAGCCTCGACCAGAGAACGGCCGCGGTCTCTCGAGtcgTGGCTATGAGGGACATTCCAGCCTCTGCGTGGGGTCACTCTGAAGGTGCACTTGTGGACCCAGTCGAGTCGTGAAGCAACCTAGGTAGTGTACTCCGACGAGAGAACTCCAATGAGGAACGTGGTGCTACAAATCAGCGGGAATTCTGGGAGGTTGTGCGTGTACGACAGCTGCAGCTCTGCAGCACTAGAGactagagaaaaataaacacctccacctccagcaGTGGCCATGCCCCTCAGCACTGTGAATCCTGAACCAAACATTGCCATTAGGACAGAAATGATGGATAAACGACGGGGGTCACCTGGTTTATGAGAGTGGTACAGTCCACAGGAAGTGACCCGATGGATATGGAGACACAGAACCATTTTGTCCAGACTGAACCTGAGAAGAAGCAGCTCAAGAAAAGATGAACAAATCCATTTTGGAAGAAATAAGCAGCCATCTGCTGATGCATTGTTAGAAAATAAGGTTCCTCaggggttcttcaagggttccttGGATAATTGTGGGTTTGTAGCTTCCGAAATGGTTCTACAAGgaaacactgaataaatgatTAGCTCTTCAAGGTTACGTTTAACGTGGTTTAAGATACATACGTGCAtaattatacaatttttttaacacaatatgGCTTGGCTGTCTTAAATTattgtgcatttcatttaacATAGAACCCAGCGCTAAGATTCTTCTAGCAGTATTAGCTTCTTGATAAAACTTTTGCAGAGACGTGATTCCATACTAACTCTCTAAGTCATCCTTAATTACTGTATAAGACAGGAAATAATTTTAGGAATATTTTAGGGCAGCATGCAGTTCATGGATAATAATTGTtctattttgcatatttgatttttgcagactgtcaaaaaaaaaaaattatgttccCCAGCGGaacctaaatatatttttgtacaaaGAACAAACTGAGtttttggcagaaaaaaaaaaaatctatgatttaatttatgtaaGATTCTCCAGAGATTCCAGAAAATTCTACTTTT
>XM_034298837.1
GGAAGAGAAGTGTACTTAGAACAAATGTGTGAGGAGAGAAAGAGTCACATGTCCGCTTCAGGGCCTGCTCAAATGGTAGCACAAATCTAAAGAGTGACCCGGTGCTGCTGGGTTTGGATCTTGGATCTATCTTAAAATCATCAGCATCTTTTGTGAAGTTGATGAGAGTAATGAGGAGGTGAAGATCCACTCTGATGTCTGCTGGTGGTTCGGGGATGGACGACTCGATGGAGGAGACGACAGCGGCCGCACCATTACGGCAACCGAAGGGTGGTGTCCTAACTAGACAGCCAGCGACGAAACGCTACAGTGAGATTTTACGGGACTTTGATAACTTGGAGCTTTCCTTAGTGAGCAGCACGTCTGTCGAGGAGCTACTCGGAGACCCTGATGTTCAGTCGCTCTCAGAAACAGTAGACGCAACACTGGATGATTTGTCTAGTGAAGATGTGGACAACACACTGGTCTGTCCTGatggagaagaaaaagatgGTAGCATGTCGGCCCAGGATTCTGATGTGACCATGTGTCGCTGCGAGGGCGGCGTGGAGCTCGCCTTACAGTACTCCAAGATGTGGTGCCGCTACGCCAAGGACCTCCTCACCTGGATAGACAAGAGAATCAGCCTGGAGCAAGAATTTGCCAAGAATATCATGAAGGCAGCGGAAACAACGAAGTCTTGTATTGctcagcagGACCTGATGCCGCTGCAGTCGATCTACAGCATGGTCCTGGAGCAGGACATAAAGAGCAGCATATCAGCCAAACAGACCACTGAGCTTCTACAGCTACGCTGTTACCAGGCTTTGTCTGCCAAGAGGAATGAGATTGACAAGTGGCGTCGGGAGTTTAAAGAGCAGTGGACAAGGGAGCAGAAGAGAATGAACGATGCGGTTGCGGCGCTAAAGCGAGCTCGACAGCAGTACCTCCAGCGCTGTGAGGAGCTGGAGAAAGCCAAAGCCATGACGGCCAAAGGAGTCGACGAACTCAGTGGCACAAAGACCCTGGACAAGAGGAGGAAGTCTCAAGATGAGGCTCAGTCCAAGGTTTCAGAGGCTGAAGTGTTATACAAGCAGTGTGTGAGCGATGCGAAGGCTCATCAGGACGGGCTGGAGAAAGTGAAGGAGAGGATCATCGTCCACATCCGCAAGCTCATCTGCCAAGGAGACAACGTGCTCAAAGAGGTGACGGTGAACATGTTCTACTACCAGAGACAGCAGATGGAGCCGATCCCTTTAGGATACCAGAACCTGGAGCTGACCTGCAGGCCGTGTGAGCCCGGAGAACCCTACCTGCTCTACATCTCCAGGAAGTGCGGACCTGAGCAGCCCCTTCAGGTCTTCACCTTCCAGGAGTTCATCCCTCAGAGCAAGAGAACTCGTAAAGTGAGTAACGCCCTGATGCCGGTGCAGGACTCGTCTCCTCTACCCGAGGACATGAAGCGCTACAGTGATGGAAGACGCATTGGatacagtgacagtgacagcaTCGGAGGAAGTCTGGAGTCTCTCTCCAGTCCAGCCCATATGAATAAGCTGCCGAAAGCTCCATCTACTGGAACTGTGTCTTCTGATGACCTGGACGAGAGAGAACTGAGCACTgaagctgAGAGTTCTGATCCTCTGAACGACAGTAACGGTACCTACTCTAAGGTTCGCACCACGTCCCGAGCTGCTCTCACTCACCGCCTCAAGAAAACAAAGAGCAAAATGCAAAAGTGCAAACTGTGCGACAACTTCATCCTGGTCAATGGCATCGAGTGTGAGGAGTGTGGCTTCGTGGTGCACAGGAAGTGTCTGGACCTGTGCCACATCGAGTGTGAGCGCAGGAGGGGGGTTCTCTTCGGGGTGGAGTTCTCCTCATTGCCCAGAGATCCGCCGCATGATGTTCCCTTCATTGTGCAGCGCTGCACTGAAGAGATCGAGAGCCGAGCACTCACAGTGCAGGGTGTTTATCGAGTTAGTGGATCCAAACCCAGAATCCTGAAGCTGTGTCACGCTTTTGAGTCCCAAAAAGACCAGGTTGACCTTTCGGACCTCTCACCCCACGACATCACTTCCGTTCTCAAGCTCTTTTTCAAAGATCTTCCTGAGCCGTTACTCACCTTTGACCTTTACAACGAGTTCATCAACGCTGGAAAAGACATTCAGCGGCTCACTGAGAGAGACCATTCAGCTGAGAGTGCTCAGATAGTGGAGAACATAGTGAGCAATCTGAAGCAGATTCTAGCTCGACTTCCTCCCTGTAATTACAGCACACTGCAGTACATGATGGCTCACCTGTACAGGATATCTGAGTGTGAAGAGAATAAGATGTCTCCCGGTAACCTGGGCATCGTGTTCGGCCCCACTCTCCTGCGCCCCCTTGTGTCAGGCGACGTGTCCATGATCGCCCTTTTGGAAAGCAGTTACCAGGCCCTGCTGGTGGAGTTCATGATCTCACACCAAGAAAAAATCTTTAGCCCTGATCCGAGGATGTGCATACCTCTTCCACCTTTACCCACCATCCCATCCCCAGGGACGGAGCCTGACACGGCTGATGTGTGTGGAGCCTCGACCAGAGAACGGCCGCGGTCTCTCGAGtcgTGGCTATGAGGGACATTCCAGCCTCTGCGTGGGGTCACTCTGAAGGTGCACTTGTGGACCCAGTCGAGTCGTGAAGCAACCTAGGTAGTGTACTCCGACGAGAGAACTCCAATGAGGAACGTGGTGCTACAAATCAGCGGGAATTCTGGGAGGTTGTGCGTGTACGACAGCTGCAGCTCTGCAGCACTAGAGactagagaaaaataaacacctccacctccagcaGTGGCCATGCCCCTCAGCACTGTGAATCCTGAACCAAACATTGCCATTAGGACAGAAATGATGGATAAACGACGGGGGTCACCTGGTTTATGAGAGTGGTACAGTCCACAGGAAGTGACCCGATGGATATGGAGACACAGAACCATTTTGTCCAGACTGAACCTGAGAAGAAGCAGCTCAAGAAAAGATGAACAAATCCATTTTGGAAGAAATAAGCAGCCATCTGCTGATGCATTGTTAGAAAATAAGGTTCCTCaggggttcttcaagggttccttGGATAATTGTGGGTTTGTAGCTTCCGAAATGGTTCTACAAGgaaacactgaataaatgatTAGCTCTTCAAGGTTACGTTTAACGTGGTTTAAGATACATACGTGCAtaattatacaatttttttaacacaatatgGCTTGGCTGTCTTAAATTattgtgcatttcatttaacATAGAACCCAGCGCTAAGATTCTTCTAGCAGTATTAGCTTCTTGATAAAACTTTTGCAGAGACGTGATTCCATACTAACTCTCTAAGTCATCCTTAATTACTGTATAAGACAGGAAATAATTTTAGGAATATTTTAGGGCAGCATGCAGTTCATGGATAATAATTGTtctattttgcatatttgatttttgcagactgtcaaaaaaaaaaaattatgttccCCAGCGGaacctaaatatatttttgtacaaaGAACAAACTGAGtttttggcagaaaaaaaaaaaatctatgatttaatttatgtaaGATTCTCCAGAGATTCCAGAAAATTCTACTTTT

Function

symbol description
gmip Predicted to enable GTPase activator activity. Predicted to be involved in activation of GTPase activity and negative regulation of GTPase activity. Predicted to act upstream of or within intracellular signal transduction. Predicted to be active in plasma membrane. Orthologous to human GMIP (GEM interacting protein).

NR:

description
GEM-interacting protein-like isoform X1

GO: NA

KEGG:

id description
K20653 GMIP, ARHGAP46; GEM interacting protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026946092.2 True 3603 mRNA 0.49 20 4498518 4524100
XM_034298837.1 False 3601 mRNA 0.49 20 4498517 4524100

Neighbor

gene id symbol gene type direction distance location
colgalt1a LOC108257422,LOC108429625,LOC107757371,LOC107670492,LOC107672476,LOC107711180,LOC107567242 coding upstream 4071 4477813 ~ 4494446 (+)
pgls pgls coding upstream 21545 4471731 ~ 4476972 (+)
LOC113546278 LOC108256875 coding upstream 46598 4445929 ~ 4451919 (+)
slc27a1a slc27a1,LOC107757377,LOC107670527,LOC107567246,LOC107672489,LOC107711240 coding upstream 63552 4415771 ~ 4434965 (+)
ptger1c LOC108256829 coding upstream 83263 4408012 ~ 4415254 (+)
lmx1al lmx1al,LOC108256788,LOC108429662,LOC107672514,LOC107670451,LOC103034908,LOC100696700 coding downstream 4719 4528819 ~ 4565281 (+)
atp13a1 atp13a1 coding downstream 51516 4575616 ~ 4597433 (+)
LOC113546190 LOC108257430 coding downstream 75050 4599150 ~ 4611600 (+)
xab2 xab2,LOC102796593 coding downstream 257191 4781291 ~ 4794558 (+)
camsap3 camsap3 coding downstream 274241 4798341 ~ 4840522 (+)
G338164 NA non-coding upstream 128306 4339204 ~ 4370211 (+)
G338147 NA non-coding upstream 172022 4326052 ~ 4326495 (+)
G338116 NA non-coding upstream 230062 4268246 ~ 4268455 (+)
G338057 NA non-coding upstream 242618 4255557 ~ 4255899 (+)
G337381 LOC108257371,LOC108257372,LOC108429690,LOC103024650,LOC107599305,LOC107670512,LOC107728686 non-coding upstream 455328 3936171 ~ 4043189 (+)
G338252 NA non-coding downstream 153417 4677517 ~ 4679625 (+)
G338246 NA non-coding downstream 194097 4718197 ~ 4731105 (+)
G338658 NA non-coding downstream 717225 5241325 ~ 5241584 (+)
LOC117595846 NA non-coding downstream 853106 5377206 ~ 5386152 (+)
G338683 NA non-coding downstream 863888 5387988 ~ 5392192 (+)
G338163 NA other upstream 143488 4352522 ~ 4355029 (+)
rsad1 rsad1 other upstream 173481 4307922 ~ 4325036 (+)
LOC113546300 LOC108280069,LOC108261210,LOC108257281,LOC108257282,LOC108257284,LOC108257326,LOC108257286,LOC108257289 other upstream 2105980 2358116 ~ 2392537 (+)
LOC117595892 LOC108257284,LOC108257282,LOC108257281,LOC108257289,LOC108257310,LOC108272567,LOC108261104,LOC108280065,LOC108272472,LOC108261175,LOC108279530,LOC100526730,LOC108257326,LOC108257286,LOC108261265 other upstream 2146768 2185892 ~ 2351749 (+)
pbx4 pbx4,LOC107757367,LOC107672472,LOC107670485,LOC103392870,LOC102788435 other downstream 92224 4616324 ~ 4668256 (+)
brd4 LOC108257120,LOC108429657 other downstream 174157 4698257 ~ 4752669 (+)
LOC113546199 pet100,LOC107672445,LOC107563330,LOC107587949 other downstream 233714 4757814 ~ 4762602 (+)
stxbp2 stxbp2,LOC107670524,LOC107587946,LOC107711254,LOC107757364 other downstream 237213 4761313 ~ 4780386 (+)
LOC113535938 tmem196,LOC106588729,LOC107667578,LOC107568813,LOC107755951,LOC107571147,LOC107655099 other downstream 1809889 6333989 ~ 6343909 (+)

Expression


Co-expression Network