tanc2a (tanc2,LOC107662401)


Basic Information

Item Value
gene id tanc2a
gene name tanc2,LOC107662401
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 2845407 ~ 2890143 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026946102.2
TTGTGGTTTTCTCGcagctcgctctctctctttctcgctctacCCTTTGTGGGCTCTGGAGTCCAGGGCCTGCAGACTACCCGCGATTCTTGTTGAAGTCTGAGCCAGCGGTTTTCTCTCTGGGGCCAGCTCGCTCTCGAAAGTGCCTCCTCCTCCCAGAAGGCCAAAGGGAGCAGAGCGTGGACGAGCCAGCTCATTCTCCTCGGTGCTCTCTCCGGCTCTGCgctggaagaggaggaggagacggAGTATTGGAGCGATGGACGTGAGGAAGGTGTGCACTCGGAGCGCATGGCTGAGGAGGAAGAGGCCTCGGCCATACGAGCGGACCAggttctcctcctcctcctcttccctgCTGCGGCGCTGGATGTCTCGGCTATGCTGCGCGTCTCGGGCCTGTTCCTCCAGCCTCAGCGCTTCGGATCAGTCACTCCTGCAGCCAAGCTGCTGCACCAGGCCGAGAGGAGCTCAAGGAATGGTGGGAGACGCTGGAGACAGCGGGACAAAGGAGTACCAGCAGGAAGAGTGGGAGCAAGCGGGAGAGGACCAGGATGAGGAAGTGGCAGAGGAAGACAACGACGACAACGATGGTGACCGTGATGACGATAACAATAACGAAGATGCCaatgattatgaaaatgaagaggaagatgatgaagaagttgatgtggatgtggatgtggatgagTGTGAACCAAAAGACGAAGAAGAAAGAGgagaagACAATCAGGATCTGGGTCCCCCTCCGTCAGTGGACGAGGCTGCTAATACCCTGATGACGCGACTCGGGTTCCTGCTTGGGGACAAAATGGCCGAGGGGTCCGACAGAGCTGCATACGGCTTTGAGGAACCAGAAGAAAGTCagGCTGTCTCCATGACTCAGAGAATCAGTCCATGTTCCAGCCTGGCCAGCAGCTCAGCGTCTCCCCCTCCTGGCAGCCCCTGCTCCACCCTTCCCGCTGGTGGTCCGGGCAGCGCCGGTGCCTACGGCTCCATCACGAGCCCCACCTCCACGCTGGAGAGCAGAGACAGTGGCATCATCGCCACACTGACTAGTTACTCGGAGAATGCGGATCGGGGCGGGAAGCACAGCGATGGCTCACGCCTCAAACTGCGGCAGACAGGGAAATCTTCAGGCGGCGACTCCTTCCTGTACCGCGTGGACGAGAACATGGCCGCCTCCACATACAGCCTCAACAAAATCCCAGAGAGAAGCCTAGAGCACTCCGCCTCCCACTCCGCCCACTCCATCCCCCTCTACCTCATGCCCCGCCCAAACTCTGTGGCCGCTACGAGTTCTGCTCACCTGGAGGACTTGGCGTACCTGGATGAGCAGCGCCAGGCTCCGTTGCGGACGTCCCTGCGAATGCCACGCCAGAACTCCGGCGCCGGACGATCCGGGAATGACctaagagTGCGGTTCGCACCGTACCGCGCACCGGACATCGCCCTGAAGCCGCTGCTGTTCGAGGTGCCGAGTGTGACGCCTGACTCTGTGTTTACGGGACGGGAGTGGCTGTTCCAGGAAGTGGACGCTCAGCTGCGCAGCGGTGAAGCCACCAGTCGGGGCGTGGTCATCGTGGGCAACGTGGGTTTCGGCAAAACCGCCATCATCTCACGACTGGTGGCTCTGAGCTGCCACGGCAACCGCATGAGACAGATCGCCTCAGAGAGTCCGCACGCCTCGCCCaaacatGGAGACACACTGCCCCTCAGTCAGCCCCAGTCGGCTCATGGGACGCTGGTTGGAGGCAGCAGTTGCCCCGGGACACCTGAGATGAGGAGACGGCAGGAGGAGGCGCTCAGGAGACTCGCATCTCAGgtggtgGCGTATCACTACTGCCAGGCGGATAACGCCTACACGTGTCTGGTGCCGGAGTTTGTACACAACATTGCGGCGTTGCTGTGTCGAGCTCCTCAGCTGCAGGCGTACAGAGAGCTGCTGCTGCGACAGCCGCACCTACAGAGCCTGCTCAGCCTGCGCTCCTGCGTCCAGGAACCAATCACGGCCTTCAGCCGCGGCCTGCTCGAACCGCTGCACGCGCTGCACAGGgAGCGTAAGGTGGCATGCGACGAAGATCTGATCATCCTGATTGACGGCCTGAACGAAGCCGAGTTCCACAAACCGGATTACGGCGACACGATCGTGTCCTTCCTGTGTAAAACCATCGAGCGTTTCCCTCCATGGCTCAAACTGGTGGTGACGGTCAGGACCTCGCTACAGGATGTCACTCGGCCGCTGCCGTTCCACCGGATATCTCTGGACCGTCTGGATGAGAGCGACGCCATCGACTCGGACCTGCAGGGTTACATCCTGCACCGCCTGCACTCCAGCCAGGAGATCCAGAACAATGTGGCACTGAACGGGAAGCTGGACAACGCCGCCTTCGCCAAACTCAGCGCTCACCTGAAAGGCCTGAGCCGCGGCTCGTACCTGTACCTGAAGCTCACGCTCGACCTGATTGAAAAGGGCTACCTGGTCCTAAAGAGCTCCAGCTACAAGgtGGTGCCGGTGAGCCTGGCCGAGGTgtacctgctgctgctgaacaTGCGTTTCCCCACGCAGTCATCGTTTGAGCGAGTGCTGCCGCTGCTCAACGTGGCCGTGGCGTCTCTGCACCCGCTGACGGACGAGCAGGCGCTGGGGGCGGTGAACGCTGGGGTCGTACGTGGCATGGCGCTCCACTGGGACGACTTCCAGCAGCGTGAGCTCCTCGCACCCTTCCTCATGAAGAGGAGAGACGGCACGCGCATGTTTGTCCACGCCTCCTTCAGAGAGTGGCTCATCTGgagagaggatggagagaagACCAAGTTCCTCTGTGACcccaggagtggtCACACACTGCTGGCCTTCTGGTTCTCGCGGCAGGAGGGCAAACTGAACCGACAGCAAACCATCGAGCTCGGCCACCACATTCTCAAAGCACACATCTTcaaggGTCTGAGTAAGAAGGTCGGGGTTTCCTCGTCTGTCCTGCAGGGGCTGTGGGTGTCGTACAGTACAGAGGGTCTGTCTGCTGCCCTCGCATCCCTGCGCAACCTCTACACCCCCAACATCAAGGTCTCTCGTCTGCTCATTCTGGGCGGAGCCAACGTGAACTACCGTACGGAGGTGTTGAACAACGCTccggtgctgtgtgtgtatgcacaccTGGGTTATATGGAGATGGTGACGCTGTTGCTGGAGTTTGGCGCTGATGTGAACGGAGCATCGGAGAGCGGCCTCACACCGCTGGGCTACGCAGCCGCCGGcggtcacctgaccatcatcaCCACCCTCTGTGCCAAAAACGCAAAGgtggaCCACGTGGACAGGAACGGTCAGTGTCCTCTGGTGCACGCGGCTCTGAGAGGACACCTGGAGGTGGTGAAGTTCCTGCTGGAGTGTGAGTGGAGTGCTGAGGCAGCTTTCAGCAAAACACACGCTGTACAGCAGGCCCTTATAGCAGCAGCTAGCATGGGCtatactgagattGCGTTGTACCTGCTGGACCTTCCAGAGAAGgacgaggatgaggaggagCGCCCTCACATCAACAGCTTCGACACGCTGTGGGgggaaacagCTCTGACTGCAGCAGCAGGCAGAGGGAAGTTGGATGTGTGTAGGTTGTTGTTGGAGCAGGGAGCCGCCGTCTCTCAGCCTAACCGCCGCGGCCGCATTGTGCCGCTGTTCAGTGCTGTCCGTCAGGGCCACTGGcagattgtGGAGCTTCTTCAGAATCACGGCGCTGATGTGAACATGGCGGATAAACAGGGCCGCACTCCTCTAATGGTGGCCGCGTCTGAGGGTCATCTGGCCACGGCAGAGTTCCTGCTGGAgcaggGTGCATCATTGGCCCTGATGGATAAGGAGGGGCTCACGGCTCTGAGCTGGGCGTGTCTGAAAGGCCACCTCCCATTGGTCCGTGCGTTGGTGGAGAGAGGAGCGGCGACGGCTCATGCTGACAAGAGCGGCCGCACGCCGCTGGACCTCGCTGCCTTCTACGGAGATTCAGAAGTGGTACAGTTCCTGGTGGAGCACGGCGCCATGATCGAGCATGTGGACTACAGTGGCATGAGGCCTCTGGACAGAGCCGTGGGCTGCAGGAACACATCGGTGGTGGTAGCCCTGCTGAAGAAGGGTGCCAAGATAgGTCCAGCAACGTGGGCCATGGCCACCTCCAAGCCAGACATCATGATTGTCCTCCTGAGCAAGCTGATTGAGGAAGGAGATGGATTCTACAAGAAGGGAAAGGTGAAGGAAGCAGCCCAGCGCTATCAGTATGCCCTGAAGAAGTTCCCTCGCGAAGGTTTCACTGAGGATTTGAAGAGTTTCCGTGAGCTTAAAGTCTCCCTGCTCCTCAACTTGTCCCGTTGCCGCCGCAAAATGAACGACTTTGGCATGGCGGAGGAGTTTGCCTCCAGAGCTCTAGAGTTGAAACCCAAATCCTATGAGGCCTTTTACGCACGAGCCCGCGCCAAACGCAGCAGCAGGCAATTCCACGCAGCCCTGGAGGACCTGAGTGAAGCCATACGCCTGTGTCCCAATAACCGCGAGATCCAGCGTCTGCTGCAGCGTGTGGAGGAGGAGTGTCGCCAAGTCGCTCAGCAACAGCAGCTGGATCCACCTCCTTCCCCTCCCCATGAGCAAGCCCCTCATCCTCCTCCGCTGGAGCCCCGCCTGTCTGACATGGAGCCAGTGCAGGACCTGTTTGAAGAGGACGAAGATTACCTGGAGCGGGATTTGGATGGTCTTCCACTAGCTGTGACTGCCGAGCCTCGTTCCAGTCCTTCAGGTCTGCCTGTCATTCAGAACATGCCACCTTCCCCAAGCCATTTACCCTACCTTTCCGGAAGCGCTTCCATGGGCCAGGCTTATGATCTGCGGCCCAGTCCTCCTTCCATGTCCTCTCCGACTCGCCAGGGTTACCAGTCCACCTCTCCGTCGCTCTCTCCAACTCACCAGACCTCCCACTATCGTCCAAGCCCTCCTCACACCTCTCCGGCCCATCAagcttcctcttcttcctcctcctcatcctacCACTTCAGCCCCCCTCCCTCGCCTTTACGCCGTGGAGCCTACACCTCAGAGAATGCAGCCATCTACAGACCACAGTCTGcctctgtcagctcaaaccgcTATCAACAAGAGGGACTTTCTGGCAGGCCCAAATCGCCGCTGGCTAAAATGGGCAGCCAGCGCTCACTGCAGCAGCAAACCCAGTGGCTGCAGCCAGCCAAGGCCCAGATCATCCGCACAAATCAGACCAGTGCCTCGGTCCACTCCAGCGCTTACTCTCATGTGGCCCAGTCCATGAGAGGACATGTTCCTGGGGATGTCGACGAGCTTGGGGAGGTAGCCTATTCAAGCCCACTGCAGATACAGGGCAGTGTGTACATAGAAGAGGAGCTCCCTCAGAGGCCCTCACATGCATACAGGCCCAGCATCACAGGCCCCCGTTATGGTCAAATGGCACCACAGATCAGCCGCAGCCAGTCAGCTGCTTATTATCCCGTCCAGCCACATGAAATTGAGCGCCAACCTCAGTTATCATCACCTGAGCACCCTCACGGTCTCCGGCGCCCACTAAGTGCCACTGGCCCTACACCACGGCCGCTCATCCACTCTCAGAGCACTGGCCTGCGCTTCTCACCTTCTAGCAGCAGTCTGGCAGCAGGATCCACCTCTAATTTAGGTCCAGGCTTCAGGCCCTCGGCTTCAGCACAACAAATGGAAATCCCACTGAAGCTGGCATATGAGGGTGGATACAGCGATGACCTGTCACCAGTTTCTCCACCACAAGGCACTGACATGCGACTTTTAGGGGGGACTTACCCAGGTGAGGCTATGCGGGCACGCAGCACGCCCTTCATGGGCATCATAGACAAGACAGCACGGACTCAGCAGTTTCTTCAGCAACCttcatcatcttcctcttcatcaCGCACTTGGGCTGTGTCATCTTTAGATACTGTGGTCTCCAGCCCTGCCACATCACCTGGCAACATGACCTATGGGCACCTTGCCTACTACAATCGCACCAACAATGCCCACAACGGACACCTAGTGGAGGATGACTACTATCGGCCAGATAACACAGGCCGGGTGAGTCAGGCACCCACATACCCAGACGTTAAGGTGGCGAGAACGCTGCCGGTCTCGCAGGCCTATCAGGACAGCGACTACAGACAGGCGGGACATGGGGAGCGCCAAGGTCCTTCCTCTCCTATCAAACCAAAGAGGCCCTTTGTTGAGTCCAACGTTTGAGGCACAAATTGTAGATATGTACTAGGACTCACATGGTTTCCCCCTCACTTTGATGTAATCCGATCTTAAAACTGAATATATGGACCTGAAAGGAGATGTTGTAGAAAGCATCTGCTTTGGGATCAGGACATGCAGGATACTTCAGGAGCCTCAGTTGGAGTGGACCGCCATAACTGCTGTATGCTAGCTAGGGATGCGGCAATATGGGATATTAGTATCAGTCATACAGATAGTCTGACCACATGTGGCTTTCAGAAAAGGGACATTTCATCAGTAGTGACCTTAAGCTTTGTTATTTAGATGGACAGTAGTACTACAGAGCATAAAGCATCCAATATGCAGGACTTGTGCAAGCACATCTGGTGATTTAACTATAAAATTTCATTGATATAAATTGCTTACATTTGTAGGAAATGGTGGAACAGAGCTTCTCAACAGTCAGTACTTACACCTGACACACCAAGCTATCTGATGTCCTTAGTTTTTACTGCATTTCCCACATAGTTAACGCTAGTTGACTGATTAAATTCCTCAGCATACTTCATGGAGAAGCAACATTTGGCTGGCTTCTACaaaaaatatagatagatagactttattgatcccatgagggaaattttTGAAAAGCGGTCTTCTCACAGTGTGTCATGGGACATCCAGGCTCTGTCTTCTTAATGTAAATCTTTTTCACTATAGACGCAATGCAAAACCTCGACTCTGGtgggactcgaacccacaacctttgaATCACTCCACTAAGTGCCACTTAGAAGTCCAATGCGCTATCCATTGCGCCACAGAGCCACATATTTGGCACACAGAGCCAAATATGACGTAATTGCACACAGcatgtgtgttcactgtgtcgTGCACATGGCAGCTAGGCAAACTGCAAACACGAACACACTATGCTCACTACAAACTAATTCATCACAAGATGGATGACATTGAAGGACGGTAATCTTTTTCCTGTAGTCAGAAATCACTAAGAAATTTTAATAGCTCCACCTGCAGTACTGGGGCACTTGAAAAATCGCAGACTATGCGAGCTTGTAAGCAGGCTTTACGCAAACGTCACAGACGCCATCACCAAAATTATGTATGCTGTGGTCTTAAGTGTTGAATAGTGGTCGGAAAGCCAGAGAAAGCTGTTTGATTGGCTGTTCAGCTGAGCAAATTGTTAAAGGGAAAGAAACACCAAATCAAGCAAAGCAAGTCCTGCTTAACATTTTTTATCTGCTCTACCCACTTGTTTGCACCAAAGAAACAAAGCAAGATCATTTAAAGTGGTTtcaaatgatgtgaaaatgatAGCTAGGCTAGTTTGCTTGGTTAAAATTCATACTCCTGCACTAAATACCATAATGTGTCATGACAGTATAGGTACTTATTCTGGTACAAGATAGGTGGAATACCAGGCTTTGTCTTTTTAGCAATTCTGGCTCTTCtggctttatttaaattttgaatttgaatatagACTATTGCCCCCTGCTGGTAAGAAAAGTTATTTTGGCTGTTCAAGTGTGTTTGCTAGTTTTTTGACATTGGCTTGGTATGTCAGGGTCCTAAGTCTGAATGTTTTACAAGGCGTTAGTTATGCCTCCTGCCTACATAATGCATTACAACATTTTGACACTGTGTTGAGTGCACAGTATGTCTGAAATCTTGCACCCGAAGAGATCAGTCTGAATTTTGTTCCCCTCCTACCTCTAGGGGAATTGTTTGAATTGAACCATTGTGTTGCCAGGCTCTGTCCTTGATCTGAAGCTTTCCTGAAGCCTCTTCTGTATATATGGCTGTAAAAGGTGATCCCAAATCAATGTGTACATAGCTAAAGTAATGACAGAAAATACGGAATATTTATCAGTTTAAGTTATGTTtgtacaaaattatatatatacacatatacatactttattttgctcttgGTGCCATTGTGCTCCGCTTTCCTGCTTCTGGTAGGTCAGTAATGTGAAATTTTTTACCTGCTTTAAGGGCAATTTTGGTTTCATGGAAATGTATCCTTGATCATTTAAAATGCTGTGCTGTGGTTTGCGGATGTAAGGAGGTGCTGCAACATTCACGAGTATAATCTCAAACATCATCTCGCGTCATGTTCACATTTATGAAGGCAACAGAACGTTATTAGTGTGTGACAGATTTTTATTTGGGAGAGGATAAGGTCGTTGAGGCTTCTTTTCAATTTTAGACACTTTTCCAGATGACTTACATAattttacacactttcacaAAAGGTTATTAATTCTCTTACATTGTATTTATTTCCttgtttcttaatttttttaaccatttggaGTGGCTTCCATTAAACACCTGATTATGCTGTGTTCAA

Function

symbol description
tanc2 Predicted to be involved in dense core granule cytoskeletal transport; regulation of dendritic spine development; and regulation of dendritic spine morphogenesis. Predicted to act upstream of or within in utero embryonic development. Located in dendritic spine.

NR:

description
protein TANC2-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026946102.2 True 8615 mRNA 0.54 26 2845407 2890143

Neighbor

gene id symbol gene type direction distance location
wnk4b wnk4b,LOC108257086,LOC107683678,LOC107582920 coding upstream 103813 2671258 ~ 2741594 (+)
arhgap27l arhgap27 coding upstream 185129 2607346 ~ 2660278 (+)
LOC117595863 NA coding upstream 277367 2566692 ~ 2568040 (+)
ifnphi3 LOC108256834 coding upstream 288578 2554657 ~ 2556829 (+)
rdm1 rdm1 coding upstream 294334 2541482 ~ 2551073 (+)
hdac5 hdac5 coding downstream 105134 2995277 ~ 3023586 (+)
lsm12a lsm12,LOC108256903,LOC107693683,LOC107562026,LOC107708984 coding downstream 141505 3031648 ~ 3039255 (+)
vwa3a vwa3a coding downstream 151225 3041368 ~ 3067972 (+)
sdr42e2 LOC108256832 coding downstream 181757 3071900 ~ 3091878 (+)
mfsd13al LOC108256898 coding downstream 222098 3112241 ~ 3127730 (+)
G337129 NA non-coding upstream 2532 2842664 ~ 2842875 (+)
G337128 NA non-coding upstream 2952 2841356 ~ 2842455 (+)
G337127 NA non-coding upstream 10851 2834271 ~ 2834556 (+)
G337126 NA non-coding upstream 11348 2833588 ~ 2834059 (+)
G337119 NA non-coding upstream 23877 2821090 ~ 2821530 (+)
LOC113546290 NA non-coding downstream 36381 2926524 ~ 2995271 (+)
G337194 NA non-coding downstream 128967 3019110 ~ 3019410 (+)
G337195 NA non-coding downstream 143701 3033844 ~ 3034394 (+)
G337197 LOC108256899 non-coding downstream 205854 3095997 ~ 3102191 (+)
G337233 NA non-coding downstream 322368 3212511 ~ 3299308 (+)
LOC113546300 LOC108280069,LOC108261210,LOC108257281,LOC108257282,LOC108257284,LOC108257326,LOC108257286,LOC108257289 other upstream 452870 2358116 ~ 2392537 (+)
LOC117595892 LOC108257284,LOC108257282,LOC108257281,LOC108257289,LOC108257310,LOC108272567,LOC108261104,LOC108280065,LOC108272472,LOC108261175,LOC108279530,LOC100526730,LOC108257326,LOC108257286,LOC108261265 other upstream 493658 2185892 ~ 2351749 (+)
LOC113546301 LOC108257282,LOC108257281,LOC108257284,LOC108257326,LOC108257289,LOC108257286,LOC108257310 other upstream 505146 2302145 ~ 2340261 (+)
G336822 ldlrad4 other upstream 899541 1876274 ~ 1945866 (+)
polr2k NA other upstream 1165055 1675040 ~ 1680352 (+)
rsad1 rsad1 other downstream 1417779 4307922 ~ 4325036 (+)
G338163 NA other downstream 1462379 4352522 ~ 4355029 (+)
pbx4 pbx4,LOC107757367,LOC107672472,LOC107670485,LOC103392870,LOC102788435 other downstream 1726181 4616324 ~ 4668256 (+)
brd4 LOC108257120,LOC108429657 other downstream 1808114 4698257 ~ 4752669 (+)
LOC113546199 pet100,LOC107672445,LOC107563330,LOC107587949 other downstream 1867671 4757814 ~ 4762602 (+)

Expression


Co-expression Network