LOC113536346 (tuba4l,LOC108256914,LOC108437766,LOC107669576,LOC107564211)


Basic Information

Item Value
gene id LOC113536346
gene name tuba4l,LOC108256914,LOC108437766,LOC107669576,LOC107564211
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 6773319 ~ 6775535 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034298327.1
AGGTTTAGAGAGGTGTTAATTTTTGTTGGTTTCTGAGGTCTTTATTGTGTCTTGTTACTTTGCAGATTAAAGAAgtgtctttctgtcttgtttTACTTCAACATTGAATAAAATGAGGGAGTGTATTTCGGTGCATATTGGTCAAGCAGGAGTCCAGATGGGTAATTCCTGCTGGGAGTTGTATTGCCTGGAGCATGGCATCCAGCCTGATGGGATGATCACTTCTGGCAGCACCAGCTTGGCTGATTCTTCTTTTGGTACTTTCTTCAGTGAAACTGGAGCTGGAAAATACGTTCCACGAGCTGTTTTCATTGACCTGGAGCCAACAGTTGTGGATGAGATCAGGAATGGACATTATCGTCAACTTTACCACCCAGAGCAGCTAATCAGTGGCAAAGAGGATGCAGCTAACAACTATGCCCGTGGCCACTACACCATTGGCAAGGAGATTGTAGACTCTGTCCTTGATCGCATGCGAAAAATGGCTGACCAGTGTACGGGTCTACAAGGATTCCTGATCTTTCACAGCTTTGGTGGTGGGACTGGATCTGGTTTCACCTCTCTGTTGATGGAGCGCCTATCTGTCGACTATGGCAAAAAATCAAAGCTGGAGTTCTCAGTCTACCCAGCTCCCCAGGTTTCCACTGCAGTGGTAGAGCCCTACAACTCTATCTTAACCACTCATACCACCCTTGAGCACTCGGATTGCTCCTTCATGGTGGACAACGAGGCCATTTTTGACATTTGCAAGCGCAATCTGGACATAGACCGTCCATCCTACAACAACCTGAACAGACTAATTGCACAGATTGTCTCTTCCATCACTGCTTCTTTGCGATTTGATGGTGCTCTCAATGTGGATCTCACAGAGTTCCAGACCAATTTGGTTCCATACCCTCGTATCCATTTCCCACTGGTTACCTACTCCCCTATTATATCTGCTGAGAAAGCCTACCATGAGCAGCTGTCTGTGGCTGAGATCTCTAATGCTTGCTTTGAGCCAGCCAACCAGATGGTGAAATGTGACCCTCGCCGTGGCAAATACATGGCCTGTTGCTTGCTCTATCGTGGTGATGTGGTACCCAAAGATGTTAATGCTGCTATTGCCAGCATCAAGACCCGGCGCTCAATCCAGTTtgtggactggtgtcccacTGGCTTCAAAGTGGGAATCAACTACCAGCCCCCCACTGTAGTACCTGGTGGCGATCTGGCCAAGGTCCAAAGGGCTGTATGCATGCTGAGTAACACTACTGCAATTGCTGAAGCCTGGAGTCGCTTGGATCACAAGTTTGACCTGATGTATGCGAAGCGGGCATTTGTGCACTGGTatgttggtgagggaatggaAGAAGGTGAGTTCTCTGAAGCCAGAGAGGACATGGCTGCCTTGGAAAAGGATTATGAGGAGGTTGGTGCAGATTCTGCTGAAGATGCTGAGGAAGATGCAGATGAGGAGTACTAGAATTGTTCTGTTGTAACGGAGGATTTTTGTacaaaatgttgaataaataaaaattagcatGTA

Function

symbol description
tuba4l Predicted to enable GTP binding activity. Predicted to be a structural constituent of cytoskeleton. Predicted to be involved in microtubule cytoskeleton organization and mitotic cell cycle. Predicted to act upstream of or within microtubule-based process. Predicted to be located in cytoskeleton. Predicted to be active in cytoplasm and microtubule. Orthologous to human TUBAL3 (tubulin alpha like 3).

GO:

id name namespace
GO:0007017 microtubule-based process biological_process
GO:0051258 protein polymerization biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0005874 microtubule cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0005200 structural constituent of cytoskeleton molecular_function

KEGG:

id description
K07374 TUBA; tubulin alpha

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034298327.1 True 1528 mRNA 0.47 4 6773319 6775535

Neighbor

gene id symbol gene type direction distance location
rplp1 rplp1 coding upstream 106966 6664093 ~ 6666353 (+)
clptm1l clptm1l,LOC107655116,LOC107694764 coding upstream 110437 6653221 ~ 6662882 (+)
znrf2a znrf2,LOC105939633,LOC106531196 coding upstream 139126 6621216 ~ 6634193 (+)
LOC113536295 ankrd28,LOC108256911,LOC108441435,LOC107745379,LOC107596646 coding upstream 202061 6528408 ~ 6571258 (+)
snx13 snx13 coding upstream 249193 6477323 ~ 6524126 (+)
cndp2 cndp2,LOC107748690,LOC107696911,LOC107739559,LOC107688323 coding downstream 219778 6995313 ~ 7008911 (+)
tshz1 tshz1,LOC108257250,LOC108429095,LOC107748691,LOC107592027,LOC107696938,LOC107739558,LOC107688322 coding downstream 460565 7236100 ~ 7278140 (+)
galr1a galr1a,galr1,LOC108256854,LOC107697195,LOC107592101,LOC103037936,LOC108429058 coding downstream 699172 7474707 ~ 7477662 (+)
sall3b LOC108256805,LOC107090828 coding downstream 747395 7522930 ~ 7531501 (+)
atp9b atp9b,LOC107656641,LOC107563702,LOC107697002 coding downstream 758505 7534040 ~ 7580421 (+)
G339300 snrpd1 non-coding upstream 121493 6648179 ~ 6651826 (+)
G339290 NA non-coding upstream 127364 6578803 ~ 6645955 (+)
G339279 NA non-coding upstream 246225 6526395 ~ 6527094 (+)
LOC117595844 NA non-coding upstream 275576 6494601 ~ 6497743 (+)
LOC117595843 NA non-coding upstream 279073 6493637 ~ 6494246 (+)
G339616 NA non-coding downstream 175037 6950572 ~ 6951822 (+)
G339618 LOC108429093 non-coding downstream 177527 6953062 ~ 6959284 (+)
G339659 NA non-coding downstream 457349 7232884 ~ 7233107 (+)
G339661 NA non-coding downstream 472285 7247820 ~ 7250415 (+)
G339700 NA non-coding downstream 619539 7395074 ~ 7399070 (+)
G339324 NA other upstream 56173 6711015 ~ 6717146 (+)
mturn mturn,LOC107559763,LOC107572558 other upstream 157296 6604605 ~ 6616023 (+)
LOC113535938 tmem196,LOC106588729,LOC107667578,LOC107568813,LOC107755951,LOC107571147,LOC107655099 other upstream 429410 6333989 ~ 6343909 (+)
stxbp2 stxbp2,LOC107670524,LOC107587946,LOC107711254,LOC107757364 other upstream 1992933 4761313 ~ 4780386 (+)
LOC113546199 pet100,LOC107672445,LOC107563330,LOC107587949 other upstream 2010717 4757814 ~ 4762602 (+)
LOC113536074 LOC108257189,LOC108257413 other downstream 1465162 8240697 ~ 8271499 (+)
G340208 LOC108256789 other downstream 1507425 8282960 ~ 8285204 (+)
sem1 NA other downstream 2137393 8912928 ~ 8915846 (+)
sgce sgce,LOC107722147,LOC107669779,LOC107665667,LOC107731676 other downstream 2343479 9119014 ~ 9134179 (+)
bet1 bet1,LOC107669829,LOC107722155 other downstream 2449069 9224604 ~ 9229638 (+)

Expression


Co-expression Network