si:ch211-165g14.1


Basic Information

Item Value
gene id si:ch211-165g14.1
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 3128704 ~ 3137973 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034298349.1
tATAGAATGAATAAATCCTGCACTGCTGTCAGCGCTGCTGtttttataggaaattaatcaacaccttctgaccaatcacaatccagaattcagcagctcgGCGGCAATCACTGCAGTGACGtagtgacttttattttgaaatgaaggCCGTTAAAACGTTCCTGTCGGCCATCTTAAAACTGTTAGCGCTCTGAGTCACAGTGTTCAgctaattgtttaaataatataaaaaatctatatactatatatgtcatttatatttatttatataattcagTTTTATCGTATGATTTTACacaagaatattttttattcaccaCTTTGTGCCTTTAGTGTTGTTCCTGAGCTCGGTGAATTGGACATATTTCTCCGttaTGGATCCTCTGAGCTGGCTGAACGTCATGCAGCTTCAGGATCCGCTTCCCAAACCTCTGGATCTCACCAAGCAGATCTCCGAGGCTCTGGATCTGGTGAAGAAGAAGCCGAGCCGGAGCGACCGCGCCTCAGGGACCGACAGTATCCGTTCTCCTCGCTCGGAGTCCACGCTGCCAAACGGACTCGTCCACGAACCTGCGGAGACGCCGATAACCGCTTCGGGGAACAAGTGGCGCAGGACgggagaggaaagaagagaaaggaacGGCGCAGGACTTCAGGACACTCCTTCATCACAACAGCGTTCCCGGTTCCCGTTACCTCCCGTCGAAACCTTGGCGTCGGAGTGTTCCGGATCCGGACACGCGGACTGCGTTTCCAGCGACGACAGCGGCGCGATCGAGGTGCCTTTCAGCGTTCCGATTAGCAACGGCACCTCGCTGATACGGAGAGATACAGAAAACGAGAAAcggaaaaaagaaagcatggGAAATTCCTCTCCGAGCCTGACGGAATGGGATGCGCTCCAGGATAGCGACTCGGTGGAATCCAGAAACGTACCGTCCACCTCAGAAGCAGAAAACGCCGACTTCTGTAAAGCAGCACAGAACGGATCcggatcatcatcatcatcatcatcgtcgtcgtcatcatcatcgtcgtcgtcgTCGAGCCAGAAGATGGCGCCAGCGACTAAGAAAACCAGAAACCAGCAGCGCTCGAGGTCTTCAGCAGGCAAGAAAGCAACAGCGAGCGCGgcgaagaggaggaagaagaagaagcagcagcgCTCCGGTTTATCGTCGCCGCCGTCCGCGTTTCCTTCCCACGAACCCGAGATCAAGCTGAAGTACGCGAGCTGCAAGGAGGAGAAGCGAGAAGGCAGAGGGAACACCTTCGCCCCGTACGTCCGTATGGAGTTCTCCGCCTGCACCGTCGTCAACTCCGAGGAAGACGGCGAGTTGAAGGCGAGGAAGCAGCGACAGGCCGCGGCGTCGCCCGGGATCGTTCCCACCACGTCGTGTTTACAGCTGGGACGCCTCGGGTCAGAGGGCAGGCGTCAGAGCGGCGAGCTGTGCTGCCTGTGCGGACGGACCGCCAACGCCGCGGGTTTGGGGGACCTGCACGGACCGTACCGTCCCTGCGGACCTGACGGGAAGACGTCCGCGGATCTGCTGACGAACGGACACGAGGACGCCGGCGCGAAGAGGAAGTGGACGTCGGACGAGGTCGGAGAACGCTGGGTTCACGAGGACTGCGGTATCTGGTCAGCGGGCGTTTTCCTCGTTAAAGGAAGGCTGTACGGACTGGACGAGGCGGTCAGGCTCGCGCAACAAGCCGTTTGCTCGTGTTGCCACAGATGTGGTGCCACGCTGGGATGCTTCTTCAAGGGCTGCCCCAGTAAATACCACTTCCCCTGCGCTCTCCAGGCTGaatgtgtgtttaatgaggAAAACTTTACTCTGAGATGTCCAAAGcacaagAATAAATCGGGACTCGGCGCGAGCAGACTGCAGAACAGGTGAACTCCAGCGTGATTTTCATGGTTCGGAGTGAGAGTTtacatcagggtttttttttcttcttcttctcttctacATAAACTACTGAAGTGTTTACATTTTCCTCACCTGCAGAGGAACGTCTCTGAAACCGAACTGCCTTCTCCTTCACTGCCGctgccttttttaaataaataaataaatacccgGTTGTTTTGAGAGCgctgaaggatcatcacactgTTCCACCGAGCGGATTTTATTCAGCCACGCCTCATTCCTTTATCGTATTTCAGAGCCTGATGTTCCTTCAACTTGttttttataatgtgttttttaattttttattgttttgttttttccatcaAAAGGGTGTTCacgttttttctttcttttttttttttttttttttgactttatACTTGACAAAAACAGGTGctggatttctttttaaaatgtgatctATACagatttttatgatttaaatgttACTGGTAATCGTTTGGACTGTTAAGATTTTTACTCTCGAGATTTTCCGGTcctttgctctgtgtgtgacGCCAGTCGGTGATGCCGGACGTGTCGAGTCTTTTCGCATGGTACCGTATGCACTATATGTGAAcatatttatggtttatttatGTCTGATTCATGCGTATGTGTATTTATTCACAGATGAACAACCTCAGCTGAAAAGACTTTCTGGCACTTTAGAAATGCagggatttttattattattattattattattattattattattattattattattcaggtgATCAGACATGAcgtctgtgtgtctgttgcaCATTTTGTCCAGGAGACAAACTTTAAGGCCTGAGATTGGCAGAAAATGTGTGTAGGATTTCACCCTATGCCTTTTTTTTATGTCTAAGttctaataaatatttttaaactctg

Function

NR:

description
PREDICTED: uncharacterized protein LOC107726816

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034298349.1 True 2801 mRNA 0.48 6 3128704 3137973

Neighbor

gene id symbol gene type direction distance location
mfsd13al LOC108256898 coding upstream 974 3112241 ~ 3127730 (+)
sdr42e2 LOC108256832 coding upstream 36826 3071900 ~ 3091878 (+)
vwa3a vwa3a coding upstream 60732 3041368 ~ 3067972 (+)
lsm12a lsm12,LOC108256903,LOC107693683,LOC107562026,LOC107708984 coding upstream 89449 3031648 ~ 3039255 (+)
hdac5 hdac5 coding upstream 105118 2995277 ~ 3023586 (+)
znf750 znf750 coding downstream 130965 3268938 ~ 3272927 (+)
LOC113546219 LOC108256900 coding downstream 159937 3297910 ~ 3305283 (+)
adgrl1a adgrl1,LOC107599314,LOC107711219 coding downstream 286332 3424305 ~ 3635392 (+)
tnfsf18 NA coding downstream 585216 3723189 ~ 3732164 (+)
qtrt1 qtrt1,LOC107744982,LOC107661875 coding downstream 673653 3811626 ~ 3821302 (+)
G337197 LOC108256899 non-coding upstream 26513 3095997 ~ 3102191 (+)
G337195 NA non-coding upstream 94310 3033844 ~ 3034394 (+)
G337194 NA non-coding upstream 109294 3019110 ~ 3019410 (+)
LOC113546290 NA non-coding upstream 133433 2926524 ~ 2995271 (+)
G337138 NA non-coding upstream 257795 2870683 ~ 2870909 (+)
G337233 NA non-coding downstream 74538 3212511 ~ 3299308 (+)
G337304 NA non-coding downstream 351880 3489853 ~ 3491029 (+)
G337273 NA non-coding downstream 572729 3710702 ~ 3712919 (+)
G337374 NA non-coding downstream 605164 3743137 ~ 3745935 (+)
G337363 NA non-coding downstream 621683 3759656 ~ 3762176 (+)
LOC113546300 LOC108280069,LOC108261210,LOC108257281,LOC108257282,LOC108257284,LOC108257326,LOC108257286,LOC108257289 other upstream 736167 2358116 ~ 2392537 (+)
LOC117595892 LOC108257284,LOC108257282,LOC108257281,LOC108257289,LOC108257310,LOC108272567,LOC108261104,LOC108280065,LOC108272472,LOC108261175,LOC108279530,LOC100526730,LOC108257326,LOC108257286,LOC108261265 other upstream 776955 2185892 ~ 2351749 (+)
LOC113546301 LOC108257282,LOC108257281,LOC108257284,LOC108257326,LOC108257289,LOC108257286,LOC108257310 other upstream 788443 2302145 ~ 2340261 (+)
G336822 ldlrad4 other upstream 1182838 1876274 ~ 1945866 (+)
polr2k NA other upstream 1448352 1675040 ~ 1680352 (+)
rsad1 rsad1 other downstream 1169949 4307922 ~ 4325036 (+)
G338163 NA other downstream 1214549 4352522 ~ 4355029 (+)
pbx4 pbx4,LOC107757367,LOC107672472,LOC107670485,LOC103392870,LOC102788435 other downstream 1478351 4616324 ~ 4668256 (+)
brd4 LOC108257120,LOC108429657 other downstream 1560284 4698257 ~ 4752669 (+)
LOC113546199 pet100,LOC107672445,LOC107563330,LOC107587949 other downstream 1619841 4757814 ~ 4762602 (+)

Expression


Co-expression Network