rims2b (LOC108257276)


Basic Information

Item Value
gene id rims2b
gene name LOC108257276
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 2074883 ~ 2143022 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034298463.1
CATTCCGCTTCATTCTAttccatttcctcttttttcatccatttttccCGCATTTCAGAAATCTGTGAAAATATGATCACcctggaggagaggagaggagagagaagagagaggagagcagCGCGGTGCAGGTTataagggaaagaaaaaaggagggaagaaggaaggaaaaaaagggaggaggacgcaaaaaataaataataaaggaaaTCAAAAAGGCCTCGGGatttctatattttctatatttggATTTTTATGGCTGGTGGTGAGGCGGGGGTCTgcacagcacagcagcacaAATGGGTTAGACTGGGATTAGTCATGATgtggagctaaaaaaaaaagatgtcAGCTCCGGAGATGCCGGACCTGAGCCACCTGAccgaggaggagaggaagatcATCCTCTCGGTCATGGATCGGcagaggaaagaagaagagaaggagcAGTCCATGTTgaaGGAGTCTCTCAACAAAGGGCCAATGTCCCAGCTTACTCAGAGGCTGCATCAGCAGTTTGAGATGTATAAGGATCAGGTGAAGAAGCTCGGTGAAGAGTCTCAGAAGAATCAGGAGCAGAAGAGCGACTCTCCAACCTGCGGAATTTGCCACAAAACCAAATTTGCCGACGGCTGCGGCCACGTGTGTTCTTATTGCCAAACCAAGTTCTGCGCTCGCTGCGGGGGCCGAGTGTCTCTGCGCTCCAACAAGGTAATGTGGGTGTGCAACTTGTGCCGAAAACAACAAGAAATCCTCACCAAGTCAGGCGCCTGGTTCTATGGAGGTGCTGAGGGCCGAAGGTTAGGACccgaggtcaaaggtcatctAGACCCATCTGGATTAGCTGTGAAAAGTGCTTCAGGTGTTCCAGTGGATAGAAGAAGAAGCCCATCGGCATCCAGGACGCACAAAGGGGACGTCGTAGGACGATTTCAGCATGGGGACGGCGTCATACCTCGCTCTCCGTCTGACTCGAACCGCTGGCGTTACCAGGACCGCCACTTGGACGTTCAAATAGACGATCGTGAGCTCCAACGGCAGCGCGAGGAGGAATATCGCTCTCGGTACCGCAGTGACCCCAACCTTGCGCGGTACCCTGTTAAACCGCAGCCTTACGAGGAGCAGATGCGAATCCACGCTCAGGTTTCTAGAGCACGGCACGAGAGGCGCCACAGCGACGTTTCCTTGGCTTTCACCGAGCTCGACGAGGCTCACAACGGTTTTGACGGACGACGCCCCGCATCAAAGCGCTCGTATTCGATGGACAGAAGCTCGCCGGCTCTCAGGACATTCAGTAAAACGCACCATCTGGACCCGGGCATGATGGATGGTGTGATGAGGACCGACTCGCTCAGCTCAGATCAGTCAGAATCGATGAGGCCTGCGAGGAGTCGGAGAACAGGACGGTTCATGGCGGCGGGGAGCTTCAGCAGCTCGGAGGAGGAGATCAACACCACGCCGGAGTACACGAGCTGTGAGGACGTGGAGCTCGAGTGTGAATCCTTTGGTGAGAAAGGAGATATGGACGGCCACTGGTGGGATTATGCGTCTTGGCATAACGAGTCCTCGTCAATGTCTATGCACCCGGTGACATGGCAGCCGTCCAAAGATGGAGATCGGTTAATCGGGCGGATTTTACTGAACAAGCGGATGAAGGATGGCACGGTGCCCCGAGACACGGGCGCTCTGCTCGGCCTGAAGGTGGTTGGAGGTAAAATGACTGAATCTGGTCAGCTTTGTGCTTTTATTACCAAAGTGAAAAGAGGAAGCTTAGCGGATACAGTCGGCCATCTCCGaccaggtGATCAGGTTCTCGAGTGGAACGGCAGAGTTCTTCAGGGAGCCACGTTTAAGGAAGTTTATAATATTATTCTAGAGTCCAAACCTGAGCCGCAGGTTGAGCTCCTGGTCTCGCGGCCCATCGGTGACGTACCCAGAATTTCAGAAAGCACACATGGACAGCTTGAATCCAGTTCAAGTTCATTTGAATCGCAGAAGATGGGTCCATCCATTTCCGTCACATCTCCCATGAGTCCCGGCGTCCTTCGTGATGCTCCACAGTATCTGTCTGGACAACTTTCAAGTCCATGCCTTAATAGAAGAACCACGCCTTTTGTCCCTAGGGTCCAGGTTAAGCTTTGGTACGACAAAGTGGGACACCAACTCATCGTCACCATTTTGGGCGCCAAAGACCTGCCTGCTCGAGAGGATGGCCGTCCCAGGAACCCCTACGTCAAAATTTACTTCCTTCCTGACAGAAGTGATAAAAGCAAAAGAAGAACGAAAACAGTGAAGAAGTCACTAGAACCTAAGTGGAACCAGACGTTCATGTACTCGCCCGTGCACAGGCGTGAGTTCAGGGAGCGAATGCTGGAGATCACACTGTGGGACCAGGCACGGGTTCGAGAGGAGGAGAGCGAGTTCCTTGGAGAAattttaATAGAGCTGGAGACGGCCCTGCTGGATGATCAGCCTCATTGGTACAAACTCCAGACGCATGACGTTTCCTCCATGCCACTGCCGAACCCTTCACCGTACATGCAGAGACGCTTCATACAGGGAGAAAGTCCGACACGGAGACTACAGAATAAAGGCTCATATTATCACGGCCCAGGATCACAGCGAATCAGTGACAGCGAGTTTTCCGACTACGACTGCGAGGACGGAATTGGCGTCATACCAGATTACCGACACAATGGCAGAGAGTTCCAGAGCTCCACTCTGTCCGTTCCTGAGCAGGTCATGTCGTCCAATCATCGCTCTCGATCGGATGTGATGCGCAATCGCTCTCGTTCTCCCAGCGTTCCTCCTCCTCACAGTCGGAGTTTAGATCACGGCGTGAGAGGACCGGTGCATTATGGGCCTCGACATCGACTCTCGGAAGACCGATATTCTCCTGATAGAAACTCAGTCACTCACCCTCATCGAGTCCGAACCAGATATCACACCATCGATACGCCTTTCCAGGACCACAGTCCCATGTACCCTATCTATCGTGAAGACGCACTGAAGCTGTTACGCTCAGCTAAGACGACCCGAAGCTACTCGGACAGGGCTTATGGTAGTTTGGAGAGGAGGATGAGGCGGGATAGGCGAATGTCAGTCTACAGTGACTCGTATGAATCACCtgagagACATTACAATGGTCCCAATCATGTTCCCTCACCGTGGCCTAATCACGTCCCGAATGGATCCTCTGATGATTACAGGAACTGCCCCAAGATAGAAATCGAGCCTTCCACAGATGCAGAAAGAGAGGATCATATACCAGAGTTTCCAGTTAGCCACGAACCATTTGAGGAGGATTTGAGGTACGCTCGTGCCACAGTGGACAGACATTACAGGTCGAGGTCAGCTGACCAGCGCCCCATGATGGAGAGACAGTTCTACACTCGCTCGCGCTCGTCCGAGCGTCCTGAACCGTCCTACATGAGGTCCATGCCGTCTTTACCCTCCAGGAGATCTGCCCCTCCCTCTCCTGCCTTAACGAGGGCGAATCCTCGGGCCGGATCGGTCCAAACGAGTCCCTCAGGCACACCAGCGTCGGCTCGAAGAGGTCGGCAGTTACCGCAGGTCCCTCCGAAGGGCTCCATCGACAGAAATGGTGGAGAGGGCGTGGCAGAGCCTTACGaagCCTCTGTTAATGAAGTTGTAGCGGTATCTGTGACTCCGCCCCTTGAGCAGTCCCCTGCCCCGCCCCCaataacacaaacaacacctgGTAAAACTTTACAGAAAATCTCAGAGTAGATGATCTGTTGAATGTGTTTGTTGTTATGTTTTGAACATTTGATCCACAGCACACTAGTACAGTTTAGGGTCATAGGTCATGCTAATCGCTAATGCTTAGCATGGGTTAGTGTGTTGAGCTTTTGTTTTATAGACTAATAGAAAGCGCCCCCTAGAGCACACATTAGACCATTACATAGTGACTAAATGATATTAGTCTATAGagtttcattttgttatttctctctcattgtctctcaGTCCTGTCACTTTCACACATCTAACTGCACAATCTCTttcctttctgctttttcatCCTTTATCTGCATCCTGTGTTCTCGTTAATGTGTGAAGTGCCTTCGTCCTTCACACACACCGCAGCTGGTAATGATGATTAGCAGCAGTTAGACATGTTTCCATGATTTTACAAAATAACAGTCCTGTAGTGTTCCCTCAGTCCCCAGTTAGTGCGCTGGAAACACTCCATGTTAGTGTGTGTCGTGAGATATGACATTTTAGAGTTATAGATTTCTGATATTGGGTCAGAAATTGATATTCCTTATAAACTGGCAAATCAGTAGAACTTTTTACTAGATAGATTTttaccagaaaaaaataaagatttttaacatttttatgatgTTATTGAGCCAGAAAAAGCTTACTGTAATCTTCATTGAGTGAATCAGTAAATATTACACGTGAGTTCATACACACTCAGCTAGCGACTAATAAACCTGGTGTAACTCAGAGTAATGTATTTAGTGCTATATagtacattatattacatttattaatattttatacattgtgtgTATCATAGAGACGGTCAGCATGGTCTGCTTTTTACAAGAAATTACcaagaaatgaaaaagttaGCAGAAAGGCGACTGGACCAATTAGATTtgagcaaaaatatatattttttagaaatattacTACATGATATTACTACATACAATAAGTTGTGGCAAGTAGATTGATCATGTagattttacaaaacaaaaatccaaaagCAGGCAGAAATGTTtggttccaagtagaacaaataaattttacaaaaccaaactaaatgaaataattactgTACCAAATCAAATTGATTCACCAAATAGATTTTACCAAGTAATAAAACTTCACCAGAAACCTTACTGTACCAAGTAAATTTATCGTGTATCATTTTTGCCATGAAATAAAAAGTTAACAGAAAAGTATTATACCGTGGAGATTTACCAAGtacatttttaccatttttcatttttttaaaattcactgtAAAGGTGTaccatgttataaaaaaaagtaatcagaAAAGTTACGATTTTACAAAAAAGTTACTGAAAGAATTATTCTATCAACTAGATTTAACCCAAAATTTTGCAAAAGTTACCAGAAAAGTTACTGTACCAAGTAgattttacaaacaaacaaacaaacaaagtaaataaagtacCAAGTAaattttagaaaaacaaaagtgtttttttataaaatcttcATGTTATGATGAGAAAATTCCATTATCATCCATCCCACTGTCATTTTTGCTTTATTGTggtttttattctgattttttttcaatatgcCTCCGTCATTTTCGTCACCAAAGCTCCAGTGTGGGTGGAGCCTCTGGCTCCATTGGGGGCGGAGCCTCCAGCCCCAGCGCCTCCCCCTGCACCAGACCCCGTCTCCGAACCAGACCCCGCCCCTTCATTGCCTCTTGAACCTgtcatttcacattcatttgGATCAGCTCCGCCTCCAGCTCCGCCTCCACCTCCGCCTCCCCCAGTGCCAGGTGTGTCAGTAGTGTGTGATTTCCATCCACTCGCTTATTTCCAGCAGTTTTTTGAAGACGGCTGAAAATGGAACctttaaacaggaaatgagatAAAGGGTGATGGAAACAGATGCATAAACAGTTTGGAGCTCATGGAGGCGTACACTGATGTTTATCTGACTGTTTGGTACCGAAGTAGcccacacaagtgtgtgtgtgtgtgtgtgtttggcagttACTCTTTTGATGATGTCGTCTCCTCTTTAGATTAGCTGATCATCTAAAAGATGTTGTC

Function

NR:

description
PREDICTED: regulating synaptic membrane exocytosis protein 2-like

GO: NA

KEGG:

id description
K15297 RIMS2, RIM2; regulating synaptic membrane exocytosis protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034298463.1 True 5804 mRNA 0.47 30 2074883 2143022

Neighbor

gene id symbol gene type direction distance location
cthrc1a cthrc1a,cthrc1,LOC108257304,LOC108438867,LOC107746934,LOC107675657,LOC107668704,LOC107754923 coding upstream 8973 2059332 ~ 2065910 (+)
mc5ra mc5ra,LOC108257298,LOC108438868,LOC103022384,LOC107746932,LOC107552309 coding upstream 35836 2026407 ~ 2039047 (+)
rnmt rnmt,LOC107746930 coding upstream 71549 1991814 ~ 2003334 (+)
seh1l seh1l,LOC107668717,LOC107746927 coding upstream 142183 1920935 ~ 1932700 (+)
psmg2 psmg2 coding upstream 183184 1883445 ~ 1891699 (+)
LOC113546187 LOC108257276,LOC108412938,LOC107668707,LOC107689551,LOC107559391 coding downstream 13533 2156555 ~ 2163523 (+)
LOC113546299 LOC108257284,LOC108257282,LOC108257326,LOC108257286,LOC108257289 coding downstream 66770 2209792 ~ 2240423 (+)
LOC117595862 rdm1 coding downstream 305194 2448216 ~ 2453296 (+)
rdm1 rdm1 coding downstream 398460 2541482 ~ 2551073 (+)
ifnphi3 LOC108256834 coding downstream 411635 2554657 ~ 2556829 (+)
G336849 fam210a,LOC107675659,LOC107754921,LOC107566562,LOC107668710 non-coding upstream 90387 1965976 ~ 1984496 (+)
G336482 NA non-coding upstream 231913 1842589 ~ 1842970 (+)
G336481 NA non-coding upstream 232347 1821132 ~ 1842536 (+)
G336261 NA non-coding upstream 317479 1756185 ~ 1757404 (+)
G336256 pabpc1,LOC107672855 non-coding upstream 333876 1738163 ~ 1741007 (+)
LOC117595895 NA non-coding downstream 58758 2201780 ~ 2203741 (+)
LOC117595896 NA non-coding downstream 99163 2242185 ~ 2259536 (+)
G336991 NA non-coding downstream 100471 2243493 ~ 2244230 (+)
G337052 NA non-coding downstream 254081 2397103 ~ 2397302 (+)
G337059 rdm1 non-coding downstream 307497 2450519 ~ 2551280 (+)
G336822 ldlrad4 other upstream 129017 1876274 ~ 1945866 (+)
polr2k NA other upstream 394531 1675040 ~ 1680352 (+)
G336433 parp10 other upstream 415424 1657317 ~ 1659459 (+)
G336334 NA other upstream 739309 1269809 ~ 1335574 (+)
LOC117595892 LOC108257284,LOC108257282,LOC108257281,LOC108257289,LOC108257310,LOC108272567,LOC108261104,LOC108280065,LOC108272472,LOC108261175,LOC108279530,LOC100526730,LOC108257326,LOC108257286,LOC108261265 other downstream 42870 2185892 ~ 2351749 (+)
LOC113546301 LOC108257282,LOC108257281,LOC108257284,LOC108257326,LOC108257289,LOC108257286,LOC108257310 other downstream 159123 2302145 ~ 2340261 (+)
LOC113546300 LOC108280069,LOC108261210,LOC108257281,LOC108257282,LOC108257284,LOC108257326,LOC108257286,LOC108257289 other downstream 215094 2358116 ~ 2392537 (+)
rsad1 rsad1 other downstream 2164900 4307922 ~ 4325036 (+)
G338163 NA other downstream 2209500 4352522 ~ 4355029 (+)

Expression


Co-expression Network