psmg2 (psmg2)


Basic Information

Item Value
gene id psmg2
gene name psmg2
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 1883445 ~ 1891699 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034298501.1
GGTAAGGGGCCTTTCTGTGACTTCTGTGAGAATCAGTGATTCCGGGTTCAAATGTGAAACTAAAACACACCGGTTATAAATCATTCAGCTTTTCTGCCCTCggttttttatttaacagtgaaTAAAGAGATAAATAGCCATGTTTGTGTCGGCGGAAGCGCGAGCTCCGTGTTTTAAAGGCTTTACTTTAATCACGCCCGCGGTGTCGGTGGGGAACGTGGGACAGCTGGCCGCGGATCTGATCATCTCCACACTGGACATGGTGAGAGCCGGACACTTCCACACGGACTGTCTGATCCCAATGGCGGGAAATAATCCGTACAGCAGCGGCGAGGAGGACGCGGCTCTGCTCAGCACTAACGCTGAAGTTTACTGCCGCAGTGACTTGCAGTTGGCCGTGCTGCAGATACGGACGCCCATCTTACCGACGAAGATGAAATCTTTCCGTAAGACGCTGGTGTCCTGGATTAAGACTAGCGGATTTTCCAGGACGGTGCTGCTGTCCAGCTGTCACGCCCACCACCGAGATGACCAGCAGCTCCTCAGCAGCTCTCCTCTGAGATACCTGCTCACTCCAGCTCTGCGGGGGGACACGGAGGGGACGGAGGGGACGCTGCAAAGCTTGGGatggagggagatggagagagtgagcgCTTTCCCTGGAGTTACTGATTCAGACAGACAGCGTCTCTACATCCCGGGAGGAGGCATCACTAAAGCACTCTACAACGACTGCTGCAGTGAGAACATGTCCATGgcagtgctgctgctgttctgCTCTGAGGGAGACAACATCCCTGACGCCTTCACTCTCGTCAATCACCTAAACGACTGGCTCCACCTGCTGGACAAACCGGTTCAGGGCTCTGTTCCGTGGAGAAGCCCGTCCTCCTGGAGGCTGCTGTTCGGAAGCGGTGTTCCTCCCATGATCTTCTGAACTCCACGAGACACAGGAGACGACGACGGGACGTGTTTCTGAAACGTCAATGGAGTCTggactgggtgtgtgtgtgttgtgtgtgtgtgtgtgtgtgttgcttatcacacaaacacacacacatacactgcgaTATTCACAATATTCAAAACACCACTATCCCTTCATTTCATTCAGGAAGCTGTCAGAAAGAACCTGATTATTCTTTATCATCACACGTATCCCATAACTCAGTTCAGGGGAAGTGTCGTGATTTTAATATAACGTCATTAAATACAACCATGTCTGTAAACCTTTGCCAAATTCTGTTGtctttataatgtttattactGGAAAATGTCTGATTCTCATTAAACAGAATGACTTTTCTGAAA
>XM_034298502.1
TAAGGGGCCTTTCTGTGACTTCTGTGAGAATCAGTGATTCCGGGTTCAAATGTGAAACTAAAACACACCGGTTATAAATCATTCAGCTTTTCTGCCCTCggttttttatttaacagtgaaTAAAGAGATAAATAGCCATGTTTGTGTCGGCGGAAGCGCGAGCTCCGTGTTTTAAAGGCTTTACTTTAATCACGCCCGCGGTGTCGGTGGGGAACGTGGGACAGCTGGCCGCGGATCTGATCATCTCCACACTGGACATGGTGAGAGCCGGACACTTCCACACGGACTGTCTGATCCCAATGGCGGGAAATAATCCGTACAGCAGCGGCGAGGAGGACGCGGCTCTGCTCAGCACTAACGCTGAAGTTTACTGCCGCAGTGACTTGCAGTTGGCCGTGCTGCAGATACGGACGCCCATCTTACCGACGAAGATGAAATCTTTCCGTAAGACGCTGGTGTCCTGGATTAAGACTAGCGGATTTTCCAGGACGGTGCTGCTGTCCAGCTGTCACGCCCACCACCGAGATGACCAGCAGCTCCTCAGCTCTCCTCTGAGATACCTGCTCACTCCAGCTCTGCGGGGGGACACGGAGGGGACGGAGGGGACGCTGCAAAGCTTGGGatggagggagatggagagagtgagcgCTTTCCCTGGAGTTACTGATTCAGACAGACAGCGTCTCTACATCCCGGGAGGAGGCATCACTAAAGCACTCTACAACGACTGCTGCAGTGAGAACATGTCCATGgcagtgctgctgctgttctgCTCTGAGGGAGACAACATCCCTGACGCCTTCACTCTCGTCAATCACCTAAACGACTGGCTCCACCTGCTGGACAAACCGGTTCAGGGCTCTGTTCCGTGGAGAAGCCCGTCCTCCTGGAGGCTGCTGTTCGGAAGCGGTGTTCCTCCCATGATCTTCTGAACTCCACGAGACACAGGAGACGACGACGGGACGTGTTTCTGAAACGTCAATGGAGTCTggactgggtgtgtgtgtgttgtgtgtgtgtgtgtgtgtgttgcttatcacacaaacacacacacatacactgcgaTATTCACAATATTCAAAACACCACTATCCCTTCATTTCATTCAGGAAGCTGTCAGAAAGAACCTGATTATTCTTTATCATCACACGTATCCCATAACTCAGTTCAGGGGAAGTGTCGTGATTTTAATATAACGTCATTAAATACAACCATGTCTGTAAACCTTTGCCAAATTCTGTTGtctttataatgtttattactGGAAAATGTCTGATTCTCATTAAACAGAATGACTTTTCTGAAA

Function

symbol description
psmg2 Predicted to be involved in chaperone-mediated protein complex assembly and proteasome assembly. Predicted to be active in cytosol and nucleus. Orthologous to human PSMG2 (proteasome assembly chaperone 2).

NR:

description
proteasome assembly chaperone 2 isoform X1

GO:

id name namespace
GO:0043248 proteasome assembly biological_process
GO:0005634 nucleus cellular_component
GO:0000502 proteasome complex cellular_component

KEGG:

id description
K11876 PSMG2, PAC2; proteasome assembly chaperone 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034298501.1 True 1311 mRNA 0.50 7 1883445 1891699
XM_034298502.1 False 1306 mRNA 0.50 7 1883447 1891699

Neighbor

gene id symbol gene type direction distance location
grhl2b grhl2,grhl2b,LOC107748368,LOC107672862,LOC107550099,LOC107552317,LOC107738316,LOC107698657 coding upstream 41397 1804670 ~ 1842048 (+)
spag1a spag1,spag1a,LOC108438857,LOC107748364 coding upstream 181714 1683334 ~ 1701731 (+)
adck5 adck5 coding upstream 253449 1610614 ~ 1629996 (+)
lix1l lix1l,LOC107693252 coding upstream 274591 1596847 ~ 1608854 (+)
prcc prcc coding upstream 296983 1578998 ~ 1586462 (+)
seh1l seh1l,LOC107668717,LOC107746927 coding downstream 29236 1920935 ~ 1932700 (+)
rnmt rnmt,LOC107746930 coding downstream 100115 1991814 ~ 2003334 (+)
mc5ra mc5ra,LOC108257298,LOC108438868,LOC103022384,LOC107746932,LOC107552309 coding downstream 134708 2026407 ~ 2039047 (+)
cthrc1a cthrc1a,cthrc1,LOC108257304,LOC108438867,LOC107746934,LOC107675657,LOC107668704,LOC107754923 coding downstream 167633 2059332 ~ 2065910 (+)
rims2b LOC108257276 coding downstream 183184 2074883 ~ 2143022 (+)
G336482 NA non-coding upstream 40475 1842589 ~ 1842970 (+)
G336481 NA non-coding upstream 40909 1821132 ~ 1842536 (+)
G336261 NA non-coding upstream 126041 1756185 ~ 1757404 (+)
G336256 pabpc1,LOC107672855 non-coding upstream 142438 1738163 ~ 1741007 (+)
G336275 NA non-coding upstream 295151 1586247 ~ 1588294 (+)
G336849 fam210a,LOC107675659,LOC107754921,LOC107566562,LOC107668710 non-coding downstream 74277 1965976 ~ 1984496 (+)
LOC117595895 NA non-coding downstream 310081 2201780 ~ 2203741 (+)
LOC117595896 NA non-coding downstream 350486 2242185 ~ 2259536 (+)
G336991 NA non-coding downstream 351794 2243493 ~ 2244230 (+)
G337052 NA non-coding downstream 505404 2397103 ~ 2397302 (+)
polr2k NA other upstream 203093 1675040 ~ 1680352 (+)
G336433 parp10 other upstream 223986 1657317 ~ 1659459 (+)
G336334 NA other upstream 547871 1269809 ~ 1335574 (+)
G336350 cdk12 other upstream 555938 1325816 ~ 1327507 (+)
mllt11 mllt11 other upstream 747321 1132955 ~ 1136124 (+)
LOC117595892 LOC108257284,LOC108257282,LOC108257281,LOC108257289,LOC108257310,LOC108272567,LOC108261104,LOC108280065,LOC108272472,LOC108261175,LOC108279530,LOC100526730,LOC108257326,LOC108257286,LOC108261265 other downstream 294193 2185892 ~ 2351749 (+)
LOC113546301 LOC108257282,LOC108257281,LOC108257284,LOC108257326,LOC108257289,LOC108257286,LOC108257310 other downstream 410446 2302145 ~ 2340261 (+)
LOC113546300 LOC108280069,LOC108261210,LOC108257281,LOC108257282,LOC108257284,LOC108257326,LOC108257286,LOC108257289 other downstream 466417 2358116 ~ 2392537 (+)
rsad1 rsad1 other downstream 2416223 4307922 ~ 4325036 (+)
G338163 NA other downstream 2460823 4352522 ~ 4355029 (+)

Expression


Co-expression Network