LOC113529000


Basic Information

Item Value
gene id LOC113529000
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 910572 ~ 950118 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034298503.1
tgtgtgtgtgtatagggagGGTCAGTTAGGTGTGGTCTTTTAGAAGTTACTGTAACTTTCACTTTACTTGGTCAGTTCACACTCTGGAGATTTTCCTCGTGCTTTGAGATGGccgtgtgtgttttctcttcgTTACTCACCGTACTGTGTGTGGGACTGTATGGAAAATATACATACGCAGAAGCATGTACAGATCCTGTTGTCACTCCGGCGTCTCTGCTGGTGGAGTATGGAGACCCTGCTGAAGTGAACTGCTCCATACCGAGCAAACCTGAGACAGATTACACGCTGGGCTGGGAGTCTAAAACATCACAGCCAGCTACAGACACTGAGACGAGTGTGATGTGGAAGGTGGACAGTCTGACGAATTGGGAGGAAGCTGACGGACTCCAGTGTTTCTTCACAGTGGGAAGTAATCAATGTGAGAGTAATGTAACTGTCACCATTTACAagaggCCAGACAGGGTTACACTGAGCTCTGTGTCTGATGTGTGGGTAGAGGGAGATCAGACAGAGCTGTGGTGTGAGATTGAAAACGTTGGTCCTGGACATAAACTCAGTGTACGCTGGAGCAGAGCGGATCCAAAGCACAACAGCGCACTTTCACACAATTCAGTGAAAGCGGCGTTCCCAGACTTGGTAAATGAGATGAAGAACGTGAGCATGACAGTGAACTTAACTGTTACGCCCAGACGTGAGGATGATGGAGTGCAGTATCAGTGTGCAGCTGTGCTGAATCTGGAGAAAGATCCACTCGTGTTCCCATCACAACCACTCAACGTCACTGTACACTataaaCCATTCATTACAGAGCCTTTAGATACTAAAGTAACAGTTTCTGAAGGTGAAGACCTGATGATGAACTGCTCAGCACAAGGAAACCCGAGCCCTCAGTATAAATGGACTTCACCTGATCACACAACCATCTCGGACTcctccatcatcatcagtaGCATCCTTAAAGAAGATCAGGGTCAGTACACCTGCACTGCTTTCAATAACCTGGACCAGGCAACTAGGAATGTGACAGTGACAGTTACAGCATGTACAGATCTTGTTGTCACTCCGGCGTCTCTGCTGGTGGAGTATGGAGACCCTGCTGAAGTGAACTGCTCCATACCGAGCAAACCTGAGACAGATTATACGCTGGGCTGGGAGTCTAAAACATCACAGCCAGTTACAGACACTGAGACGAGTGTGATGTGGAAGGTGGACAGTCTGACGAATTGGGAGGAAGCTGACGGACTCCAGTGTTTCTTCACAGTGGGAAGTACTCAATGTCAGAGTAATGTAACTGTCACCATTTACAagaggCCAGACAGGGTTACACTGAGCTCTGTGCCTGATGTGTGGGTAGAGGGAGATCAGACAGAGCTGTGGTGTGAGATTGAAAACGTTGGTCCTGGACGTAATCTCAGTGTACGCTGGAGCAGAGCAGATCCAAAGCACAACAACGCTTTCACACAATTCAGTGAAACGACGTTCCCAGACTTGGTAAATGAGATGAAGAACGTGAGCATGATAGTGAACTTAACCGTTATGCCCAGACGTGAGGATGATGGAGTGCAGTATCAGTGTGCAGCTGTGCTGAATCTGGAGAAAGATCCGCTCGTGGTCTCATCACAACCACTCAACGTCACTGTACACTataaaCCAATCATTACAGGGCCTTTAGATACTACAGTAACAGTTTCTGAAGGTGAAGACCTGATGATGAACTGCTCAGCACAAGGAAACCCGAGCCCTCAGTATAAATGGACTTCACCTGATCACACAACCATCTCAAACTcctccatcatcatcagtaGCATCCTTAAAAAAGATCAGGGTCAGTACACCTGCACTGCTTTCAATGGCCTGGACCAGGCAACTAGGAATGTGACAGTGACAGTTACAGCATGTACAGATCTTGTTGTCACTCCGGCGTCTCTGCTGGTGGAGTATGGAGACCCTGCTGAAGTGAACTGCTCCATACCGAGCAAACCTGAGACAGATTACATGCTGGGCTGGGAGTCTAAAACATCACAGCCAGTTACAGACACTGAGACGAGTGTGATGTGGAAGGTGGACAGTCTGACGAATTGGGAGGAGGCTGACGGACTCCAGTGTTACTTCACAGTGGGAAGTACTATGTGTGAGAGTAATGTAACTGTCACCATTTACAagaggCCAGACAGGGTTACGctgagctctgtgtctgtgtctgatgTGTGGGTAGAGGGAGATCAGACAGAGCTGAGGTGTGAGATTGGAAACGTTGGTCCTCGTCGTAAACTCAGTGTACGCTGGAGCAGAGCGGATCCAAAGCAAAACAACGCTTTCACACAATTCAATGAAACGTCATTCCCAGAGTTAGTAAATGAGACGAAAAATGTGAGCAAGACAGTGAAACTGAAAGTTACGCCCAGCAGTGAGGATGATGGAGTGCAGTATCAGTGTGCAGCTGTGCTGAATCTGGACCAACATCCGCTCATGTTCACATCACAACCACTCACCGTCACTGTACACTTTTATTACACCTGTAAACATGTGACAAGGTTAGCATTAGCACTAGCTACACCAAGTTCAAAGTTAGCCCTAACTATACAGGATTTAGCTTTAGGACTAGGTATATTGAGTTTAGCTAAACTTAAATATTAGCTCCACAGTATGCAGCCCCTCTGATCACCAGGGCGAGTCTCTGTATGGTACCTGAACCACCTCACCTGGCTCTTCTCAATGCAGAGGAGCAGTGACTCTACTCCGAGGTTCTCACGGATTCCCGATAGCTTGTGACTATAGGTGAGGACAGAGACATAGATCGCTAAGTAAACAGAAAGATTTGTCCTTTGCCACTAGCTGAGCTTCTGCTTCACCACCAGCTTCCTTTTCCAGTGCCTGAACCTTTTAGgttagtttcaggtcttttgtgcgGGTTCTGAGAGCTAGTTGGGGTGGAAACTgtgctgagacctggcaacatAGCACACCAGTGAAATCCTGACCAAACAGCTAATATTGAAGTATTAGctccatgtttaattttgttctgTTCTGATGCACAGCTTTTCTTTCATTATATGCTGCtaagagtctgaatggatcaTACAAACACTGTGTCATTGCTGTGTTTCAATGACTGTAATTTTATAATACTGAATGTTTCAATCAGTTGAAAATGGAAATctaaggcacatattcaggTCATGCATTTCAATATTATACTATATTGAAAAAATATCGTATAGAGACACCAACGTATCGTAACATATCAAATTTTGTATATCGTTACCAGGCTCATGTTTATGTATGGATTATCAgtgatttactttatttacttatattttct

Function

GO: NA

KEGG:

id description
ko05418 Fluid shear stress and atherosclerosis

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034298503.1 True 3328 mRNA 0.46 10 910572 950118

Neighbor

gene id symbol gene type direction distance location
utp18 utp18 coding upstream 3802 893766 ~ 906770 (+)
si:dkey-89b17.4 LOC108257022,LOC108412773,LOC107563026,LOC107666327,LOC107753959,LOC107727719,LOC107665149 coding upstream 93329 806305 ~ 817243 (+)
LOC113528988 LOC108257047 coding upstream 199063 706407 ~ 711509 (+)
LOC113528992 LOC108257051,LOC108438410 coding upstream 217076 690756 ~ 693496 (+)
LOC113529047 LOC108256995,LOC108256994,LOC108438408,LOC107666325 coding upstream 225084 682280 ~ 685488 (+)
ube2m ube2m,ubc12,LOC107694448,LOC107570967,LOC107573069 coding downstream 74360 1024478 ~ 1033504 (+)
kpnb1 kpnb1,LOC107570969,LOC107703644 coding downstream 88847 1038965 ~ 1063015 (+)
LOC113529039 LOC108257110,LOC105013290 coding downstream 115649 1065767 ~ 1076546 (+)
LOC113529037 samd14 coding downstream 130876 1080994 ~ 1103079 (+)
gabpb2a LOC108257329 coding downstream 186959 1137077 ~ 1147087 (+)
G336202 NA non-coding upstream 3680 889818 ~ 906892 (+)
G336209 NA non-coding upstream 4084 905239 ~ 906488 (+)
LOC113528997 NA non-coding upstream 131546 775875 ~ 779026 (+)
G336167 NA non-coding upstream 137744 768195 ~ 772828 (+)
G336143 NA non-coding upstream 266434 643931 ~ 644138 (+)
G336241 LOC108257176 non-coding downstream 56114 1006232 ~ 1008093 (+)
G336243 NA non-coding downstream 65854 1015972 ~ 1016631 (+)
G336214 NA non-coding downstream 70121 1020239 ~ 1064155 (+)
G336246 NA non-coding downstream 77938 1028056 ~ 1127409 (+)
G336245 sf3b4,LOC102792253 non-coding downstream 167525 1117643 ~ 1152914 (+)
G336172 NA other upstream 115877 794117 ~ 794695 (+)
G336161 LOC108257052 other upstream 160898 739369 ~ 749674 (+)
G336034 NA other upstream 623357 286849 ~ 287215 (+)
G336213 NA other downstream 23551 973669 ~ 976321 (+)
mllt11 mllt11 other downstream 182837 1132955 ~ 1136124 (+)
G336334 NA other downstream 319691 1269809 ~ 1335574 (+)
G336350 cdk12 other downstream 375698 1325816 ~ 1327507 (+)
G336433 parp10 other downstream 707199 1657317 ~ 1659459 (+)

Expression


Co-expression Network