prcc (prcc)


Basic Information

Item Value
gene id prcc
gene name prcc
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 1578998 ~ 1586462 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034298552.1
TAAAATACGTCAAGGGTGctaacagaagaagaagaagaacggGATTTGTTTACAGAGACACGTtagctgttagctagctacgtgtttttggattaaaataatgaataaagaataataacTTGTTGAAAGAATAATTGTTAACGTGTTTAGATCATTATCGGTTAGGAACAATGATGAGACGACAGAATGTGTGGTTTACGGAGATGAAATTTGAACAGATAGCTGGAAAGCTAGCACGCTAGGTTAGCATCAGTGTTAGCTAGCTGCgctggtagagagagagagagagagagagagagttaagcGGTTAATTAAGAGCGGTTTAATAACTAAAGCGCTgattagtgagtgagtgtgattaTATGAAACCGGGTGGAACATGTCTCTAGTGGCGTATGACAGCAGCGACGACAGTGAGCGCGATGATCCGAGTCCTGAGCCCCGCAGCTCGGCGAAACCCGGCGGCTTGTTCGCCTCTCTGCCCGCGCCCAAGCGCTCAGAGCCCGCGGTGGGGAACCAGAAGCCCGGGCCGGAGCTGCCCAGAGCCAAGAAGCGCTCAGAGCCGGTCAGGATCAGCGCTCCGGAGATCCGAGGGGACAGCtcggatgaggatgaagatgaaccTGTGAGGAAGAAAGTGGGATCTCAGGGTGGTGGTCTGTCGTCTCTTCTCCCCCAACCCAAACACCTGAGTGTGAAGGAAACGCAGCGCCCCCTGGTGCCCCACACCCTCACCAAACGCCCCGCCCCCGCCGCTCACGCCAAAGCCAGCAAGCCGGCGTCTCAGGGCGTGTCCGGGACGAGCGCGTCTCCGTCGGCCATTAAAGCGGCGGCCAAGTCGGCATCGCTGCAGTTCGCCCGGCAGATCGCTGCAGACGAGGAGGGCAGCGACGACGAACTCGCCCCCGAGAATTACTTCTCCCTGTCGGAAAGCTCGTCAGAACCGGCGGCCGGGGCGTCGTATCCCGATCCTCAGCCGTACGCTCCGTCGCTGCAGCCTCCTCCCAGCGCCGAGGACGCGCCGCTCGACTTCGGCTCCAGCGCAGAGTCCCAGCCGAGGCCAGCGTGGGGCGCTCACGAGTACCACACCGCCGATTATCAACCGCACGATCACAAACCCAGcgctcaggagTACTACAGCGAGAGTTACTATCAGGAGCAGAACTCCGGGTTTGGTGAGCAGGAAGAAGCAGAATCTTCCACTCTGTTCAACGATGAAGCATTCCGTAGGCTGCAGGGGAAACAGAACCGAGGGAAGGAAGAGATCAAGTTCTTGGAGATTAAAGGTGATGATCAGCTCAGTGGCCATCAGCAGTGGATGATGAAGAACATGACGACGGAGACGGAGCCGCGCAGATCCTTCAGCAAGAAAAAAGGAGATCAGCCGACGGGGCAGCAGAGACGCAAACACCAGATCACATATCTGATTcatcaggcTAAGGAGCGAGAGTTGGAGCTGAAGAACAACTGGTCTGAGAATAAACTCACTCGCAGGCAAACTCAGGCCAAATACGGCTTCTAGACACCAGATAcggcttctctctctcccactctctctccctctctctctctctctctctctctctctctctctctctctctctctctctctctctctcctctc

Function

symbol description
prcc Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in papillary renal cell carcinoma. Orthologous to human PRCC (proline rich mitotic checkpoint control factor).

NR:

description
PREDICTED: proline-rich protein PRCC-like

GO: NA

KEGG:

id description
K13105 PRCC; proline-rich protein PRCC

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034298552.1 True 1624 mRNA 0.55 7 1578998 1586462

Neighbor

gene id symbol gene type direction distance location
mrpl24 mrpl24,LOC107559719,LOC107693309,LOC107669969 coding upstream 842 1574337 ~ 1578156 (+)
mindy1 fam63a,LOC107693308,LOC107559718,LOC107669987,LOC106569905 coding upstream 34467 1530514 ~ 1544531 (+)
LOC113546241 LOC108257282,LOC108257284,LOC108257326,LOC108257286,LOC108257289,LOC108257310,LOC108280069,LOC108257281 coding upstream 57248 1444104 ~ 1521750 (+)
LOC113546297 LOC108257310,LOC108257281,LOC108257282,LOC108257326,LOC108257289,LOC108257286,LOC108257284 coding upstream 87771 1471050 ~ 1491227 (+)
LOC113546243 LOC108257322 coding upstream 141576 1427985 ~ 1437422 (+)
lix1l lix1l,LOC107693252 coding downstream 10385 1596847 ~ 1608854 (+)
adck5 adck5 coding downstream 24152 1610614 ~ 1629996 (+)
spag1a spag1,spag1a,LOC108438857,LOC107748364 coding downstream 96872 1683334 ~ 1701731 (+)
grhl2b grhl2,grhl2b,LOC107748368,LOC107672862,LOC107550099,LOC107552317,LOC107738316,LOC107698657 coding downstream 218208 1804670 ~ 1842048 (+)
psmg2 psmg2 coding downstream 296983 1883445 ~ 1891699 (+)
G336267 NA non-coding upstream 27798 1549855 ~ 1551200 (+)
G336391 NA non-coding upstream 29768 1548991 ~ 1549230 (+)
G336283 NA non-coding upstream 30106 1548665 ~ 1548892 (+)
LOC117595828 NA non-coding upstream 79977 1494315 ~ 1499021 (+)
G336364 NA non-coding upstream 221409 1357324 ~ 1357589 (+)
G336256 pabpc1,LOC107672855 non-coding downstream 151701 1738163 ~ 1741007 (+)
G336261 NA non-coding downstream 169723 1756185 ~ 1757404 (+)
G336481 NA non-coding downstream 234670 1821132 ~ 1842536 (+)
G336482 NA non-coding downstream 256127 1842589 ~ 1842970 (+)
G336849 fam210a,LOC107675659,LOC107754921,LOC107566562,LOC107668710 non-coding downstream 379514 1965976 ~ 1984496 (+)
G336334 NA other upstream 243424 1269809 ~ 1335574 (+)
G336350 cdk12 other upstream 251491 1325816 ~ 1327507 (+)
mllt11 mllt11 other upstream 442874 1132955 ~ 1136124 (+)
G336213 NA other upstream 602677 973669 ~ 976321 (+)
G336172 NA other upstream 784303 794117 ~ 794695 (+)
G336433 parp10 other downstream 70855 1657317 ~ 1659459 (+)
polr2k NA other downstream 88578 1675040 ~ 1680352 (+)
G336822 ldlrad4 other downstream 289812 1876274 ~ 1945866 (+)
LOC117595892 LOC108257284,LOC108257282,LOC108257281,LOC108257289,LOC108257310,LOC108272567,LOC108261104,LOC108280065,LOC108272472,LOC108261175,LOC108279530,LOC100526730,LOC108257326,LOC108257286,LOC108261265 other downstream 599430 2185892 ~ 2351749 (+)
LOC113546301 LOC108257282,LOC108257281,LOC108257284,LOC108257326,LOC108257289,LOC108257286,LOC108257310 other downstream 715683 2302145 ~ 2340261 (+)

Expression


Co-expression Network