mrpl24 (mrpl24,LOC107559719,LOC107693309,LOC107669969)


Basic Information

Item Value
gene id mrpl24
gene name mrpl24,LOC107559719,LOC107693309,LOC107669969
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 1574337 ~ 1578156 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034298554.1
CCACCTTGTGCGCATGCGTGGTAATGGTCTACTCGGGGACGTGCGTTTGACCGCAGTGTGTTTAGGTTTATAACTTTAGATTTTGTAAAGTGGCTTATTAAAGGATTTAttcagactttatttatttattccttcacTCGGCTAGCTGAGTGGTGTTACTGAGACACAgcatgcGTCTGACGGCTCTGCTCTCCATGGCGGCGAAGGCTGCGTTTCCCCGGGATTACCGCTACGGGACGAACAGGCCGTGGACGGTGGCGGCGCGGAGACTCAATCCTCcggggaagaggaggaggaaggtgTTCGTGGAGCCGATCAGCCCCGAGGACTGGAGTGTGTTCAGAGGGGACGTGGTGGAGATCCTCTCGGGTAAAGATAAAGGGAAGCAGGGGAAAGTCACTCAGGTGTTCCGCCACCGTAACTGGGTCATTGTCGAGGGGTTCAATACGcaCTACAGGTACATCGGCAGGTCTGGAGACTACAGAGGGACGTACATTGGGAGTGAAGCTCCTCTGCTGCTGAAGGACGTCTCACTGGTCGACCCCACAGACAGGAAAGCCACGGAGACGGAGTGGAGGTTCacagaggagggagagaaggTCCGGGTTTCCGTCAACGGGCGGATCATCCCCAAACCCGTCTTTCAGAGGAGGGACGGCATCATACCACAGCAGTGGAAAGatggACCGAAGGACACGTCTCCTGAAGACGCTCTGGAGAAAACGTACACTCCGTCGCTGAAGACTCTGGAGGAGGAAGTGATGGAGAAAATGAACATCCAGGAACCGAGAAGACCCCGAAGAAGCTTCTGGTACTGAGACGCAGAAGACGCAGAAGACGCAGAAGACGCAGAAGACGCAGAAGACGCAGAAGCAGGAGGATGGCGGAATGTTCTTTAAGCTGTAATGACAACGTGGATTTGCAATAAACGTGTGTTTGTCCGAC

Function

symbol description
mrpl24 Predicted to enable RNA binding activity. Predicted to be a structural constituent of ribosome. Involved in ATP biosynthetic process and cellular respiration. Predicted to be located in ribosome. Predicted to be part of mitochondrial large ribosomal subunit. Predicted to be active in mitochondrion. Is expressed in brain; heart; intestine; and liver. Orthologous to human MRPL24 (mitochondrial ribosomal protein L24).

NR:

description
39S ribosomal protein L24, mitochondrial

GO:

id name namespace
GO:0006412 translation biological_process
GO:0005840 ribosome cellular_component
GO:0005739 mitochondrion cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02895 RP-L24, MRPL24, rplX; large subunit ribosomal protein L24

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034298554.1 True 945 mRNA 0.54 7 1574337 1578156

Neighbor

gene id symbol gene type direction distance location
mindy1 fam63a,LOC107693308,LOC107559718,LOC107669987,LOC106569905 coding upstream 29806 1530514 ~ 1544531 (+)
LOC113546241 LOC108257282,LOC108257284,LOC108257326,LOC108257286,LOC108257289,LOC108257310,LOC108280069,LOC108257281 coding upstream 52587 1444104 ~ 1521750 (+)
LOC113546297 LOC108257310,LOC108257281,LOC108257282,LOC108257326,LOC108257289,LOC108257286,LOC108257284 coding upstream 83110 1471050 ~ 1491227 (+)
LOC113546243 LOC108257322 coding upstream 136915 1427985 ~ 1437422 (+)
LOC113546318 LOC108257321 coding upstream 147730 1406265 ~ 1426607 (+)
prcc prcc coding downstream 842 1578998 ~ 1586462 (+)
lix1l lix1l,LOC107693252 coding downstream 18691 1596847 ~ 1608854 (+)
adck5 adck5 coding downstream 32458 1610614 ~ 1629996 (+)
spag1a spag1,spag1a,LOC108438857,LOC107748364 coding downstream 105178 1683334 ~ 1701731 (+)
grhl2b grhl2,grhl2b,LOC107748368,LOC107672862,LOC107550099,LOC107552317,LOC107738316,LOC107698657 coding downstream 226514 1804670 ~ 1842048 (+)
G336267 NA non-coding upstream 23137 1549855 ~ 1551200 (+)
G336391 NA non-coding upstream 25107 1548991 ~ 1549230 (+)
G336283 NA non-coding upstream 25445 1548665 ~ 1548892 (+)
LOC117595828 NA non-coding upstream 75316 1494315 ~ 1499021 (+)
G336364 NA non-coding upstream 216748 1357324 ~ 1357589 (+)
G336406 NA non-coding downstream 1639 1579795 ~ 1580300 (+)
G336275 NA non-coding downstream 8091 1586247 ~ 1588294 (+)
G336256 pabpc1,LOC107672855 non-coding downstream 160007 1738163 ~ 1741007 (+)
G336261 NA non-coding downstream 178029 1756185 ~ 1757404 (+)
G336481 NA non-coding downstream 242976 1821132 ~ 1842536 (+)
G336334 NA other upstream 238763 1269809 ~ 1335574 (+)
G336350 cdk12 other upstream 246830 1325816 ~ 1327507 (+)
mllt11 mllt11 other upstream 438213 1132955 ~ 1136124 (+)
G336213 NA other upstream 598016 973669 ~ 976321 (+)
G336172 NA other upstream 779642 794117 ~ 794695 (+)
G336433 parp10 other downstream 79161 1657317 ~ 1659459 (+)
polr2k NA other downstream 96884 1675040 ~ 1680352 (+)
G336822 ldlrad4 other downstream 298118 1876274 ~ 1945866 (+)
LOC117595892 LOC108257284,LOC108257282,LOC108257281,LOC108257289,LOC108257310,LOC108272567,LOC108261104,LOC108280065,LOC108272472,LOC108261175,LOC108279530,LOC100526730,LOC108257326,LOC108257286,LOC108261265 other downstream 607736 2185892 ~ 2351749 (+)
LOC113546301 LOC108257282,LOC108257281,LOC108257284,LOC108257326,LOC108257289,LOC108257286,LOC108257310 other downstream 723989 2302145 ~ 2340261 (+)

Expression


Co-expression Network