fbxl20 (fbxl20,LOC107727724,LOC107665129,LOC107666314,LOC107549884,LOC107563017)


Basic Information

Item Value
gene id fbxl20
gene name fbxl20,LOC107727724,LOC107665129,LOC107666314,LOC107549884,LOC107563017
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 1358010 ~ 1376292 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034298619.1
tgttacTGGGgtaaggaggaggaggaggaggaggaggaggagatctGCAGTGAAACAGATAAGCTCGGCTTAATTCCAGCTCAGGAGCGCCTCTGTTCTGTGACTGAagaacagagaggaggagaagtctgtgagtgtgtgagactggGGGAGAATGAGCAGGAGGAGAAGGCTGAATATCgccagcagcagcacacacagctcGCTTTTGCCCTTTTAAACCCGCGGATCATTAGCAGATCGAGTCATCTGACAGAAATAGTCCGGAGTGGAATGGGGAAGGAGGTGAACGGAGTGTCGCGGAGCCGCTTTGAGATGTTCTCAAACAATGATGAGGCCATCATCAATAAGAAGCTGCCAAAGGAACTGTTGTTACGaATTTTCTCCTTTCTGGATGTGGTCACCCTCTGTCGCTGCGCACAAGTGTCTCggTCGTGGAACGTTCTGGCTCTAGATGGCAGTAACTGGCAGCGCATCGACCTCTTCGACTTCCAGAGGGACATTGAgGGTCGTGTGGTAGAGAACATTTCAAAGCGATGTGGAGGTTTCCTGAGGAAGCTCAGTCTCCGAGGCTGTTTAGGTGTGGGAGACAGCGCActcagGACGTTTGCACAGAACTGCAGAAACATCGAGCTGCTCAGTCTGAACGGCTGTACAAAGAtcacagacagTACCTGTAACAGTCTGAGTAAATTCTGTCCCAAACTGAAGCACTTGGATCTCGCCTCATGCACCTCCATCACCAACCTGTCTCTCAAAGCACTCAGTGAGGGCTGTCCGATGCTGGAGCAGCTGAACATCTCGTGGTGTGATCAGGTGACCAAAGATGGCATCCAGGCGCTCGTCCGCTGCTGTCCGGGGCTGAAAGGCCTGTTCCTCAAAGGCTGCACACAGCTGGAAGACGAGGCTCTGAAACACATCGGTGCTCACTGTCCAGAGCTGGTCACTCTCAACCTGCAGACATGTTcaCAGATCACAGATGAAGGCTTGATAACGATTTGTCGAGGTTGTCATCGGCtgcagtctctgtgtgtgtctggctgTGCAAACATCACAGACGCCATTCTAAATGCCCTGGGACAGAACTGCCCTCGTCTCagaaTATTAGAAGTGGCTCGCTGTTCACAACTCACAGACGTCGGCTTTAGCACACTCGCACGGAATTGTCATGAGTTGGAGAAGATGGATCTGGAGGAGTGTGTACAGATCACAGACAACACGCTCATCCAGCTGTCCATACACTGCCCTCGGCTCCAGGTTCTCagtctGTCTCATTGTGAGCTGATCACGGATGAGGGGATTCGTCACTTGGGCAGCGGGCCGTGTGCTCACGACCGACTGGAGGTGATCGAGCTCGATAACTGCCCGCTCATCACCGACGCCTCGCTGGAGCACCTCAAAACCTGCCACTGCCTCGACCGCATTGAGCTGTACGACTGCCAACAGATCACACGCGCGGGGATTAAGAGGCTCAGAACTCACTTGCCCAACATTAAAGTCCACGCCTACTTTGCACCTGTGACTCCGCCACCTTCGGTAGGAGGAAGTCGACAGAGGTTTTGCCGCTGCTGTATCCTGCTATGATGTCACAGTCTCCGCCTCCTCGACCTTggatgacctttgaccctgatTGTCCAGTAGCACATGCTGATGGATCACTTGGTAAAGCAAACgagggagagagacatagaaagagagagagacagacagagagaggtgtgtgtatgtgtgtgtgtgtgtgtccttacaAAGTGTTAAATATGTTGGGTTTCTCACTTTTCCTTCTAAAATCCACTGCACATCTAAAAGTATTTATAATTCTTAAAATAAGAATGCACAGTGTTGCTGAACAGCGCCCCCTTCTGCCAGGTAGACATGAAAGGTGGGGCAGTAAGTGAGCAGTCGATGAGTCATGAGTCATTTGGGGAGTGGTTCGGTTAGTCATGGGTCAGTTAATGTGTCTGTGAGTCGAGTCCAAGAGTCGGTTAGTGAGTGAGGCATGAGTCAGTCAGCAAGTGAGTCATGGATCGTGAGTCGGTCTGCAAGTGAGTCATGAGTTGAATAGACGAGTCCAGGAGTCGAGTCCAGGAGTCGGTTAGTGAGTGATGCATGActtggtgagtgagtgagtcatgTGTCAATCAGCAAGTGAGTCATGAGTCCAGGAGTCGAGTCCAGGAGTCGAGTCCAGGAGTCGAGTCCAGGAGTCGAGTCCAGGAGTCGAGTCCAGGAGTCGAGTCCGTCATGACTtgttgagtgagtgagtcatgAGTCAGTCAGCAAGTGAGTCATGGGTTGGTTAGTGAGTCAATTGGCAAGAGAGTCATAGATCAATTAGTGAGTCCAAATGTCGAGTCCAAATGTCGAGTCTGGGAGTCGAGTCTGGGAGTCAGGCAAGGCTTAGTCAGTGAGTCATTTGAATGAGTTATGAGTCAGGTGAGTCATATGGATTAGTCAGGTGAGATAGGAGTCAGTCtgttgagtcagtgaatcacatctaaaaaattaaaattataaacgTGACCATTGCTCCCAAATTCatacttaattatttttattgaacTAGTGCTGTTTTCCAAAAGCTCTTCTAGGACAAACTTTAAAAGCCACCATGaatggtcacacacacacacacacacacacacacactgtctctctctctctctctgtctgaggtTTATCATACAGAGGAAGCTGACTATTTTTCTAAAGCAGTAAAATATGCCAAAAGCTGCATGTTACAAATCTAgtttttataaaaaaagaaaaaaaaacaatccataTGATGGGCGGGGCCTGAACACAGGCAGCCAATGGGGAAGCAGGAATGGATGACTCAGCGGCATCACAACCAGCCAGCCAATCAGACTGGACCGGATCGCAAGAGGTACATGGAACTTTGAGTGGGCGGGGCCTGCATGCACAGCCAATTAGAGATAAGAAAGGAGTGAGTGGTGTCACAGTCGGCCAATCCGATCGCAGGAGGACAGAGACGATCAGTGACATCATACATGGTGGATTTAAAGAGTGATGGAAAGTTCAcaccatttttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgccccACCTCCACATGAGAAACCAGAATGAGAAAATGAgctcaaccaatcagagagtgtgtattagtgttgtCACTGTCAATatgttttcttgtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatatgtatgtgtgtgtggcagaggCTTTGGTTTACACACTCCACCCATGAAGGAGAAACTGgatccacacacactctgattcATCACTACAGGAGCTGACTGGTTTaagaaacatcacacacacacacagacacacacacacacaatgtctctCCATTTTACacacgtctgtctgtctgtctctctgtctctgtctctctctctctctctttctctctctttctcactttgtctttctgtttgtttgtacaGTACAGAACACacttggagtgtgtgtatgcgtgtgtgtgtgtgtgtgtgtgtgtgttgaggatgATGTGACTGTAGTTATTGCAATTACACTTGTTGTAAATCTGTTCccttttactttgtttttgttttcctttttacgATTAACccctataaataaataaatgaataaatgaatatgtatgtatgaataaatatataactatattattattaa

Function

symbol description
fbxl20 Predicted to be involved in SCF-dependent proteasomal ubiquitin-dependent protein catabolic process. Predicted to be part of SCF ubiquitin ligase complex. Orthologous to human FBXL20 (F-box and leucine rich repeat protein 20).

NR:

description
PREDICTED: F-box/LRR-repeat protein 20

GO: NA

KEGG:

id description
K10268 FBXL2_20; F-box and leucine-rich repeat protein 2/20

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034298619.1 True 3698 mRNA 0.48 15 1358010 1376292

Neighbor

gene id symbol gene type direction distance location
rab25a rab25a,LOC108257330,LOC108442629,LOC107669986,LOC107693307,LOC107753478 coding upstream 188722 1160733 ~ 1169288 (+)
gabpb2a LOC108257329 coding upstream 210923 1137077 ~ 1147087 (+)
LOC113529037 samd14 coding upstream 254931 1080994 ~ 1103079 (+)
LOC113529039 LOC108257110,LOC105013290 coding upstream 281464 1065767 ~ 1076546 (+)
kpnb1 kpnb1,LOC107570969,LOC107703644 coding upstream 294995 1038965 ~ 1063015 (+)
LOC113546245 NA coding downstream 3361 1379653 ~ 1387764 (+)
LOC113546318 LOC108257321 coding downstream 29973 1406265 ~ 1426607 (+)
LOC113546243 LOC108257322 coding downstream 51693 1427985 ~ 1437422 (+)
LOC113546241 LOC108257282,LOC108257284,LOC108257326,LOC108257286,LOC108257289,LOC108257310,LOC108280069,LOC108257281 coding downstream 67812 1444104 ~ 1521750 (+)
LOC113546297 LOC108257310,LOC108257281,LOC108257282,LOC108257326,LOC108257289,LOC108257286,LOC108257284 coding downstream 94758 1471050 ~ 1491227 (+)
G336364 NA non-coding upstream 421 1357324 ~ 1357589 (+)
G336349 NA non-coding upstream 22103 1320815 ~ 1335907 (+)
G336337 NA non-coding upstream 49923 1307321 ~ 1308087 (+)
G336319 NA non-coding upstream 164836 1192687 ~ 1193174 (+)
G336313 NA non-coding upstream 170285 1183568 ~ 1187725 (+)
LOC117595828 NA non-coding downstream 118023 1494315 ~ 1499021 (+)
G336283 NA non-coding downstream 172373 1548665 ~ 1548892 (+)
G336391 NA non-coding downstream 172699 1548991 ~ 1549230 (+)
G336267 NA non-coding downstream 173563 1549855 ~ 1551200 (+)
G336406 NA non-coding downstream 203503 1579795 ~ 1580300 (+)
G336334 NA other upstream 22436 1269809 ~ 1335574 (+)
G336350 cdk12 other upstream 30503 1325816 ~ 1327507 (+)
mllt11 mllt11 other upstream 221886 1132955 ~ 1136124 (+)
G336213 NA other upstream 381689 973669 ~ 976321 (+)
G336172 NA other upstream 563315 794117 ~ 794695 (+)
G336433 parp10 other downstream 281025 1657317 ~ 1659459 (+)
polr2k NA other downstream 298748 1675040 ~ 1680352 (+)
G336822 ldlrad4 other downstream 499982 1876274 ~ 1945866 (+)
LOC117595892 LOC108257284,LOC108257282,LOC108257281,LOC108257289,LOC108257310,LOC108272567,LOC108261104,LOC108280065,LOC108272472,LOC108261175,LOC108279530,LOC100526730,LOC108257326,LOC108257286,LOC108261265 other downstream 809600 2185892 ~ 2351749 (+)
LOC113546301 LOC108257282,LOC108257281,LOC108257284,LOC108257326,LOC108257289,LOC108257286,LOC108257310 other downstream 925853 2302145 ~ 2340261 (+)

Expression


Co-expression Network