LOC117595854 (LOC108256799)


Basic Information

Item Value
gene id LOC117595854
gene name LOC108256799
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 345309 ~ 346253 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034298629.1
ATGGATTATTCTAccaattttacatatttaacacTGGAAGGACATGTTGAATTAGAGCATTACagatatctttattttatatttacactcactgtctaTATAATGATTATCTGCTTTAATACTGTTATCATTTCTGTCATATTCAAAACGAAACGTCTCCATGAGCCCATGTACATTTTGATTGCTGCATTGCTTTGTAATGCTCTCCTTGGATCGACAGCTCTCTATCCTAAACTGCTCATTGATTTactgtctgaaaaacaaactgtgtcttataaagagtgtttatttcagGCATTTTGTATTTACACATATGGTGTATCAGAGTTCACACTGTTATCGACTATGGCTTATGACAGATATGTGTCCATCTGTAAACCATTACAATATGCAACTCTTGTAAAAATGTCCACGGTCAGAAAGCTCTTATTTTTATCATGGTTTATGCCTTCTTGTGAAGTTGGTGTCGGTGTTATTCTAGCATCGCAACTTCAactgtgtaaatttaaattgaaCAGAATATACTGTGATAATTATTCAGTTGTGAAATTAAGCTGTAAAGAAACATCACTTAATAACACATatggactttttatttttagcattgcTGTATTTCCTCCAGTGATCTTCATACTTTACTCTTATGTCAGGATCCTCTCAGTGTGTTTAAAGAATTCTAAAGATTTCAGAAGAAAAGCTCTACAGACCTGTTTACCACATCTTCTCATTTTCACAAATTTTTCTGTCAACGCAAGTTTTGAAATTATAAATTCTAGActtgaatcaaatcaaattccCCACATTATTGCCATGATCATGTCGGTTGAATTTTTAATCATTCCTCCTTTATTCAATCCCATAATATATGGATTAAAACTGCAggagatttataataatattaagaaaatatttaaatgtcaaaCAAGAACTCATGTTTCTTTTTAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034298629.1 True 945 mRNA 0.32 1 345309 346253

Neighbor

gene id symbol gene type direction distance location
LOC113529052 LOC108256839 coding upstream 8634 335731 ~ 336675 (+)
LOC113529054 LOC108256799 coding upstream 14751 329614 ~ 330558 (+)
LOC117595853 LOC108256799,LOC108256839 coding upstream 61887 282493 ~ 283422 (+)
LOC113529058 LOC108256799,LOC108262172 coding upstream 88159 256206 ~ 257150 (+)
LOC113529059 NA coding upstream 104881 237438 ~ 240428 (+)
LOC117595883 NA coding downstream 6465 352718 ~ 353438 (+)
LOC117595855 LOC108256799,LOC108256839 coding downstream 12704 358957 ~ 359901 (+)
LOC117595856 LOC108256799,LOC108256839 coding downstream 29224 375477 ~ 376101 (+)
LOC117595857 LOC108256799 coding downstream 33898 380151 ~ 381095 (+)
LOC117595858 NA coding downstream 47296 393549 ~ 394190 (+)
G336016 NA non-coding upstream 74426 213146 ~ 270883 (+)
G335897 LOC107737118 non-coding upstream 200838 127038 ~ 144471 (+)
G335896 NA non-coding upstream 202779 125194 ~ 142530 (+)
G335887 LOC108257212 non-coding upstream 291492 50894 ~ 53817 (+)
G335882 NA non-coding upstream 315161 29943 ~ 30148 (+)
G336041 NA non-coding downstream 7777 354030 ~ 404443 (+)
G336078 NA non-coding downstream 94186 440439 ~ 440785 (+)
G336111 NA non-coding downstream 247063 593316 ~ 593539 (+)
G336126 NA non-coding downstream 268019 614272 ~ 620153 (+)
G336115 NA non-coding downstream 276479 622732 ~ 626949 (+)
G336034 NA other upstream 58094 286849 ~ 287215 (+)
G336161 LOC108257052 other downstream 393116 739369 ~ 749674 (+)
G336172 NA other downstream 447864 794117 ~ 794695 (+)
G336213 NA other downstream 627416 973669 ~ 976321 (+)
mllt11 mllt11 other downstream 786702 1132955 ~ 1136124 (+)
G336334 NA other downstream 923556 1269809 ~ 1335574 (+)

Expression


Co-expression Network