LOC117595855 (LOC108256799,LOC108256839)


Basic Information

Item Value
gene id LOC117595855
gene name LOC108256799,LOC108256839
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 358957 ~ 359901 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034298631.1
ATGGATTATACTACCAACATTACATATCTAATACTGGATGGACATGTGGATTTAGAGCATTACagatatctttattttattatcactatcactatcaaCATAATGATTATCTGCTttaatacagttattatttttgtcatattcaaaaacaaacatctccatgagcccatgtatatttttattgctgcATTGCTTTGTAATGCTCTCTTTGGATCCACAGCTCTTTATCCTAAATTGCTAACTGATTTActgtctgaaaaacaaataatctcTGTTGGAGCTTGTTTATTTCAGGCATTTTGCATGTACACATATGGTGCAACAGAGTTCACGCTGTTATCAGCTATGGCCTATGACAGATATGTGTCCATCTGTAATCCATTACATTATGCAAATCTTCTAAAAATGTCCACTGTCAGAAAGATCTTATTTTTATCATGGTTTTTGCCTTGTTGTGAAGTTGGAATAGGCATTATACTAACATCCCGTCTTCAgctgtgtaaatttaaattaaatagaatATACTGTGATAATTATTCAATTGTGAAATTAAATTGTAGGGAAACATTTGTTAATAACTTGTATGGTCTTATCATGTCCAGCATTATTGTATTTCCTCCAGTGATCTTCATAATCTACTCTTACATTAGGATACTCGCTGTGTGTTTAAAGAAttctaaatatttcagaaaaaaagctttacagACCTGTTTACCACATCTTCttagtttcatatttttttctgtcaacacaagttttgaaattataaataacagactagaatcaaatcaaattccCCACATTATTGCTATGATCCTGTCACTTATTCCTTCTGTTATTACTCCTCTAATTAATCCTATAATATATGGATTAAAACTGCAAgagatttttaataatataaggAGATTAATTTCATGGAGAAAATGGGCACAAGTTTCTTTTTAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034298631.1 True 945 mRNA 0.31 1 358957 359901

Neighbor

gene id symbol gene type direction distance location
LOC117595883 NA coding upstream 5519 352718 ~ 353438 (+)
LOC117595854 LOC108256799 coding upstream 12704 345309 ~ 346253 (+)
LOC113529052 LOC108256839 coding upstream 22282 335731 ~ 336675 (+)
LOC113529054 LOC108256799 coding upstream 28399 329614 ~ 330558 (+)
LOC117595853 LOC108256799,LOC108256839 coding upstream 75535 282493 ~ 283422 (+)
LOC117595856 LOC108256799,LOC108256839 coding downstream 15576 375477 ~ 376101 (+)
LOC117595857 LOC108256799 coding downstream 20250 380151 ~ 381095 (+)
LOC117595858 NA coding downstream 33648 393549 ~ 394190 (+)
LOC117595878 LOC108259807 coding downstream 68417 428318 ~ 439616 (+)
LOC117595859 NA coding downstream 125315 485216 ~ 496318 (+)
G336016 NA non-coding upstream 88074 213146 ~ 270883 (+)
G335897 LOC107737118 non-coding upstream 214486 127038 ~ 144471 (+)
G335896 NA non-coding upstream 216427 125194 ~ 142530 (+)
G335887 LOC108257212 non-coding upstream 305140 50894 ~ 53817 (+)
G335882 NA non-coding upstream 328809 29943 ~ 30148 (+)
G336078 NA non-coding downstream 80538 440439 ~ 440785 (+)
G336111 NA non-coding downstream 233415 593316 ~ 593539 (+)
G336126 NA non-coding downstream 254371 614272 ~ 620153 (+)
G336115 NA non-coding downstream 262831 622732 ~ 626949 (+)
G336141 NA non-coding downstream 271873 631774 ~ 632301 (+)
G336034 NA other upstream 71742 286849 ~ 287215 (+)
G336161 LOC108257052 other downstream 379468 739369 ~ 749674 (+)
G336172 NA other downstream 434216 794117 ~ 794695 (+)
G336213 NA other downstream 613768 973669 ~ 976321 (+)
mllt11 mllt11 other downstream 773054 1132955 ~ 1136124 (+)
G336334 NA other downstream 909908 1269809 ~ 1335574 (+)

Expression


Co-expression Network