LOC117595859


Basic Information

Item Value
gene id LOC117595859
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 485216 ~ 496318 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034298637.1
gaaatggacatgcttCTCAGTCTTTTCTCTACTCACACCCCTCTTACTGTCCTTGGAGACTTCAATCTCCCTGctgacaagctccagtcctcttgccttctccctcttctccattCCTTTTCCTTAACTTTCAACAGCTGTCCTCCTACACATAAAGGAGGTAACACCCTGGACCTTGTCTTCAGTCGTCCCTTTCCTACTTCAGACATCTATGCTACccctctccacatctctgaccatctcttggtatccttcaccatcaccctccctgtCCTGCCTAAAACCATCAGCCATCTatatttctctcccactcgtaaaaaccttcactctatctccccttcctccttagcttcctgcactctatcatcccttcctgtccctgactccttttcctccctaccattaGAGCTtgccactgacactttcctctcctcactttcctcatccttggacctcctctgtcctctaacctctaaacccaggaagatttccagccctgctccttggctatcAGATGTGCTGCGCAGTaatcggagagaattaagaacagcagagaggaagtggaagaaatcgcaactcgacacagatctgGTCTCCTAtcgtgctctcctgtccaaattttcatctgaagtgacttctgctaagactgccttctacaaggaaaagctggaatcctctgcacaagatcctcgcaagctccacaacatcttttcttcactgctcaaccctccagctcctcctgctccatcctctctgactgctgaagactttgccactttttatgatgagaagattggaaaaatctgtcagacattcacttctactcctgctcctacactacacactgaggattctccttctcattcgctgacacagttttctaaactaacaacagaagagatcctgcaaatcatcttatcctgcaatcctaccacctgcccattggatccaatcccttcgacaatgctccagaccATGGATGGGCACGTGGTTGGATCAGTAACGGACACAGAGCTCCGCTTCGACTCAGATGCCAACAAGGTGGAGGTGGGGTACTGGTATGGGCAGTGGTACAGGAAAAAGTCTGCATCTTTCAAGAAGACTTTGATTTTTATGCAAGACAACGCTCCATCACGTGCATCAAAGTACTCCACTGCGTTGCTGGCCAGTAAAGGCCTTAAAGATGAAAAACTAATGACATGGCCCCCTTCTTCACCTGACTTAAACCCTATTGAGAACTTTTGGGCCCTTCTTAAGCAGGAAATTTATAGTGAAGCATCATCATCTACAACTTTACCTACACTCACTGCTTGTCTGGAGGAGATAAGGGCGTGGATGAATCATAACTTTCTCCAGCTGAACAGCTCAAAAACAGAAGCCATCCTCATTGTCCCCTCATCAGATCAGAACATCTACATAACTTGCATTACATTATCTGGCCAGGACATTCCTGTATCACCATTAGTCACCAATCTCGGAGTTAGGTTTGACCCTCATTTAACCTTTGaggctcacattaaacatctctgcaaaacatcatttcatcaccTCAGGAATATAGCCAGACCTCGTCCTACACTCACCCTACATGATGCTGAGAAACTCGTCCACGCCTTTGTCTCctccagactggactactgcaactctctTCTCATCGGGATCCCTAGCAAGAGCATCCAGAAACTCCAGCACATACAGAATAGTGCCGCTAGGATCCTGATGAGGGTGCGTAAATACGAACATATCACACCAATTCTTCAATCATTACACTGGCTTCCCATTTCTGCCAGGATTGAATACAAAGTCTCCCTCCTCACACATGGCAACGCCCCCACTTACCTTAAAGAACtcctcaccccacagatttcagCACATTCCCTCCGCTCCACAAACACTCATCGTCTCCTCCCCCCCTAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034298637.1 True 1917 mRNA 0.47 5 485216 496318

Neighbor

gene id symbol gene type direction distance location
LOC117595878 LOC108259807 coding upstream 45600 428318 ~ 439616 (+)
LOC117595858 NA coding upstream 91026 393549 ~ 394190 (+)
LOC117595857 LOC108256799 coding upstream 104121 380151 ~ 381095 (+)
LOC117595856 LOC108256799,LOC108256839 coding upstream 109115 375477 ~ 376101 (+)
LOC117595855 LOC108256799,LOC108256839 coding upstream 125315 358957 ~ 359901 (+)
LOC117595881 NA coding downstream 43370 539688 ~ 540721 (+)
LOC117595880 NA coding downstream 64960 561278 ~ 562318 (+)
LOC113528990 LOC108438405,LOC108438407,LOC108256992,LOC107727715,LOC107753917 coding downstream 163550 659868 ~ 664284 (+)
LOC113528991 LOC108256995,LOC108256994,LOC108438408,LOC108438412,LOC107666325,LOC107753917 coding downstream 178779 675097 ~ 678530 (+)
LOC113529047 LOC108256995,LOC108256994,LOC108438408,LOC107666325 coding downstream 185962 682280 ~ 685488 (+)
G336078 NA non-coding upstream 44431 440439 ~ 440785 (+)
G336041 NA non-coding upstream 80773 354030 ~ 404443 (+)
G336016 NA non-coding upstream 214333 213146 ~ 270883 (+)
G335897 LOC107737118 non-coding upstream 340745 127038 ~ 144471 (+)
G335896 NA non-coding upstream 342686 125194 ~ 142530 (+)
G336111 NA non-coding downstream 96998 593316 ~ 593539 (+)
G336126 NA non-coding downstream 117954 614272 ~ 620153 (+)
G336115 NA non-coding downstream 126414 622732 ~ 626949 (+)
G336141 NA non-coding downstream 135456 631774 ~ 632301 (+)
G336143 NA non-coding downstream 147613 643931 ~ 644138 (+)
G336034 NA other upstream 198001 286849 ~ 287215 (+)
G336161 LOC108257052 other downstream 243051 739369 ~ 749674 (+)
G336172 NA other downstream 297799 794117 ~ 794695 (+)
G336213 NA other downstream 477351 973669 ~ 976321 (+)
mllt11 mllt11 other downstream 636637 1132955 ~ 1136124 (+)
G336334 NA other downstream 773491 1269809 ~ 1335574 (+)

Expression


Co-expression Network