LOC117595868


Basic Information

Item Value
gene id LOC117595868
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 11869215 ~ 11871010 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034298654.1
ATGGGCAACCTAAGGCTGAATAACGTGGACAAGGGCGGACTAAAATTGCCTAAGGGACTAAAGATCCCTAAGGAGGACAACGGCAGACTAAAGCTGCCTAAAGTAGACAACAGCGGATTAAAGCTGCCTAAGGCAGACAATGGTGGATTACAGCCGCGTAAGGCGGACAACGGCGGACTAGAGCTGCCTAAGGTGAACAAGGTTGGACTAAAAGCAGAGAAGGGCAGACTAAAGCTGCCTAAGGTAGAGATGGCCACACTAAAGCTGCCTAAGGTAGAGATGGCCACACTAAAGCTGCCTAAGGTGGATAAGGGTGGATTAAAGCTACCTAAAGCGAACAAGGGTGGACTAAAGCTGCGTAAGGCGGACAAGGGCAGACTAAAGCTGCCTATGGTGGATAAGGGTAGATTAAAGGCAGAGAAGGGTGGACTAAAGCTGTCTAAAGCAAATAAGGGCGGACTAAAGCTGCTTAAAGTGAATAAGAGTGGACTAAAGCTGCCTAAGGTGGATAAGGGTGGACTAAAAGCAGAGAAGGGTAGACTAAAGCTGTCTAAAGCGAATAAGGGTGGACTAAAGCTGTCTAAAGTGAATAAGGGTGGACTAAAGCTGCCCACGGTGAACAAGGGTGGACTAAAGCTGCCCATGGTGGACAAGGGTGGACTAAAGCTGACCACGGTGGACAAGGGTGGACTAAAGTTGCCTAAGGTGGACAAGGGTGGACTAAAGCCGCCCACAGTGGACAAGGGTGGACTAAAGCTGCCCACGGTGGACAAGGGTGGACTAAAGTTGCCCACGGTGGACAAGGGTGGACTAAAGCTGCCCACGGTGGACAAGGGTGGACTAAAGTTGCCTAAGGTGGACAAGGGTGGACTAAAGCTGCCCACAGTGGACAAGGGTGGACTAAAGCTGCCTAAGGTGGATAAGGGTGGACTAAAGCTGACCACAGTGGACAAGGGTGGACTAAAGCTGCCCATGGTGGACAAGGGTGGACTAAAGTTGCCTAAGGTGGATAAGGGTGGACTAAAGCTGACCACAGTGGACAAGGGTGGACTAAAGCTGCCCATGGTGGACAAGGGCAGACTAAAGTTGCCTAAGGTGGATAAGGGTGGACTAAAGCTGCCTAAGGCATACAAGGACAGACTAAATTGCAATTTAAGCAAGTAACATCAGGTCGTCTGATTTATTTAGAGCTTGTATAGGACGTCGCAGTGGGGCGCCAGGCAGGCAGAAGCTTGGATGACAAGCAGATTTGGCTCAAATGTGAGAGAAGGGATGATAGGAAGGAGTGGATGCTCTTAACCTTGGAACATTTAAGTGAACAGGGTAAGACACCTGGAAGTACAACAAGAACAGAGAGGCTCTGTGATAAAATGCATAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034298654.1 True 1378 mRNA 0.50 3 11869215 11871010

Neighbor

gene id symbol gene type direction distance location
meox2b LOC108256791,LOC107724325,LOC107584352,LOC107702081,LOC107696195,LOC107709256,LOC107568803 coding upstream 28149 11832590 ~ 11841066 (+)
LOC113536236 LOC108257374,LOC107702070,LOC107584324,LOC107724274,LOC106588710 coding upstream 62794 11798056 ~ 11806421 (+)
sync sync coding upstream 95652 11768970 ~ 11773563 (+)
yars1 yars,LOC107687080,LOC107691530,LOC107724337,LOC107709269 coding upstream 153394 11706658 ~ 11715821 (+)
mfsd2ab mfsd2a,LOC107687081,LOC107724351,LOC107568806,LOC107584275,LOC107709268,LOC107691531 coding upstream 164098 11690437 ~ 11705117 (+)
si:ch211-57n23.4 si:ch211-57n23.4,LOC108256859,LOC108424704,LOC107593575,LOC107722127,LOC107731740,LOC107670070 coding downstream 76340 11947350 ~ 11968642 (+)
gatad2b gatad2b,LOC107593536,LOC107706168,LOC107731554,LOC107696601,LOC107591599 coding downstream 152884 12023894 ~ 12063869 (+)
tinagl1 tinagl1,LOC107706169,LOC106588893,LOC107669690,LOC107593537,LOC107731519 coding downstream 211067 12082077 ~ 12108662 (+)
si:ch211-13c6.2 LOC108257116 coding downstream 354751 12225761 ~ 12237465 (+)
nfyc nfyc,LOC106588897,LOC107696595,LOC107591605 coding downstream 370246 12241256 ~ 12268864 (+)
G342189 bzw2,LOC107709265,LOC107724358,LOC107691535,LOC107702135 non-coding upstream 71420 11787073 ~ 11797795 (+)
G342190 bzw2,LOC107724358,LOC107568798 non-coding upstream 84235 11782266 ~ 11784980 (+)
G342079 NA non-coding upstream 279990 11589018 ~ 11589225 (+)
G342067 NA non-coding upstream 285360 11583642 ~ 11583855 (+)
G341890 NA non-coding upstream 395236 11385036 ~ 11473979 (+)
G342333 NA non-coding downstream 404736 12275746 ~ 12275952 (+)
G342496 NA non-coding downstream 516774 12387784 ~ 12388775 (+)
G342538 psmb4,psb4,LOC107593590,LOC107696528 non-coding downstream 585697 12456707 ~ 12460218 (+)
G342546 NA non-coding downstream 603334 12474344 ~ 12476263 (+)
G342589 NA non-coding downstream 624032 12495042 ~ 12544734 (+)
sostdc1b LOC108257373 other upstream 53942 11810109 ~ 11815273 (+)
dlgap3 dlgap3 other upstream 395892 11314530 ~ 11473323 (+)
smim12 smim12,LOC107726140,LOC107664707,LOC107698988,LOC107563281 other upstream 574859 11292291 ~ 11294356 (+)
G341451 col8a2,LOC107565043,LOC107710560 other upstream 1387245 10474483 ~ 10481970 (+)
zgc:91910 zn706,LOC108425704,LOC107653862,LOC101168967,LOC107556412,LOC104931588,LOC107710523,LOC107670289 other upstream 1672213 10193747 ~ 10197002 (+)
fabp3 fabp3,LOC106570598,LOC108426441,LOC105892250,LOC107742844,LOC107669374 other downstream 820997 12692007 ~ 12695512 (+)
LOC113536228 nobox other downstream 914827 12785837 ~ 12792473 (+)
si:ch211-199g17.2 NA other downstream 1033613 12904623 ~ 12954725 (+)
G342718 klhl43,LOC108256975,LOC108426671,LOC107591641,LOC107742826,LOC107696549,LOC107589442,LOC107706211 other downstream 1206160 13077170 ~ 13081229 (+)
slc30a8 slc30a8,slc30a2,rprd1a,LOC108256818,LOC107754284,LOC107696534,LOC107696508,LOC106570487,LOC107654669,LOC107592974 other downstream 2334711 14205721 ~ 14231844 (+)

Expression


Co-expression Network