LOC113546245


Basic Information

Item Value
gene id LOC113546245
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 1379653 ~ 1387764 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034298680.1
TCTCCAGTAGCGCGCGGATGCGTTAGAAGTCAGAGAGCTGTTTCTCCTCTTGTCTTTTATTTCCTCTCCGCTTGTTTCCCGCACGTGTTTGGGTATGTTTTATTTGAGCGCACACTCAGTGCCGGGATAAAGTCTGACACTCACCACCATCAGGCTGGAGTTTATTTTAGAGTTTAAAAGCGCTGATGACGGAAAAAAGCGATGAGATGGAGAGTGAAGCGGAGCCGCGCGAGCTGCAGAGATCCCCGAGCACCTTATCCATCAACACAGGATCCAAGcagttGTTGAGGTTAAAGCGTTCCTTGGCGTTTATGCGCAGTAAGAGTGTGGAGAATTTCTTCCAGCGCTCCTACAGCGACGCCCGTCTGTCTTCTGATGTCATGGACGATGCCCCGCCCCTGTCCCCACCTCTGCTTCCAGGGTCACCGTTGCCTAGCGACAGCCCCAAACCCCCTTTAAGCCCCTCCCTCCTGGTGCTGCAGAAGCCCCGccctgcacaaacacactgcttCCTGGATCACGTGTTCCGCCGACCAACCAGCTGTCAGCTCTGCAAACACATCATCGTGGggAATTCTAAACAGGGTCTGCGCTGTAGGACGTGTAAAATCTCGGCTCATCTCTGGTGCACTGCAGAACTCTCACAGCAACCATGCCAAGGAAAAGTTGGCATGTTCAAGAGAAACTTCAGCACTCCTTCAATCACCAGCGACCAGTCAGCAAGTAAAGAGGCTCAAACTACACcagAGGCGAAAGTGCGAGTGGACCCGGTCTATGCTACACTACGCTATGGGAAGTCTTTGGCCCAGATGAGCCGGTCTAGTTtcgggagtgtgtgtgagtctccAACAGGCAGcctgGGTGATGGAGGGGATGAGAAGGACGAGGCGGAGATGGACATGAACGAACGGACAAATAACGACACGGAGAGCGCAGATCTCCCGAATCCAGAGACCTCGAAGACTGAAGCGGAGGATGCGATAAAGGTTCCCAGATTTCATCCGATCCACAGCTACGTGGCTCTCTACAAGTTTCTGCCACAAGAGCCGAACGATCTCGAGCtacgGCCTGGAGACAGAGTGCAGGTCACTGATGACTCTAATGAAGAGTGGTGGAAGgggaAGAGTGGAGACAGGGTGGGTTTCTTTCCTGCTAATTTCGTACAGCGAGTGCGTccaggtgagagtgtgtggaggGTCACGCAGGGTGTCCATGGCGACCGACAGATGGGTCACATGGCTGTTAAGGAAGATCAGATCTGCGTGGGGAAAAAGGAGGACAGTGACGGATATGTGAAGCTGTGCAGCGGGAAGAAGCGAGGCCTGGTCCCCACACACTCTCTGGAGGAAATTTaacacacgtcacacacacacacacacacacacacacacacacactccgtactgacccaataaataaataaaaccctgaCGCTAAAAATACTGCAATCTGGAATGACTGAGAAGCGAGTGCCTTCGCTCTGAGAGGATCAGCGACGAGGCTAAAGCGTCTGGTTTTGCCAAGTGGATTGTTGTGATATAATA
>XM_034298681.1
TCTCCAGTAGCGCGCGGATGCGTTAGAAGTCAGAGAGCTGTTTCTCCTCTTGTCTTTTATTTCCTCTCCGCTTGTTTCCCGCACGTGTTTGGGTATGTTTTATTTGAGCGCACACTCAGTGCCGGGATAAAGTCTGACACTCACCACCATCAGGCTGGAGTTTATTTTAGAGTTTAAAAGCGCTGATGACGGAAAAAAGCGATGAGATGGAGAGTGAAGCGGAGCCGCGCGAGCTGCAGAGATCCCCGAGCACCTTATCCATCAACACAGGATCCAAGttGTTGAGGTTAAAGCGTTCCTTGGCGTTTATGCGCAGTAAGAGTGTGGAGAATTTCTTCCAGCGCTCCTACAGCGACGCCCGTCTGTCTTCTGATGTCATGGACGATGCCCCGCCCCTGTCCCCACCTCTGCTTCCAGGGTCACCGTTGCCTAGCGACAGCCCCAAACCCCCTTTAAGCCCCTCCCTCCTGGTGCTGCAGAAGCCCCGccctgcacaaacacactgcttCCTGGATCACGTGTTCCGCCGACCAACCAGCTGTCAGCTCTGCAAACACATCATCGTGGggAATTCTAAACAGGGTCTGCGCTGTAGGACGTGTAAAATCTCGGCTCATCTCTGGTGCACTGCAGAACTCTCACAGCAACCATGCCAAGGAAAAGTTGGCATGTTCAAGAGAAACTTCAGCACTCCTTCAATCACCAGCGACCAGTCAGCAAGTAAAGAGGCTCAAACTACACcagAGGCGAAAGTGCGAGTGGACCCGGTCTATGCTACACTACGCTATGGGAAGTCTTTGGCCCAGATGAGCCGGTCTAGTTtcgggagtgtgtgtgagtctccAACAGGCAGcctgGGTGATGGAGGGGATGAGAAGGACGAGGCGGAGATGGACATGAACGAACGGACAAATAACGACACGGAGAGCGCAGATCTCCCGAATCCAGAGACCTCGAAGACTGAAGCGGAGGATGCGATAAAGGTTCCCAGATTTCATCCGATCCACAGCTACGTGGCTCTCTACAAGTTTCTGCCACAAGAGCCGAACGATCTCGAGCtacgGCCTGGAGACAGAGTGCAGGTCACTGATGACTCTAATGAAGAGTGGTGGAAGgggaAGAGTGGAGACAGGGTGGGTTTCTTTCCTGCTAATTTCGTACAGCGAGTGCGTccaggtgagagtgtgtggaggGTCACGCAGGGTGTCCATGGCGACCGACAGATGGGTCACATGGCTGTTAAGGAAGATCAGATCTGCGTGGGGAAAAAGGAGGACAGTGACGGATATGTGAAGCTGTGCAGCGGGAAGAAGCGAGGCCTGGTCCCCACACACTCTCTGGAGGAAATTTaacacacgtcacacacacacacacacacacacacacacacacactccgtactgacccaataaataaataaaaccctgaCGCTAAAAATACTGCAATCTGGAATGACTGAGAAGCGAGTGCCTTCGCTCTGAGAGGATCAGCGACGAGGCTAAAGCGTCTGGTTTTGCCAAGTGGATTGTTGTGATATAATA
>XM_034298682.1
TCTCCAGTAGCGCGCGGATGCGTTAGAAGTCAGAGAGCTGTTTCTCCTCTTGTCTTTTATTTCCTCTCCGCTTGTTTCCCGCACGTGTTTGGGTATGTTTTATTTGAGCGCACACTCAGTGCCGGGATAAAGTCTGACACTCACCACCATCAGGCTGGAGTTTATTTTAGAGTTTAAAAGCGCTGATGACGGAAAAAAGCGATGAGATGGAGAGTGAAGCGGAGCCGCGCGAGCTGCAGAGATCCCCGAGCACCTTATCCATCAACACAGGATCCAAGcagttGTTGAGGTTAAAGCGTTCCTTGGCGTTTATGCGCAGTAAGAGTGTGGAGAATTTCTTCCAGCGCTCCTACAGCGACGCCCGTCTGTCTTCTGATGTCATGGACGATGCCCCGCCCCTGTCCCCACCTCTGCTTCCAGGGTCACCGTTGCCTAGCGACAGCCCCAAACCCCCTTTAAGCCCCTCCCTCCTGGTGCTGCAGAAGCCCCGccctgcacaaacacactgcttCCTGGATCACGTGTTCCGCCGACCAACCAGCTGTCAGCTCTGCAAACACATCATCGTGGggAATTCTAAACAGGGTCTGCGCTGTAGGACGTGTAAAATCTCGGCTCATCTCTGGTGCACTGCAGAACTCTCACAGCAACCATGCCAAGGAAAAGTTGGCATGTTCAAGAGAAACTTCAGCACTCCTTCAATCACCAGCGACCAGTCAGCAAGTAAAGAGGCTCAAACTACACcagAGGCGAAAGTGCGAGTGGACCCGGTCTATGCTACACTACGCTATGGGAAGTCTTTGGCCCAGATGAGCCGGTCTAGTTtcgggagtgtgtgtgagtctccAACAGGCAGcctgGGTGATGGAGGGGATGAGAAGGACGAGGCGGAGATGGACATGAACGAACGGACAAATAACGACACGGAGAGCGATCTCCCGAATCCAGAGACCTCGAAGACTGAAGCGGAGGATGCGATAAAGGTTCCCAGATTTCATCCGATCCACAGCTACGTGGCTCTCTACAAGTTTCTGCCACAAGAGCCGAACGATCTCGAGCtacgGCCTGGAGACAGAGTGCAGGTCACTGATGACTCTAATGAAGAGTGGTGGAAGgggaAGAGTGGAGACAGGGTGGGTTTCTTTCCTGCTAATTTCGTACAGCGAGTGCGTccaggtgagagtgtgtggaggGTCACGCAGGGTGTCCATGGCGACCGACAGATGGGTCACATGGCTGTTAAGGAAGATCAGATCTGCGTGGGGAAAAAGGAGGACAGTGACGGATATGTGAAGCTGTGCAGCGGGAAGAAGCGAGGCCTGGTCCCCACACACTCTCTGGAGGAAATTTaacacacgtcacacacacacacacacacacacacacacacacactccgtactgacccaataaataaataaaaccctgaCGCTAAAAATACTGCAATCTGGAATGACTGAGAAGCGAGTGCCTTCGCTCTGAGAGGATCAGCGACGAGGCTAAAGCGTCTGGTTTTGCCAAGTGGATTGTTGTGATATAATA

Function

GO: NA

KEGG:

id description
K23712 STAC2; SH3 and cysteine-rich domain-containing protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034298680.1 True 1544 mRNA 0.53 11 1379653 1387764
XM_034298681.1 False 1541 mRNA 0.53 11 1379653 1387764
XM_034298682.1 False 1541 mRNA 0.53 11 1379653 1387764

Neighbor

gene id symbol gene type direction distance location
fbxl20 fbxl20,LOC107727724,LOC107665129,LOC107666314,LOC107549884,LOC107563017 coding upstream 3361 1358010 ~ 1376292 (+)
rab25a rab25a,LOC108257330,LOC108442629,LOC107669986,LOC107693307,LOC107753478 coding upstream 210365 1160733 ~ 1169288 (+)
gabpb2a LOC108257329 coding upstream 232566 1137077 ~ 1147087 (+)
LOC113529037 samd14 coding upstream 276574 1080994 ~ 1103079 (+)
LOC113529039 LOC108257110,LOC105013290 coding upstream 303107 1065767 ~ 1076546 (+)
LOC113546318 LOC108257321 coding downstream 18501 1406265 ~ 1426607 (+)
LOC113546243 LOC108257322 coding downstream 40221 1427985 ~ 1437422 (+)
LOC113546241 LOC108257282,LOC108257284,LOC108257326,LOC108257286,LOC108257289,LOC108257310,LOC108280069,LOC108257281 coding downstream 56340 1444104 ~ 1521750 (+)
LOC113546297 LOC108257310,LOC108257281,LOC108257282,LOC108257326,LOC108257289,LOC108257286,LOC108257284 coding downstream 83286 1471050 ~ 1491227 (+)
mindy1 fam63a,LOC107693308,LOC107559718,LOC107669987,LOC106569905 coding downstream 142750 1530514 ~ 1544531 (+)
G336364 NA non-coding upstream 22064 1357324 ~ 1357589 (+)
G336349 NA non-coding upstream 43746 1320815 ~ 1335907 (+)
G336337 NA non-coding upstream 71566 1307321 ~ 1308087 (+)
G336319 NA non-coding upstream 186479 1192687 ~ 1193174 (+)
G336313 NA non-coding upstream 191928 1183568 ~ 1187725 (+)
LOC117595828 NA non-coding downstream 106551 1494315 ~ 1499021 (+)
G336283 NA non-coding downstream 160901 1548665 ~ 1548892 (+)
G336391 NA non-coding downstream 161227 1548991 ~ 1549230 (+)
G336267 NA non-coding downstream 162091 1549855 ~ 1551200 (+)
G336406 NA non-coding downstream 192031 1579795 ~ 1580300 (+)
G336334 NA other upstream 44079 1269809 ~ 1335574 (+)
G336350 cdk12 other upstream 52146 1325816 ~ 1327507 (+)
mllt11 mllt11 other upstream 243529 1132955 ~ 1136124 (+)
G336213 NA other upstream 403332 973669 ~ 976321 (+)
G336172 NA other upstream 584958 794117 ~ 794695 (+)
G336433 parp10 other downstream 269553 1657317 ~ 1659459 (+)
polr2k NA other downstream 287276 1675040 ~ 1680352 (+)
G336822 ldlrad4 other downstream 488510 1876274 ~ 1945866 (+)
LOC117595892 LOC108257284,LOC108257282,LOC108257281,LOC108257289,LOC108257310,LOC108272567,LOC108261104,LOC108280065,LOC108272472,LOC108261175,LOC108279530,LOC100526730,LOC108257326,LOC108257286,LOC108261265 other downstream 798128 2185892 ~ 2351749 (+)
LOC113546301 LOC108257282,LOC108257281,LOC108257284,LOC108257326,LOC108257289,LOC108257286,LOC108257310 other downstream 914381 2302145 ~ 2340261 (+)

Expression


Co-expression Network