hdac5 (hdac5)


Basic Information

Item Value
gene id hdac5
gene name hdac5
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 2995277 ~ 3023586 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034298751.1
aggaggtggaggaggaggaggaaacgGAGGAGGTCCGGTGGACTTGCGTACGGATCCTCGTCTGAGCGCTCTGAGCGTGATGGACCCGGCGCTGAGGGAACAGCAGCTCCAGCATGAACTTCTCCTCCTCAAACAGCAGCAGGAGCTTCAGAAGCAGCTTCTGTTCGCCGAGTTCCAGAAACAGCACGAGGTGCTCACGCGGCAGCACGAGGTCCAGCTGCAGGAGCACCTCAAGcagcagcaggagttGTTGGCGGCGAAGCGTCAGCAGGAGTTGGAGCAGAAGAGGAAGCTGGAGCAGCAGAGGCACGAGGAGATGGAGAAACAGAGGCTGGAGCAGCAGCTCATCATGCTGCGGAACAAGGAGAAGGGCAAAGAGAgtgccATCGCCAGCACTGAGGTCAAACTGAAACTCCAGGAGTTCCTACTGAGCAAAAAGGAACCCCCCTCTGCCGGGCTCAACCATTCCTTCCCGCAGAAATGCTGgggtgctCACCACACGTCCATCGACCAGAGCTCCCCTCCACAGAGCAACACCCCCGGCACACCGCCTTCTTACAAACTGCCCCCTCTACTGGGATCCTACGAGGGCAAAGACGACTTCCCGCTTCGcaagacagcatcgGAGCCCAATCTGAAAGTTCGTTCACGGTTAAAACAGAAGGTTGCTGAGAGGAGGAGCAGTCCTCTACTCCGCCGTAAAGACGGCACAGTCATCAGCACCTTCAAGAAGAGAGCCATTGAGATCTcggtctCCTCCATGTGCAGCAGCGCCCCTGGCTCAGGCCCCAGCTCCCCCAACAGCTCCAACAGCGCCATCGCGGAGAACGGCTCCAGCGGCTCCGTCCCGAATATCCACGCCGAGcTGCGTTCCCTGCACCAGTCTCTGAACGCAGACGGAGCGGTGAGCCCGCTGAGTCTGTACACGTCTCCGTCTCTGCCCAACATCTCTCTGGGTCTGCCGGCTAACGCACACATCACCGCTCCTCAGAAGCTCGGGGTTCAGCCGGAGGCGGAGCGGCAGGTGCAGGGGGTGCGTCAGGGGGGCGTGTTGGGGAAGTTCGGGAGCGGCTCGTCCGTGTCCGTGTGTCTGGACTCGGAGCCTCCGTCAGCCCCCAACAGCCACAGCAGCCACAACTCCCTACTGCAGCACGTCCTCCTGCTGGAGCAGGCCCGGCAACAGAGTGCGCTGCtcgcagTGCCCATGTACGGCCAGTCGCCGTTGGTTACGGGTGAACGGGTGTCCAACAGCATGCGGACGGTCAGTAAACTGCCGCGGCACCGTCCTCTGGCACGCACGCAGTCGGCTCCGTTACCGCAGACCCCGCAGGCGCTGCAGCACCTCGTCATCCAACAGCAGCACCAACACTTCctggagaaacagaaacacTACCAGCTCAACAAGATCCTCTccaaaggggcggagcttccacGTCAACCCCCCACCCACCCggaagagacagaggaagagctTACCGAGACGGCGGAGATGCCGGAGGAGTGGGGGGAGGGGCCTGAGCGTGTGAGGGAGGGGCTAAGCAAAGAAAGCGAGAGCACAGAGAGCGACCtcgaggaagaggaggatgaagatgaagccATCGAGCTGAAGGAGTGCGATGAAGAGGGCGACCCCTACAGGCAGGGTGAATCATCGCCTCCTCTCGCCCCCAACCGTAACGAAAGTGAAGTGTTTCTCCGTCTGCAGTTCTCGGAGCAGCAGCACCTGCAGCAGCTGAACGTGTTCCAGGCGTCTCTGGCCATCACGGGAATGCCGCACAGGCCTCTGGGAAGAGCACAGTCGTCCCCCATCACCTCCAGTCTTAAAGCCACGCCCATGGCAGAATTACCCATCAAGCACCTCTTCACTACAGGTCTGGTGTACGACACACTCATGCTGAAGCACCAGTGCATGTGCGggaacacacacatccacccgGAGCACGCCGGACGCATCCAGAGCGTGTGGTCCAGGCTGCAGGAGACGGGACTGCTGGGCCGCTGTGAGaggatcCGGGGCAGGAAGGCGACCCTGGATGAGATTCAGACGGTGCACTCGGAGtatcacacactgctgtacgGCACCAGCCCCCTCAACCGCCAGAAACTCGACAGCAAGAAGCTCTTAGGTCCAATCAGTCAGAAAATGTACGCTGTACTGCCATGTGGAGGGATTGGGGTGGACAGTGATACGGTGTGGAACGAGATGCACTCTTCAGGAGCCGTGCGCATGGCCGTGGGCTGCGTCATCGAGCTCGCCTTTAAAGTGGCAGCTGGAGAGCTGAAGAACGGGTTCGCTGTCGTCCGTCCCCCGGGTCACCATGCAGAGGAATCCACGGCCATgggTTTCTGCTTTTTCAACTCGGTCGCTGTTACTGCCAAACTGCTCCAGCAGAAACTGGGCGTGGCCAAGATCCTCATCGTAGACTGGGACATTCACCATGGTAACGGGACCCAGCAGGCTTTTTACAACGACCCCAACGTGCTGTACATCTCCCTGCATCGCTATGACGACGGCAACTTCTTTCCTGGAAGCGGGGCTCCTGAAGAGgtggGTGTGGGTCCTGGTGTGGGTTTTAATGTGAACATAGCGTGGACAGGTGGAGTCGATCCTCCTATGGGTGATGTGGAGTATCTCACAGCTTTCAGGACGGTGGTGATGCCCATCGCTAATGAGTTCTCCCCTGACGTGGTGCTGGTGTCGGCCGGGTTCGACGCCGTTGAGGGACACCAGTCCCCGCTCGGAGGCTACAACGTCACCGCCAAATGTTTCGGCCACCTGACCAAGCAGCTGATGAAGTTGGCTGGTGGGCGTGTGGTCCTGGTGCTGGAGGGGGGTCACGACCTCACCGCCATCTGCGACGCCTCCGAGTCCTGTGTGGCCGCACTGCTTGGAGACGAGcTGGACCCACTGCCTCAGTCTGTGCTTCAGCAGAAACCGTGTCCAAAAGCATCGGCATCCCTCGAGAGAATCATCGAGATCCAGAgtaAACACTGGTCCTCAGTACAGAGATTAGCGCCCACAGTGTCTCAGTCTCTGCAGGACGCTCAGCGGCGAGAGAAGGACGAAGCGGACACGGTGACGGCCATGGCGTCTCTCACTGTGGACGCGGAGCACACGGCGTCCTCCTCACAGAGCAGCAGGCTGCTGAGGAGCCGATGGAGGAGGAGCCTGTGCTGTAGGAGGGAAAAACGTCCAGCACGACGCCGTGGCCACGTCCACACCTGCTCGGCAGCGACGCTCGCCTTTGAGTCACTCGTCCTTTCCTTCCACGCAGCTCTTTGATCGGTTCCTTCACTCGTTCTCCAGGTGCTCGATGGACGTACGCAGAACTCCGCTCCACTCCCacatgaggaggaggaagaggaggaggaagaggaccgGTGGGCCGCCGAACACACATCCGGGGAGCAGGACCCGC

Function

symbol description
hdac5 Predicted to enable NAD-dependent histone deacetylase activity (H3-K14 specific) and metal ion binding activity. Acts upstream of or within pronephros morphogenesis. Predicted to be located in cytoplasm and nucleus. Predicted to be part of histone deacetylase complex. Orthologous to human HDAC5 (histone deacetylase 5).

NR:

description
unnamed protein product

GO: NA

KEGG:

id description
K11406 HDAC4_5; histone deacetylase 4/5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034298751.1 True 3419 mRNA 0.60 28 2995277 3023586

Neighbor

gene id symbol gene type direction distance location
tanc2a tanc2,LOC107662401 coding upstream 105134 2845407 ~ 2890143 (+)
wnk4b wnk4b,LOC108257086,LOC107683678,LOC107582920 coding upstream 253683 2671258 ~ 2741594 (+)
arhgap27l arhgap27 coding upstream 334999 2607346 ~ 2660278 (+)
LOC117595863 NA coding upstream 427237 2566692 ~ 2568040 (+)
ifnphi3 LOC108256834 coding upstream 438448 2554657 ~ 2556829 (+)
lsm12a lsm12,LOC108256903,LOC107693683,LOC107562026,LOC107708984 coding downstream 8062 3031648 ~ 3039255 (+)
vwa3a vwa3a coding downstream 17782 3041368 ~ 3067972 (+)
sdr42e2 LOC108256832 coding downstream 48314 3071900 ~ 3091878 (+)
mfsd13al LOC108256898 coding downstream 88655 3112241 ~ 3127730 (+)
si:ch211-165g14.1 NA coding downstream 105118 3128704 ~ 3137973 (+)
LOC113546290 NA non-coding upstream 6 2926524 ~ 2995271 (+)
G337138 NA non-coding upstream 124368 2870683 ~ 2870909 (+)
G337136 NA non-coding upstream 132309 2862527 ~ 2862968 (+)
G337129 NA non-coding upstream 152402 2842664 ~ 2842875 (+)
G337128 NA non-coding upstream 152822 2841356 ~ 2842455 (+)
G337195 NA non-coding downstream 10258 3033844 ~ 3034394 (+)
G337197 LOC108256899 non-coding downstream 72411 3095997 ~ 3102191 (+)
G337233 NA non-coding downstream 188925 3212511 ~ 3299308 (+)
G337304 NA non-coding downstream 466267 3489853 ~ 3491029 (+)
G337273 NA non-coding downstream 687116 3710702 ~ 3712919 (+)
LOC113546300 LOC108280069,LOC108261210,LOC108257281,LOC108257282,LOC108257284,LOC108257326,LOC108257286,LOC108257289 other upstream 602740 2358116 ~ 2392537 (+)
LOC117595892 LOC108257284,LOC108257282,LOC108257281,LOC108257289,LOC108257310,LOC108272567,LOC108261104,LOC108280065,LOC108272472,LOC108261175,LOC108279530,LOC100526730,LOC108257326,LOC108257286,LOC108261265 other upstream 643528 2185892 ~ 2351749 (+)
LOC113546301 LOC108257282,LOC108257281,LOC108257284,LOC108257326,LOC108257289,LOC108257286,LOC108257310 other upstream 655016 2302145 ~ 2340261 (+)
G336822 ldlrad4 other upstream 1049411 1876274 ~ 1945866 (+)
polr2k NA other upstream 1314925 1675040 ~ 1680352 (+)
rsad1 rsad1 other downstream 1284336 4307922 ~ 4325036 (+)
G338163 NA other downstream 1328936 4352522 ~ 4355029 (+)
pbx4 pbx4,LOC107757367,LOC107672472,LOC107670485,LOC103392870,LOC102788435 other downstream 1592738 4616324 ~ 4668256 (+)
brd4 LOC108257120,LOC108429657 other downstream 1674671 4698257 ~ 4752669 (+)
LOC113546199 pet100,LOC107672445,LOC107563330,LOC107587949 other downstream 1734228 4757814 ~ 4762602 (+)

Expression


Co-expression Network