lsm12a (lsm12,LOC108256903,LOC107693683,LOC107562026,LOC107708984)


Basic Information

Item Value
gene id lsm12a
gene name lsm12,LOC108256903,LOC107693683,LOC107562026,LOC107708984
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 3031648 ~ 3039255 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034298756.1
GCTGACGTAAGCACGTACGCGCTCCGTCCTGCGCTCCGGCTGCTTGCGTTTGGCGGAGAAGATGGCGGCTCCGGGACCGGGGGAGTATTTCAGCATCGGGAGCCATGTCGCCTGCCTCACCTGCCTGGGACAGCGCTTACAGGGAGAAGTCGTCGCTTTCGACTATCAGACCAAGATGCTGACTTTGAAATGCCCCTCATCCAGCGGGAAGTCCCACCTTAACGACGTCATCCTGGTTAACTTAGCCTACGTGTCCAAAGTGGACACCATCAACGAGCGCAGCGGGACTCCGCCCCCTTTAGCGTCTCTCAATTTCAGCAAGCTCGCCAGCAGAGCTCGGGCGGAAAAGGAAGACAAGTTGTCGCAGGCGTATGCGATCAGCGCCGGAGTCTCGGTGGAGGGCCAGCAGCTGTTCCAGACCATTCATAAAACCATCAAAGACTGCAAGTGGCAGGAGAAGAACATCGTGGTGATGGATGATGTCGTCATCACGCCGCCGTACCGAGCAGACAACTGCAGAGGCAAAGAGGGCAGTGCGCTAGGACACGTACGCAAAATTgtggagAAACACTTCCGTGACATGGACCAGAAATCTGTGCAGCGCTCACAAGCACAGCAAACACAGAAGGACTCGGTCTTGTCGGCGTGAGCGCCGCCAAACgctagattattattttttgtctgtttgttttggggttttgttttgtaatcTGCCTCGAGGCTGAGGTCGAGGTAACCGCCTCCTTCGTCCCCACCGGCACGAGTGTTCTACACGTCTGCACGgagaacaaaaaacagaaaaacagccaAAACGACAGATTAGCAGAATtagttttagaaatatttaaattaacaaCAGAGCGTCTTTTCTCCCAGCATcccttttcttcctctcctgAAATAAACGTCCTACCCTCACAtatttgccaagaagaatgaACATCAGGTGAACACCAGGCTCTTGGttcttttatgctttttttgttttgttttgttttgttttgtttgaagtGTCCGAACAAAATCTGACTTGAAAGGTAttggagaaaagaaggaaagactTCGCAGTTACCGGTgctgaaagtgtgtttttttattattattattattattattattattattattattatgatgatgatgtaagagGAAACTGAAGTGACGCGAGCGATGTTGAGCATTTTTTCAGCCCTCCTCCGATTTATCTTGCATGGAAATTAAAAATCCAGTGCAGAGGATGTGAAGTAGTTCACTCCAGCCGAGAGCTGTCGATTCACTGCAACAGTGTTTTTGCCGCGCGAGCTTTGGTGTGAACGAGTCAAGATGGAGTTTTGTGGCAACGGATACTGAATCATGCCTGCAGTTTATTCACATGCTTTCGCATACGTTCTGTAGGTTAGATATACAGTCCGAGTGGCCACGAGCTACTtgtgaaaccatggcaaccggCAGTAAACTAAAGGTGGCACCGCCCACTAGTGGTCAACGTAGAGTGACTTCAGCGATGATAAACAGACGGGTAAACACTTTAGAGCCGCAGATGGTGCAGGAAGTGATTTGCTTTGCCGCAGTGTGAATGTACCACCTGACTGTGGTGTCCAATCAGAGCCCAGTTTCTGAAACTCATCATTATCTTAAAGGAAATCTTCACCCTGAAACAAGCTTATACTGAAATgcctgtgatgtgtttagtgattctggggctaatttgttggttggtgctgtattatcattattcctgtgagacgTTAGCGGTTGCGTGTTACTCTGATGTCACAGAATGATGATGTCATAGCTAGCGCAATTAAAATGacgtttaataggagaaaaaatatCCAAGATCTCAAACAGAAGGGATAACGGTCAGGTTTCGCAGTTACCTCCTAAATtcttattaatgagaaatccagtgtagaaatAGTGGAGATGTTGATGAGAATGCTGGACTCAGAGTCCCAGAATGCAAAGCAGCTACACGACTCGTCTCCTCTAGTTTGCGAAGCTTTGGAAGgcgatctgtttgagcagagtgtacagaggaggaagtgagagagctggacaaacTAAAGCACTAAAGTGCCGccgcatcgctctctttaggtagagatgattCGACGGCTAAATCCTGCTACATCGTTATCAGCAGGCAGTCCAAtggaattgtgggtaatttagGAAAACCATTAATGAGAGTGAAAATAGAGCATCACATCCATGATAGACGTTTGAACTAAAAACCCAGataacatgttaattataaagattagcTTGAAAgtcgttcagggtggatttttccttttataccatGTTTGTGTTGTGACTGTTTTGGGAAACTCCGCCCTGATCCGCAGCGAGACGTTGTGCTTGATTCCACTTGCATTATGGAATCTGTGTGGATCAGATTGGACGCTCAAATGTTAGCCTAGATTTTCTCATAAAACTCGCCTAaaccaaccaatcaggagcACCGAGTCCTTAGCACAGATGTGTCAGGACTTTGTGTTGGCGTGTCCACACCTGGTTggttcgtgtttttttttttttttaatatatcagGTGCTGGACACGAGTCATTTCCtcatctcagaaaaaaaaatctctgaatgCTTGTAACTTGGCACAGAATTTCTGTCCTTGTGTTTGGCTGCTCATGTGTCTAAACGAAGGAAGCGAAACTCTTCGATAAGTTTACAGTGTATGTGAAAACCCCAAGCTGGCAGTGGACAAGGCTGGTGGAGAAAAGCTTAACAGCGTGAGGAGCCTCCTCCATCTTGATGAGAGCTcgtattactgttattattattattattattaaacacctCATTGTGAAGTGAACACCGTGTCTCTTCACTCCTGTACAGCAGAAAGCCTCAGCGATGAATTTTAACAGCAGC

Function

symbol description
lsm12 Orthologous to human LSM12 (LSM12 homolog).

NR:

description
PREDICTED: protein LSM12 homolog B

GO: NA

KEGG:

id description
K23643 LSM12; protein LSM12

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034298756.1 True 2894 mRNA 0.45 5 3031648 3039255

Neighbor

gene id symbol gene type direction distance location
hdac5 hdac5 coding upstream 8062 2995277 ~ 3023586 (+)
tanc2a tanc2,LOC107662401 coding upstream 141505 2845407 ~ 2890143 (+)
wnk4b wnk4b,LOC108257086,LOC107683678,LOC107582920 coding upstream 290054 2671258 ~ 2741594 (+)
arhgap27l arhgap27 coding upstream 371370 2607346 ~ 2660278 (+)
LOC117595863 NA coding upstream 463608 2566692 ~ 2568040 (+)
vwa3a vwa3a coding downstream 2113 3041368 ~ 3067972 (+)
sdr42e2 LOC108256832 coding downstream 32645 3071900 ~ 3091878 (+)
mfsd13al LOC108256898 coding downstream 72986 3112241 ~ 3127730 (+)
si:ch211-165g14.1 NA coding downstream 89449 3128704 ~ 3137973 (+)
znf750 znf750 coding downstream 229683 3268938 ~ 3272927 (+)
G337194 NA non-coding upstream 12238 3019110 ~ 3019410 (+)
LOC113546290 NA non-coding upstream 36377 2926524 ~ 2995271 (+)
G337138 NA non-coding upstream 160739 2870683 ~ 2870909 (+)
G337136 NA non-coding upstream 168680 2862527 ~ 2862968 (+)
G337129 NA non-coding upstream 188773 2842664 ~ 2842875 (+)
G337197 LOC108256899 non-coding downstream 56742 3095997 ~ 3102191 (+)
G337233 NA non-coding downstream 173256 3212511 ~ 3299308 (+)
G337304 NA non-coding downstream 450598 3489853 ~ 3491029 (+)
G337273 NA non-coding downstream 671447 3710702 ~ 3712919 (+)
G337374 NA non-coding downstream 703882 3743137 ~ 3745935 (+)
LOC113546300 LOC108280069,LOC108261210,LOC108257281,LOC108257282,LOC108257284,LOC108257326,LOC108257286,LOC108257289 other upstream 639111 2358116 ~ 2392537 (+)
LOC117595892 LOC108257284,LOC108257282,LOC108257281,LOC108257289,LOC108257310,LOC108272567,LOC108261104,LOC108280065,LOC108272472,LOC108261175,LOC108279530,LOC100526730,LOC108257326,LOC108257286,LOC108261265 other upstream 679899 2185892 ~ 2351749 (+)
LOC113546301 LOC108257282,LOC108257281,LOC108257284,LOC108257326,LOC108257289,LOC108257286,LOC108257310 other upstream 691387 2302145 ~ 2340261 (+)
G336822 ldlrad4 other upstream 1085782 1876274 ~ 1945866 (+)
polr2k NA other upstream 1351296 1675040 ~ 1680352 (+)
rsad1 rsad1 other downstream 1268667 4307922 ~ 4325036 (+)
G338163 NA other downstream 1313267 4352522 ~ 4355029 (+)
pbx4 pbx4,LOC107757367,LOC107672472,LOC107670485,LOC103392870,LOC102788435 other downstream 1577069 4616324 ~ 4668256 (+)
brd4 LOC108257120,LOC108429657 other downstream 1659002 4698257 ~ 4752669 (+)
LOC113546199 pet100,LOC107672445,LOC107563330,LOC107587949 other downstream 1718559 4757814 ~ 4762602 (+)

Expression


Co-expression Network