LOC113536203


Basic Information

Item Value
gene id LOC113536203
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 5975872 ~ 5981732 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_003403669.2
GTGGGATGTTAAAGACAAGCAAGAACATAGATCACATCTTTTATCtttaattgaagaaaaaaaaacagatgaaagaCTGAAGACTTTATGAACTCTCGGAGTTTACGGTGTCCCACAGCCAGTATGATGGGGGAGAAGGCAATAAAGGCACTGTTGGAGAAACGTGCAAGAACCAGCAGtgctccAATTCATGCCTCTCCCAGCTGAATCATTTATCACAACTGCTCCTCATCAGTTCACCAGTCTGCAGCACATATAAACCCCAGTTCTTCAAACACTCATCACTAGATTGTTCCACCTTCCAGTGCAATAACACGGCAGGCCTTCTTGTGTCTGTTTTCCATGTTTTGCTGTGAGCTTACTCTGTTGTATCCCTGAGTGTATGCCAGGATCACATCTCCCCCAGTCTATTCGTCTGCTCACTTCCTGCCTTGACCATGCTCCCTTCCCACACTCTCCTACCCTAACCTCCAATAAAACATG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_003403669.2 True 483 lncRNA 0.45 3 5975872 5981732

Neighbor

gene id symbol gene type direction distance location
slc39a4 slc39a4 coding upstream 31648 5927706 ~ 5944224 (+)
zgc:63863 LOC108256764,LOC108429636,LOC107694745,LOC107566628 coding upstream 249477 5704671 ~ 5726395 (+)
cfap20 cfap20,cp080 coding upstream 301681 5669692 ~ 5674191 (+)
oxsm oxsm,LOC107655122,LOC107694752,LOC107557465,LOC107566624 coding upstream 306856 5665172 ~ 5669016 (+)
LOC113535991 NA coding upstream 317673 5632327 ~ 5658199 (+)
LOC113536255 NA coding downstream 118814 6100546 ~ 6109043 (+)
LOC113536325 NA coding downstream 130369 6112101 ~ 6116707 (+)
cdca7b cdca7l coding downstream 206437 6188169 ~ 6197615 (+)
sp8a LOC108257401 coding downstream 291215 6272947 ~ 6275012 (+)
polr1f twistnb coding downstream 363739 6345471 ~ 6350729 (+)
G338961 NA non-coding upstream 120442 5854658 ~ 5855430 (+)
G338842 NA non-coding upstream 247566 5727178 ~ 5728306 (+)
G338814 dnmt1 non-coding upstream 449263 5525040 ~ 5526609 (+)
G338799 NA non-coding upstream 543608 5431849 ~ 5432264 (+)
G338683 NA non-coding upstream 583680 5387988 ~ 5392192 (+)
G339055 NA non-coding downstream 6079 5987811 ~ 5988492 (+)
G339126 NA non-coding downstream 135017 6116749 ~ 6128284 (+)
G339159 LOC108256777 non-coding downstream 192589 6174321 ~ 6175597 (+)
G339167 NA non-coding downstream 218761 6200493 ~ 6201623 (+)
LOC117595885 NA non-coding downstream 331753 6313485 ~ 6319774 (+)
stxbp2 stxbp2,LOC107670524,LOC107587946,LOC107711254,LOC107757364 other upstream 1195486 4761313 ~ 4780386 (+)
LOC113546199 pet100,LOC107672445,LOC107563330,LOC107587949 other upstream 1213270 4757814 ~ 4762602 (+)
brd4 LOC108257120,LOC108429657 other upstream 1223203 4698257 ~ 4752669 (+)
pbx4 pbx4,LOC107757367,LOC107672472,LOC107670485,LOC103392870,LOC102788435 other upstream 1307616 4616324 ~ 4668256 (+)
G338163 NA other upstream 1620843 4352522 ~ 4355029 (+)
LOC113535938 tmem196,LOC106588729,LOC107667578,LOC107568813,LOC107755951,LOC107571147,LOC107655099 other downstream 352257 6333989 ~ 6343909 (+)
mturn mturn,LOC107559763,LOC107572558 other downstream 622873 6604605 ~ 6616023 (+)
G339324 NA other downstream 729283 6711015 ~ 6717146 (+)
LOC113536074 LOC108257189,LOC108257413 other downstream 2258965 8240697 ~ 8271499 (+)
G340208 LOC108256789 other downstream 2301228 8282960 ~ 8285204 (+)

Expression


Co-expression Network