LOC117595828


Basic Information

Item Value
gene id LOC117595828
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 1494315 ~ 1499021 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004577008.1
CAAAGATCAAGAAACCGTGAGATTAATGCCAACACAACAAGGATTGTTGAGTAAAGCAGAAGAGATCAGGCCTGCTCAAACACAGCTCTGTCCATGACCAATAACGTTTCTGTACTAATGGTGAAAGATGGATCACTCGAATCCTGACCAACCTGATGGATCTCCACAATTAAAAAAGAGTGAAACCCAGGGAAAGATATCAGACTGTGCAGGACCCAGCAGTGCCTCCATGAACAGTGATGTGTCTACAGATCCTCCaccaggattaaaaaaatgaagt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004577008.1 True 280 lncRNA 0.43 3 1494315 1499021

Neighbor

gene id symbol gene type direction distance location
LOC113546297 LOC108257310,LOC108257281,LOC108257282,LOC108257326,LOC108257289,LOC108257286,LOC108257284 coding upstream 3088 1471050 ~ 1491227 (+)
LOC113546243 LOC108257322 coding upstream 56893 1427985 ~ 1437422 (+)
LOC113546318 LOC108257321 coding upstream 67708 1406265 ~ 1426607 (+)
LOC113546245 NA coding upstream 106551 1379653 ~ 1387764 (+)
fbxl20 fbxl20,LOC107727724,LOC107665129,LOC107666314,LOC107549884,LOC107563017 coding upstream 118023 1358010 ~ 1376292 (+)
mindy1 fam63a,LOC107693308,LOC107559718,LOC107669987,LOC106569905 coding downstream 31493 1530514 ~ 1544531 (+)
mrpl24 mrpl24,LOC107559719,LOC107693309,LOC107669969 coding downstream 75316 1574337 ~ 1578156 (+)
prcc prcc coding downstream 79977 1578998 ~ 1586462 (+)
lix1l lix1l,LOC107693252 coding downstream 97826 1596847 ~ 1608854 (+)
adck5 adck5 coding downstream 111593 1610614 ~ 1629996 (+)
G336364 NA non-coding upstream 136726 1357324 ~ 1357589 (+)
G336349 NA non-coding upstream 158408 1320815 ~ 1335907 (+)
G336337 NA non-coding upstream 186228 1307321 ~ 1308087 (+)
G336319 NA non-coding upstream 301141 1192687 ~ 1193174 (+)
G336313 NA non-coding upstream 306590 1183568 ~ 1187725 (+)
G336283 NA non-coding downstream 49644 1548665 ~ 1548892 (+)
G336391 NA non-coding downstream 49970 1548991 ~ 1549230 (+)
G336267 NA non-coding downstream 50834 1549855 ~ 1551200 (+)
G336406 NA non-coding downstream 80774 1579795 ~ 1580300 (+)
G336275 NA non-coding downstream 87226 1586247 ~ 1588294 (+)
G336334 NA other upstream 158741 1269809 ~ 1335574 (+)
G336350 cdk12 other upstream 166808 1325816 ~ 1327507 (+)
mllt11 mllt11 other upstream 358191 1132955 ~ 1136124 (+)
G336213 NA other upstream 517994 973669 ~ 976321 (+)
G336172 NA other upstream 699620 794117 ~ 794695 (+)
G336433 parp10 other downstream 158296 1657317 ~ 1659459 (+)
polr2k NA other downstream 176019 1675040 ~ 1680352 (+)
G336822 ldlrad4 other downstream 377253 1876274 ~ 1945866 (+)
LOC117595892 LOC108257284,LOC108257282,LOC108257281,LOC108257289,LOC108257310,LOC108272567,LOC108261104,LOC108280065,LOC108272472,LOC108261175,LOC108279530,LOC100526730,LOC108257326,LOC108257286,LOC108261265 other downstream 686871 2185892 ~ 2351749 (+)
LOC113546301 LOC108257282,LOC108257281,LOC108257284,LOC108257326,LOC108257289,LOC108257286,LOC108257310 other downstream 803124 2302145 ~ 2340261 (+)

Expression


Co-expression Network