LOC117595845


Basic Information

Item Value
gene id LOC117595845
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 10446328 ~ 10447955 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004577048.1
AAAAGTGTTGGTCGTGGAACATTCCCTGAACCCTgagtactgaatactgaatactgaagagCATAAAGACACAAGCAGGAGAGCTAAATCAGGCTTAACAATGACTACAACCTGTACAgaaggcacaaacacacaccttggAAAGAGCAGATGAAACGTATTCCCTGTGagggtgccattatttttgATACAAGCAGGAGAGGATAAATCAGCCTTAACACAGACAACAAGCTATACAAAAGACATACATGCTACTTTGGAGAtagtggacagacagacagctcactaacagcactgttgaatctGGTTgctcaggaggtgttgattagttttctgtaacagcacctCTGATAGTAGTTCAGCCTattctgCAATACTGGCACCTCCATGATTAATATCTGGAGAAGCCTCCCATGTAGGGAACAACAGCAGTCATTTCTGACAAGGTTGGTGCATGTGGTCTGCATTCATATACAGAGGATATGCCACTGCAACACACCGATTGTGTCTCTCTGCAATGTGTTTGGTGTCAGTATTATAGTTTACAGGGCAATCAGATGTATTTTCTTGTATGCAGTTCTTGTTTTGTTCTAAACATATCAACTGTGAGCATAG
>XR_004577049.1
AAAAGTGTTGGTCGTGGAACATTCCCTGAACCCTgagtactgaatactgaatactgaagagCATAAAGACACAAGCAGGAGAGCTAAATCAGGCTTAACAATGACTACAACCTGTACAgaaggcacaaacacacaccttggAAAGAGCAGATGAAACGGAGAGGATAAATCAGCCTTAACACAGACAACAAGCTATACAAAAGACATACATGCTACTTTGGAGAtagtggacagacagacagctcactaacagcactgttgaatctGGTTgctcaggaggtgttgattagttttctgtaacagcacctCTGATAGTAGTTCAGCCTattctgCAATACTGGCACCTCCATGATTAATATCTGGAGAAGCCTCCCATGTAGGGAACAACAGCAGTCATTTCTGACAAGGTTGGTGCATGTGGTCTGCATTCATATACAGAGGATATGCCACTGCAACACACCGATTGTGTCTCTCTGCAATGTGTTTGGTGTCAGTATTATAGTTTACAGGGCAATCAGATGTATTTTCTTGTATGCAGTTCTTGTTTTGTTCTAAACATATCAACTGTGAGCATAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004577048.1 True 615 lncRNA 0.42 4 10446328 10447955
XR_004577049.1 False 576 lncRNA 0.42 4 10446328 10447955

Neighbor

gene id symbol gene type direction distance location
wdyhv1 wdyhv1 coding upstream 256012 10187693 ~ 10190316 (+)
ccn4a wisp1,LOC108425715,LOC107670277,LOC107724346 coding upstream 292137 10147649 ~ 10154191 (+)
abitram fam206a,LOC107710376,LOC107556369,LOC107556344 coding upstream 398441 10042424 ~ 10047887 (+)
gabbr2 gabbr2,LOC107670291,LOC107724329,LOC107710365 coding upstream 439796 9822703 ~ 10006532 (+)
LOC113536234 NA coding upstream 640224 9804036 ~ 9806104 (+)
angpt2b LOC108256759,LOC108425532 coding downstream 149461 10597416 ~ 10620173 (+)
LOC113536281 NA coding downstream 609150 11057105 ~ 11078437 (+)
cx30.9 NA coding downstream 827871 11275826 ~ 11283228 (+)
pef1 pef1,LOC107664714,LOC107726139,LOC107712637,LOC107698987 coding downstream 836578 11284533 ~ 11291582 (+)
fam49al fam49a,LOC108257369,LOC103035846,LOC107691525,LOC106589091,LOC105892259,LOC105006285,LOC101166565 coding downstream 1093548 11541503 ~ 11569943 (+)
G341469 NA non-coding upstream 46461 10398953 ~ 10399867 (+)
G341468 NA non-coding upstream 47919 10398210 ~ 10398409 (+)
G341038 NA non-coding upstream 715359 9728928 ~ 9730969 (+)
G340967 NA non-coding upstream 777100 9627788 ~ 9669228 (+)
LOC113536134 NA non-coding upstream 880802 9557697 ~ 9565526 (+)
LOC113536353 NA non-coding downstream 1481 10449436 ~ 10454792 (+)
G341445 NA non-coding downstream 2510 10450465 ~ 10451562 (+)
G341894 NA non-coding downstream 870800 11318755 ~ 11319077 (+)
G341890 NA non-coding downstream 937081 11385036 ~ 11473979 (+)
G342067 NA non-coding downstream 1135687 11583642 ~ 11583855 (+)
zgc:91910 zn706,LOC108425704,LOC107653862,LOC101168967,LOC107556412,LOC104931588,LOC107710523,LOC107670289 other upstream 249326 10193747 ~ 10197002 (+)
bet1 bet1,LOC107669829,LOC107722155 other upstream 1216690 9224604 ~ 9229638 (+)
sgce sgce,LOC107722147,LOC107669779,LOC107665667,LOC107731676 other upstream 1312149 9119014 ~ 9134179 (+)
sem1 NA other upstream 1530482 8912928 ~ 8915846 (+)
G340208 LOC108256789 other upstream 2161124 8282960 ~ 8285204 (+)
G341451 col8a2,LOC107565043,LOC107710560 other downstream 26528 10474483 ~ 10481970 (+)
smim12 smim12,LOC107726140,LOC107664707,LOC107698988,LOC107563281 other downstream 844336 11292291 ~ 11294356 (+)
dlgap3 dlgap3 other downstream 866575 11314530 ~ 11473323 (+)
sostdc1b LOC108257373 other downstream 1362154 11810109 ~ 11815273 (+)
fabp3 fabp3,LOC106570598,LOC108426441,LOC105892250,LOC107742844,LOC107669374 other downstream 2244052 12692007 ~ 12695512 (+)

Expression


Co-expression Network