LOC117595846


Basic Information

Item Value
gene id LOC117595846
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 5377206 ~ 5386152 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004577050.1
CGCTCCAGCAGACGCAGAACTAGAAGCTTAGGATGTGGCATATAAATGCGAGCTGCCTCGACTGGATCCTCCCGATACAGCGATTAATAGTGACACACGGAGCTCGATACCATCATCAGGTTATATTCCAGAAGAGCAGGAGTAACAGAGCAACAGACACCAACAAACACATTCACAGTGAGGAGATGAACAGGAGCAACATTCTGAACATCACACTGGAGCTCATACTGGCTGCCTTCAATCATCGGCCCTGTGTGACGCACAGTGCTGATGGAAACCCGGTCTGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004577050.1 True 287 lncRNA 0.50 3 5377206 5386152

Neighbor

gene id symbol gene type direction distance location
olfm2a olfm2,olfm2a,LOC107563315 coding upstream 122943 5143226 ~ 5254263 (+)
col5a3a col5a3,LOC107587984,LOC107757338 coding upstream 280933 5014830 ~ 5096273 (+)
LOC113546287 rdh8,LOC108257005,LOC108429652,LOC105905727,LOC107563320 coding upstream 489861 4877395 ~ 4887345 (+)
camsap3 camsap3 coding upstream 536684 4798341 ~ 4840522 (+)
xab2 xab2,LOC102796593 coding upstream 582648 4781291 ~ 4794558 (+)
ppan ppan,LOC107711268,LOC107672501,LOC107670430,LOC103392573,LOC105905764 coding downstream 60841 5446993 ~ 5455237 (+)
LOC113536209 LOC108257204,LOC108257205,LOC108257203,LOC108257207,LOC108257206,LOC108256855,LOC108257209,LOC108261875,LOC108261620 coding downstream 76903 5463055 ~ 5467361 (+)
LOC113536250 LOC108257204,LOC108257207,LOC108257205,LOC108257203,LOC108257206,LOC108257209,LOC108256855,LOC108261875,LOC108261620 coding downstream 84410 5470562 ~ 5472111 (+)
LOC113536275 LOC108257203,LOC108257204,LOC108256855,LOC108257206,LOC108257209,LOC108257205,LOC108261875,LOC108257208 coding downstream 87790 5473942 ~ 5511202 (+)
LOC113535910 LOC108257332,LOC108257205,LOC108261620 coding downstream 116082 5502234 ~ 5511202 (+)
G338658 NA non-coding upstream 135622 5241325 ~ 5241584 (+)
G338246 NA non-coding upstream 646101 4718197 ~ 4731105 (+)
G338252 NA non-coding upstream 697581 4677517 ~ 4679625 (+)
G338164 NA non-coding upstream 1006995 4339204 ~ 4370211 (+)
G338147 NA non-coding upstream 1050711 4326052 ~ 4326495 (+)
G338683 NA non-coding downstream 1836 5387988 ~ 5392192 (+)
G338799 NA non-coding downstream 45697 5431849 ~ 5432264 (+)
G338814 dnmt1 non-coding downstream 138888 5525040 ~ 5526609 (+)
G338842 NA non-coding downstream 341026 5727178 ~ 5728306 (+)
G338961 NA non-coding downstream 468506 5854658 ~ 5855430 (+)
stxbp2 stxbp2,LOC107670524,LOC107587946,LOC107711254,LOC107757364 other upstream 596820 4761313 ~ 4780386 (+)
LOC113546199 pet100,LOC107672445,LOC107563330,LOC107587949 other upstream 614604 4757814 ~ 4762602 (+)
brd4 LOC108257120,LOC108429657 other upstream 624537 4698257 ~ 4752669 (+)
pbx4 pbx4,LOC107757367,LOC107672472,LOC107670485,LOC103392870,LOC102788435 other upstream 708950 4616324 ~ 4668256 (+)
G338163 NA other upstream 1022177 4352522 ~ 4355029 (+)
LOC113535938 tmem196,LOC106588729,LOC107667578,LOC107568813,LOC107755951,LOC107571147,LOC107655099 other downstream 947837 6333989 ~ 6343909 (+)
mturn mturn,LOC107559763,LOC107572558 other downstream 1218453 6604605 ~ 6616023 (+)
G339324 NA other downstream 1324863 6711015 ~ 6717146 (+)
LOC113536074 LOC108257189,LOC108257413 other downstream 2854545 8240697 ~ 8271499 (+)
G340208 LOC108256789 other downstream 2896808 8282960 ~ 8285204 (+)

Expression


Co-expression Network