LOC117595890


Basic Information

Item Value
gene id LOC117595890
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 8875957 ~ 8891060 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004577073.1
AGATGCCTTTCAGTATTAAAAGTGGTAGAAAATTACAGGTAATTATCTTTGACGGTAAAAACGCTGTAATCAGCGGGCTACATCAAAAATTACCCTAATTATGTCTGCATTTATgagaataggaaaaaaaaccttcacttGGATAAAACCCATAAATTGTCCCAAATATCTCCTTCATATTGAACGAGACTGCAGCTGGGTGCTTTGTTCGGGATCGATCCTGTGGCGAATGGCATTCAGCGTTTCGCACAtcaagacagggagagagggggaaaaacatTTTGTCAATACTGTAATGATTGAGACAGAGTAGATGGACAAGATGCGGTTCTGTATTATAGGAAAAACTCGATGAGAGACGACCAACTATggGAGCCTGATTTGAGATGTTCTTCTGTTGTTGATTGCTCAACATTGAGAGATATTTCAAGGGCTCAGAGAGCTGACTGAGGAGAAGTCTTTTGAAAGAGCAAAGCCCGATGACCAGGCGAAGGAAATCAAGGCTCCCTAGTGTGTCGCCTTAGCAACGGGGGAAAATTAGCATTGACTTCCGAGCAAGCCTACAAAACTAGGCTTCAGGGTATTTTTTACATCTTGAAAAGTGACAATCAAAGAAGATCTAAAGACACGCTTCCACTTCCATTTATATTGAaatcagtttctttcttttttccgcTGCCCGAACACAAAAAGTCttaatgtatgtatttttgctcattttactGTGTTGTGCAGTTTCCCCGCAATGCCCCCTTGCTCATGTTTGCCTCCCGCCGTGGCAAACAGAACACGTCTATGATAGTGAATGCATTTCAGAGTACTTCCCAACATGAACTAGAGCTGACACTGGCTTCCTCATTCGCAGGCATGGAATTCAGCTCTCATGATTGCCAACACGCTTAATGATAGCGTCTCCTAGAGTCACAGAAGTATCACACTGAtgcaccatctctctctctctccctctcttcatcACATTGCAGGGAATTCAGCGGCGTCCAAACGGCAGAACCCGCAAGTAAGCCCATCAGGAGCCGTTATTCAGAGAAATGAAGTGCAGATTGTTTGTGCAGACGCATGAAGCTGCTTGGTGTATCCTCTCATCACAAGCGAGCTGCACTGCCATGTAGGAACAAGCAGGAATACATTAAAAGGTAATGAGAGATCAGTCAGAAGAGGGTCATGCAGGGGCACTGTTTGGCATCGCCATTGCCGGAGAGAGCTTTCAGCGTGACGGCCTTGTTGTCTCTGTTGAGGAGCCAGAAGGGGTGGAGTTCAACAATGTTCCTCATGGCAACAGTTGCTAAGCCTTGCTTCTTGTTGATGTGGTTATTTGTTAATCAAAATTGGGTGCAAGAGATTAGCAAgtattgtatatatgtgtgttatttcatatACTAACGATGActtgaataaatattttcattcaagACCA
>XR_004577074.1
CTTCCGTAACGAATTCGTATAAACTTGTTAACTGCGTAATTACGCGATGCGTGCTAGCTGTATGGTAATTACGCACAAGTCACAGTCCAAGGTTCTGTCATTGGATGTCCCGGCTAACTGACAGCATTTCCCTGCTGCAATCAGGAGCTCGTTACAGttgaaaatgtatgtaaattgcACATGCACTTAGTGGTTTGGCAAATCGCGTTCACATTATAAACCACGCTGTAAATACACACGACAACGCTCACTTAATTCACATTTCACATCGTTTCATTTTTATGGTCAACACGTTACTTTATAATATGGCGTTCATTTACTTTAAAGGGTGATGAAAAAGTAATTATAGTCGCAATCAGTTATATCCAAATCCCATTTGATTACCCGCTACACTGTATTTAAATAGCTCCAATAAAATTGTGAACAATTCATCTGTAATGATTATGGACGAAGTTTATTTTTGGAGGTGGAATAAAAGTAGATATAGCATAAATTATCCGCTAATTATACGCCAGTGTCGCCTCAATTATCCTCTTATCAAAAATGGTCGTCTAAATGCAGCGTTTAGTTtcaattttctccctttctgtAACAAGAACTTGGTACCTTGCTATTATTGCCAGGGTTGTTATTTACTTTGCGGGATTTAAAAGTGCACAAGCGGCCTGGATACCCACTCTGCGTGAACGGACGAGCAGAGACACAGGGCCAGCTGATCGTTCAAAAGCTCGCGCTGCTGGACTTTTCACTGATTTCTGCTGGCAACAAAACATAGCTGGAATTTGTATTTAAGACATTATGACAGgGAGCCTGATTTGAGATGTTCTTCTGTTGTTGATTGCTCAACATTGAGAGATATTTCAAGGGCTCAGAGAGCTGACTGAGGAGAAGTCTTTTGAAAGAGCAAAGCCCGATGACCAGGCGAAGGAAATCAAGGCTCCCTAGTGTGTCGCCTTAGCAACGGGGGAAAATTAGCATTGACTTCCGAGCAAGCCTACAAAACTAGGCTTCAGGGTATTTTTTACATCTTGAAAAGTGACAATCAAAGAAGATCTAAAGACACGCTTCCACTTCCATTTATATTGAaatcagtttctttcttttttccgcTGCCCGAACACAAAAAGTCttaatgtatgtatttttgctcattttactGTGTTGTGCAGTTTCCCCGCAATGCCCCCTTGCTCATGTTTGCCTCCCGCCGTGGCAAACAGAACACGTCTATGATAGTGAATGCATTTCAGAGTACTTCCCAACATGAACTAGAGCTGACACTGGCTTCCTCATTCGCAGGCATGGAATTCAGCTCTCATGATTGCCAACACGCTTAATGATAGCGTCTCCTAGAGTCACAGAAGTATCACACTGAtgcaccatctctctctctctccctctcttcatcACATTGCAGGGAATTCAGCGGCGTCCAAACGGCAGAACCCGCAAGTAAGCCCATCAGGAGCCGTTATTCAGAGAAATGAAGTGCAGATTGTTTGTGCAGACGCATGAAGCTGCTTGGTGTATCCTCTCATCACAAGCGAGCTGCACTGCCATGTAGGAACAAGCAGGAATACATTAAAAGGTAATGAGAGATCAGTCAGAAGAGGGTCATGCAGGGGCACTGTTTGGCATCGCCATTGCCGGAGAGAGCTTTCAGCGTGACGGCCTTGTTGTCTCTGTTGAGGAGCCAGAAGGGGTGGAGTTCAACAATGTTCCTCATGGCAACAGTTGCTAAGCCTTGCTTCTTGTTGATGTGGTTATTTGTTAATCAAAATTGGGTGCAAGAGATTAGCAAgtattgtatatatgtgtgttatttcatatACTAACGATGActtgaataaatattttcattcaagACCA
>XR_004577075.1
GAATCCCTCCGCAAATGGTGTATGAATAATGACAGTTAGCTTCAACTGTATAACGCTCAACAATAATTATACTTCCACCAGGATTAGGGGTCCATTATCATAATCTGGACATTTACAATTATCTATAATTTGCAAAGATGCGCTTGGTTCTTGATTGCAGAAGGCTTTTTCTGGCTCACCATCGCTAAACAGTGACAGTAATAACGGTTAATTTTGCGGCCAATATATAAGAGGTGTCGGGCTGTGCAAAACACTTTCACACCTGAATTTGCTTACTCAACCACGAGCAGTGCATGGGACTGTCCCTATTCCCTGCGGGATCTGCGCCGAAACCACGGCCTCTGTCCGGCTCTGGATGGAGgGAGCCTGATTTGAGATGTTCTTCTGTTGTTGATTGCTCAACATTGAGAGATATTTCAAGGGCTCAGAGAGCTGACTGAGGAGAAGTCTTTTGAAAGAGCAAAGCCCGATGACCAGGCGAAGGAAATCAAGGCTCCCTAGTGTGTCGCCTTAGCAACGGGGGAAAATTAGCATTGACTTCCGAGCAAGCCTACAAAACTAGGCTTCAGGGTATTTTTTACATCTTGAAAAGTGACAATCAAAGAAGATCTAAAGACACGCTTCCACTTCCATTTATATTGAaatcagtttctttcttttttccgcTGCCCGAACACAAAAAGTCttaatgtatgtatttttgctcattttactGTGTTGTGCAGTTTCCCCGCAATGCCCCCTTGCTCATGTTTGCCTCCCGCCGTGGCAAACAGAACACGTCTATGATAGTGAATGCATTTCAGAGTACTTCCCAACATGAACTAGAGCTGACACTGGCTTCCTCATTCGCAGGCATGGAATTCAGCTCTCATGATTGCCAACACGCTTAATGATAGCGTCTCCTAGAGTCACAGAAGTATCACACTGAtgcaccatctctctctctctccctctcttcatcACATTGCAGGGAATTCAGCGGCGTCCAAACGGCAGAACCCGCAAGTAAGCCCATCAGGAGCCGTTATTCAGAGAAATGAAGTGCAGATTGTTTGTGCAGACGCATGAAGCTGCTTGGTGTATCCTCTCATCACAAGCGAGCTGCACTGCCATGTAGGAACAAGCAGGAATACATTAAAAGGTAATGAGAGATCAGTCAGAAGAGGGTCATGCAGGGGCACTGTTTGGCATCGCCATTGCCGGAGAGAGCTTTCAGCGTGACGGCCTTGTTGTCTCTGTTGAGGAGCCAGAAGGGGTGGAGTTCAACAATGTTCCTCATGGCAACAGTTGCTAAGCCTTGCTTCTTGTTGATGTGGTTATTTGTTAATCAAAATTGGGTGCAAGAGATTAGCAAgtattgtatatatgtgtgttatttcatatACTAACGATGActtgaataaatattttcattcaagACCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004577073.1 False 1435 lncRNA 0.43 2 8876951 8891060
XR_004577074.1 True 1869 lncRNA 0.42 2 8880308 8891060
XR_004577075.1 False 1425 lncRNA 0.45 2 8875957 8891060

Neighbor

gene id symbol gene type direction distance location
dlx5a dlx5,dlx5a,LOC107670186,LOC106570474 coding upstream 1515 8872595 ~ 8874442 (+)
chrac1 chrac1,LOC107591666,LOC107580926,LOC107722130 coding upstream 32839 8839251 ~ 8843118 (+)
c23h6orf62 c24h6orf62,cunh6orf62,zgc:111986,LOC103042486,LOC107555566,LOC107724342,LOC107702127,LOC107743835 coding upstream 51132 8820384 ~ 8824825 (+)
ripor2 fam65b,LOC107555568,LOC102779249 coding upstream 60988 8767996 ~ 8814969 (+)
si:dkeyp-120h9.1 si:dkeyp-120h9.1,LOC108257412,LOC106570559 coding upstream 125731 8737159 ~ 8750226 (+)
pdk4 pdk4,LOC107722149,LOC107669734,LOC107591595 coding downstream 143402 9034462 ~ 9053330 (+)
tfpi2 NA coding downstream 361046 9252106 ~ 9255479 (+)
calcr calcr,LOC107669839,LOC107558586,LOC107712922,LOC107667776 coding downstream 372701 9263761 ~ 9315951 (+)
LOC113536235 NA coding downstream 689855 9580915 ~ 9594532 (+)
efcab1 efcab1 coding downstream 706509 9597569 ~ 9600349 (+)
G340339 NA non-coding upstream 16294 8850968 ~ 8859663 (+)
G340336 LOC108256786 non-coding upstream 30273 8844274 ~ 8845684 (+)
G340297 NA non-coding upstream 207175 8668579 ~ 8668782 (+)
G340257 NA non-coding upstream 258916 8613486 ~ 8617041 (+)
G340248 LOC108256763,LOC108425228,LOC103022454,LOC106515840,LOC107724303,LOC107087831,LOC107584252 non-coding upstream 384043 8489679 ~ 8491914 (+)
G340517 NA non-coding downstream 25546 8916606 ~ 8917800 (+)
LOC117595810 NA non-coding downstream 71877 8962937 ~ 8966727 (+)
G340574 asb4 non-coding downstream 163340 9054400 ~ 9058481 (+)
G340600 casd1,LOC107591593,LOC107665666,LOC107731667 non-coding downstream 243989 9135049 ~ 9135716 (+)
G340594 casd1 non-coding downstream 246639 9137699 ~ 9139548 (+)
G340208 LOC108256789 other upstream 590753 8282960 ~ 8285204 (+)
LOC113536074 LOC108257189,LOC108257413 other upstream 604458 8240697 ~ 8271499 (+)
G339324 NA other upstream 2158811 6711015 ~ 6717146 (+)
mturn mturn,LOC107559763,LOC107572558 other upstream 2259934 6604605 ~ 6616023 (+)
LOC113535938 tmem196,LOC106588729,LOC107667578,LOC107568813,LOC107755951,LOC107571147,LOC107655099 other upstream 2532048 6333989 ~ 6343909 (+)
sem1 NA other downstream 21868 8912928 ~ 8915846 (+)
sgce sgce,LOC107722147,LOC107669779,LOC107665667,LOC107731676 other downstream 227954 9119014 ~ 9134179 (+)
bet1 bet1,LOC107669829,LOC107722155 other downstream 333544 9224604 ~ 9229638 (+)
zgc:91910 zn706,LOC108425704,LOC107653862,LOC101168967,LOC107556412,LOC104931588,LOC107710523,LOC107670289 other downstream 1302687 10193747 ~ 10197002 (+)
G341451 col8a2,LOC107565043,LOC107710560 other downstream 1583423 10474483 ~ 10481970 (+)

Expression


Co-expression Network