LOC117595895


Basic Information

Item Value
gene id LOC117595895
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 2201780 ~ 2203741 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004577080.1
ctctgctgtactggagaatcctcactgtaaactggagacactgaggatGTGTAATTGTGAtatctcagatgaaggctgtgctgctctgacttcagctctgagatcaaacccaccacacctgagagaactggatctgtcttTGAATAAACTCAGAGAcccaggagtgaagctgctcttcAGTCTTAAAGATGACAAACTTTACCAACTCCAGGATTTGAAgGTTTAAAGTATTTTCATCAGATGCAGACTCCAAAGAAGCCATGTTTATTAAATGTACTCAAATCATAGAGGCATTTCCTGgacattttttccctcatgttGGGGAATGAAGAACAGTTTGTTCATTTTGCAGAGATGTGCATTTATGCTTGGTTGGTGTGATTCTTCATGTGCCTTAGTGCCTTTACAGAGAGCTGTCGCAACACTACCGTCAGGAATAAGCGCTTACTGTACTGAagacaaattaattattaacttcatcatcattatcatcatcacacaaTTCCACAGTGATATTGTACAGAATCCAGACATCATGACAGGACTCAAGTTCTGGTTAAGGTTCCAGTAGAGGTCACTAATTGCAGACTTTCACTAGTCTACACTCCAGGCTTCAGCCCCCTTCCTTTGCCACCTTACCACTCTATCACATCTTCTGTCTGAAAGACTCCAAAAGAGACCACCATAGCTGAAGCAGTGGCTATTTACTTATTGATTATTTGTTGAGAATTCTGGCATTCAGTGTTCTTATGTCAATTTAAGTCTTACCGTTCTTGTAAACTGTACAGttgaacagtgtttttaaatgttagtaAAGACatccttcattattttttcccacAGGCCATCTCCCTCATGAACAGTTAATATGGAGACTAACCTtttaagggcagttgttgggtTATAGTGCAATATATGACTGCTACTTTGTAACCGACACATACTGGTTTGcacaactgattttttttttttaacatacccGTTGGACATATGCAATACTGTGTACTGGTTATATTGGTCTACTCCGCCCCTTTTCCCCCTACCTTTTCTACTTTAATAAATGTCTTTATTATATGTTGTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004577080.1 True 1081 lncRNA 0.39 3 2201780 2203741

Neighbor

gene id symbol gene type direction distance location
LOC113546187 LOC108257276,LOC108412938,LOC107668707,LOC107689551,LOC107559391 coding upstream 38257 2156555 ~ 2163523 (+)
rims2b LOC108257276 coding upstream 58758 2074883 ~ 2143022 (+)
cthrc1a cthrc1a,cthrc1,LOC108257304,LOC108438867,LOC107746934,LOC107675657,LOC107668704,LOC107754923 coding upstream 135870 2059332 ~ 2065910 (+)
mc5ra mc5ra,LOC108257298,LOC108438868,LOC103022384,LOC107746932,LOC107552309 coding upstream 162733 2026407 ~ 2039047 (+)
rnmt rnmt,LOC107746930 coding upstream 198446 1991814 ~ 2003334 (+)
LOC113546299 LOC108257284,LOC108257282,LOC108257326,LOC108257286,LOC108257289 coding downstream 6051 2209792 ~ 2240423 (+)
LOC117595862 rdm1 coding downstream 244475 2448216 ~ 2453296 (+)
rdm1 rdm1 coding downstream 337741 2541482 ~ 2551073 (+)
ifnphi3 LOC108256834 coding downstream 350916 2554657 ~ 2556829 (+)
LOC117595863 NA coding downstream 362951 2566692 ~ 2568040 (+)
G336849 fam210a,LOC107675659,LOC107754921,LOC107566562,LOC107668710 non-coding upstream 217284 1965976 ~ 1984496 (+)
G336482 NA non-coding upstream 358810 1842589 ~ 1842970 (+)
G336481 NA non-coding upstream 359244 1821132 ~ 1842536 (+)
G336261 NA non-coding upstream 444376 1756185 ~ 1757404 (+)
G336256 pabpc1,LOC107672855 non-coding upstream 460773 1738163 ~ 1741007 (+)
LOC117595896 NA non-coding downstream 38444 2242185 ~ 2259536 (+)
G336991 NA non-coding downstream 39752 2243493 ~ 2244230 (+)
G337052 NA non-coding downstream 193362 2397103 ~ 2397302 (+)
G337059 rdm1 non-coding downstream 246778 2450519 ~ 2551280 (+)
G337066 NA non-coding downstream 303819 2507560 ~ 2511667 (+)
G336822 ldlrad4 other upstream 255914 1876274 ~ 1945866 (+)
polr2k NA other upstream 521428 1675040 ~ 1680352 (+)
G336433 parp10 other upstream 542321 1657317 ~ 1659459 (+)
G336334 NA other upstream 866206 1269809 ~ 1335574 (+)
LOC113546301 LOC108257282,LOC108257281,LOC108257284,LOC108257326,LOC108257289,LOC108257286,LOC108257310 other downstream 98404 2302145 ~ 2340261 (+)
LOC113546300 LOC108280069,LOC108261210,LOC108257281,LOC108257282,LOC108257284,LOC108257326,LOC108257286,LOC108257289 other downstream 154375 2358116 ~ 2392537 (+)
rsad1 rsad1 other downstream 2104181 4307922 ~ 4325036 (+)
G338163 NA other downstream 2148781 4352522 ~ 4355029 (+)
pbx4 pbx4,LOC107757367,LOC107672472,LOC107670485,LOC103392870,LOC102788435 other downstream 2412583 4616324 ~ 4668256 (+)

Expression


Co-expression Network