G358519


Basic Information

Item Value
gene id G358519
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047619.1
NCBI id CM018565.1
chromosome length 19570078
location 971580 ~ 972346 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU424781
agaTCTTTATGGAGTTGTGAGggatctgtatggtggacagatctttatggagtcctgagggatctgtatggtggacagatctttatggagtcctgagggatctgtatggtggacagaTCTTTATGGAGTTGTGAGggatctgtatggtggacagaTATTTATGGAGTCCTAAGTGAACAAACGACTGAACAAGCACCGAGTGGCCTGTGTGGCCTGTGGATGAATCCTTCTGATgctgtaaaggagaaatcagcATGAGCGTGTCATTAGCAGTGTGAGAGGAGAAgaacagttgattCTGCAGTAACCGAAGGTGAGATCTGAGAGGTGTACAGGGAGATCATgagatcctgacatggggatggatcacctgggatgaacagcagttcagttttgctgggattaagcttcagctgatgagctgagttccatgatgagatgtctgaaAGACATGCTGAGATCCGTGCAGAAACACGAGTGTCTGAAGAAGGGAAGGAGACGATGAgttgagttgagtgtcatctgcatagcagtggtatgaaaacccatgtggtGATAAGACCTCACTGTGAGATCGAGTACAGAAGGAGAACAGAAACTGCTAGCTAGCTTTCAATAGCTTTGTAGCTACGCTATTACACTCCCTTACATCACAccgctgttgagttctggattctgattggtcagaagaagagcatctgcaaatcacaggattatactcattgtgttaattattgtttctat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU424781 True 744 lncRNA 0.45 2 971580 972346

Neighbor

gene id symbol gene type direction distance location
tk2 tk2 coding upstream 494608 466540 ~ 476972 (+)
dync1li2 dync1li2,LOC107562216,LOC106561980 coding upstream 550712 405979 ~ 420868 (+)
nae1 nae1,LOC107562208 coding upstream 595334 362885 ~ 376246 (+)
si:ch211-260e23.9 LOC108259284 coding upstream 632939 330987 ~ 338641 (+)
plekhf1 plekhf1 coding upstream 648250 320536 ~ 323330 (+)
cdh8 cdh8,LOC108259133,LOC107751507,LOC107591036,LOC107708568,LOC107655537,LOC107561036,LOC107660669 coding downstream 331535 1303881 ~ 1433318 (+)
LOC117596061 NA coding downstream 918228 1890574 ~ 1904591 (+)
itfg1 itfg1,LOC103369364,LOC107395746 coding downstream 1048374 2020720 ~ 2174969 (+)
LOC113540805 neto2,LOC107757778,LOC107591032,LOC107660668,LOC107598688,LOC107723137 coding downstream 1205632 2177978 ~ 2203598 (+)
dnaja2a dnaja2,LOC107723138,LOC107757777 coding downstream 1314724 2287070 ~ 2298515 (+)
G358513 NA non-coding upstream 25066 908496 ~ 946514 (+)
G358518 NA non-coding upstream 27558 939236 ~ 944022 (+)
G358515 NA non-coding upstream 42889 926763 ~ 928691 (+)
G358508 NA non-coding upstream 56613 877256 ~ 914967 (+)
G358478 NA non-coding upstream 338887 632488 ~ 632693 (+)
G358577 NA non-coding downstream 167661 1140007 ~ 1140358 (+)
G358587 NA non-coding downstream 267568 1239914 ~ 1240138 (+)
G358713 NA non-coding downstream 477809 1450155 ~ 1450465 (+)
G358720 NA non-coding downstream 635293 1607639 ~ 1607911 (+)
G358726 NA non-coding downstream 743200 1715546 ~ 1715887 (+)
cmtm4 cmtm4 other upstream 519566 426873 ~ 452014 (+)
ccne1 ccne1 other upstream 619811 344062 ~ 351769 (+)
c25h16orf87 c27h16orf87,cunh16orf87,clg02h16orf87,cssa11h16orf87,LOC103043940,LOC106587296 other downstream 1348778 2321124 ~ 2386730 (+)
igdcc4 LOC108259659 other downstream 1663943 2636289 ~ 2694287 (+)
cilp cilp,LOC107670750,LOC107750479,LOC107554910 other downstream 1813281 2785627 ~ 2823338 (+)
cebpa cebpa other downstream 2273364 3245710 ~ 3300683 (+)
cylda cyld,cylda,LOC107551493,LOC107657079 other downstream 2741306 3713652 ~ 3767714 (+)

Expression


Co-expression Network