mettl21a (mettl21a,LOC108415896,LOC107663696)


Basic Information

Item Value
gene id mettl21a
gene name mettl21a,LOC108415896,LOC107663696
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047619.1
NCBI id CM018565.1
chromosome length 19570078
location 18025208 ~ 18027979 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU435825
TGTTTTGACCCCACCCACCTCGCGCGCGCGGATTGGATTGGCTAATTCAATTCAACGTTCAgttttttacattcttttacattctaattaaaaaaaagcatatctATAATGTTTTTAAACCTTTATATTGCTGTAGCGCGTGAATAAGAGTCGTGTTTTAAAGCAGAAAGTTTATTAATCCGTGAGATTTAGCTATGCTAGTCAGTTTCATTAGCATGTAAACATTGCGCGTGACCGTCGGGTGTCTCGAGCGCGTTCAACTCCATTTTATATGTGTGATAAAGTTGTATTGTATAAAGTAATTTGTTTGTGAGTTTGTCAGCATGGCGTTGGTGCCGTATGATGAAAACATCCTGCCTTCTCTGTCCAAACTCCACTCGTCTTCCGCCGAGTTCCGGTTCGCCGAGCGCCGCATCCGATTGGCTCAGGACTGGAGAAAAGGGGGCGTGGCCGCCGTCGTGTGGGACGCGGAGCTGATGTAACGATCACCGACCGAAGACCAGCGCTGGAGTTCTTGGAGGCTAACGTGAGGGAGAACGTTCCTCCACACCTGCAGGGGGCGGTGCGAGTTTCTGAGCTCACCTGGGGAGAAGGATTAGCAGGCTATCCCCCAGGCGGCTACGACCTCATCCTGGGAGCGGACATCGTTTACCTGGAGGAGACGTTCTCCGCTCTGCTGCACACGCTGGAACACTTGAGCTCGGAGAACACGGAGGTCCTGCTGGCGTGCCGGATCCGTTACGAGCGAGACGAGCGCTTTCTGAGCATGCTGGGAAATCGCTTCTCAGTGCAGGAGGTTTACTACGATTCACAGCGGGACGTTCACATCTACAGAGCGGTGAAAAATAAGACGAAGACCGAGCTCTGAGGACCAGACTGATAACTGATAACGTCCTGATAACTGTCTAAGATTTTATCTCTGCGCATGTTGATGTCATGATActgt
>XM_026910476.2
AAGTAATTTGTTTGTGAGTTTGTCAGCATGGCGTTGGTGCCGTATGATGAAAACATCCTGCCTTCTCTGTCCAAACTCCACTCGTCTTCCGCCGAGTTCCGGTTCGCCGAGCGCCGCATCCGATTGGCTCAGGACTGGAGAAAAGGGGGCGTGGCCGCCGTCGTGTGGGACGCGGCGGTGGTGATGTGCGTGTACCTGGAGCTCGGCCGTGTGGACCTGAAGAACAGAACCACCATCGAGCTCGGAGCCGGGACTGGGCTGGTGGGCATCGTCGCTGCGCTGCTCGGAGCTGATGTAACGATCACCGACCGAAGACCAGCGCTGGAGTTCTTGGAGGCTAACGTGAGGGAGAACGTTCCTCCACACCTGCAGGGGGCGGTGCGAGTTTCTGAGCTCACCTGGGGAGAAGGATTAGCAGGCTATCCCCCAGGCGGCTACGACCTCATCCTGGGAGCGGACATCGTTTACCTGGAGGAGACGTTCTCCGCTCTGCTGCACACGCTGGAACACTTGAGCTCGGAGAACACGGAGGTCCTGCTGGCGTGCCGGATCCGTTACGAGCGAGACGAGCGCTTTCTGAGCATGCTGGGAAATCGCTTCTCAGTGCAGGAGGTTTACTACGATTCACAGCGGGACGTTCACATCTACAGAGCGGTGAAAAATAAGACGAAGACCGAGCTCTGAGGACCAGACTGATAACTGATAACGTCCTGATAACTGTCTAAGATTTTATCTCTGCGCATGTTGATGTCATGATActgtctgttaaaaaaaatcattgttattAAAAGTCTTTCTTTGCTC

Function

symbol description
mettl21a Predicted to enable protein-lysine N-methyltransferase activity. Predicted to be involved in peptidyl-lysine methylation. Predicted to act upstream of or within methylation. Predicted to be active in cytosol. Orthologous to human METTL21A (methyltransferase 21A, HSPA lysine).

NR:

description
PREDICTED: protein N-lysine methyltransferase METTL21A

GO:

id name namespace
GO:0018022 peptidyl-lysine methylation biological_process
GO:0005737 cytoplasm cellular_component
GO:0016279 protein-lysine N-methyltransferase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU435825 True 946 lncRNA 0.50 2 18025250 18027979
XM_026910476.2 False 804 mRNA 0.55 3 18025208 18027683

Neighbor

gene id symbol gene type direction distance location
dpp4 LOC108259492 coding downstream 8100 17996547 ~ 18017108 (-)
gcga LOC100304621,LOC108415900 coding downstream 30050 17987586 ~ 17995158 (-)
pcyt2 pcyt2,LOC108259513,LOC103356210,LOC102797054,LOC100710274 coding downstream 39102 17975961 ~ 17986106 (-)
gnav1 LOC108259514,LOC107756032,LOC108411594,LOC107586948,LOC107704417,LOC103356208 coding downstream 50775 17933333 ~ 17974433 (-)
slc26a11 slc26a11 coding downstream 104582 17909436 ~ 17920626 (-)
krt222 krt222 coding upstream 16592 18044571 ~ 18058050 (-)
mmadhca LOC108259523 coding upstream 73512 18101491 ~ 18107397 (-)
adarb1a adarb1,adarb1b,LOC107687876,LOC107695965 coding upstream 85070 18113049 ~ 18138239 (-)
fam207a fam207a coding upstream 113829 18141808 ~ 18153394 (-)
plcd4a plcd4a,LOC108259491,LOC108411587,LOC107739328,LOC107600964,LOC107687884,LOC107586990,LOC105901775 coding upstream 140087 18168066 ~ 18185191 (-)
LOC117596021 NA non-coding downstream 190562 17736425 ~ 17834646 (-)
G367864 NA non-coding downstream 377781 17482169 ~ 17647427 (-)
G367957 NA non-coding upstream 55165 18083144 ~ 18118467 (-)
G368003 NA non-coding upstream 119742 18147721 ~ 18160127 (-)
LOC117596040 LOC108259491,LOC108411587,LOC103363317,LOC101175056 non-coding upstream 126484 18154463 ~ 18165517 (-)
G367961 NA non-coding upstream 174920 18202899 ~ 18205487 (-)
G367995 NA non-coding upstream 204741 18232720 ~ 18234116 (-)
G367947 NA other downstream 92523 17930798 ~ 17932685 (-)
atp6ap2 atp6ap2,LOC107745967 other downstream 304790 17481167 ~ 17720418 (-)
G367877 bcor,LOC108444103,LOC107586940 other downstream 310359 17664734 ~ 17714849 (-)
LOC117596081 NA other downstream 399204 17621639 ~ 17626004 (-)
LOC117596036 NA other downstream 514085 17495042 ~ 17511123 (-)
LOC117596063 NA other upstream 170663 18198642 ~ 18227779 (-)
ahr2 LOC108259484 other upstream 273102 18301081 ~ 18506692 (-)
LOC117596053 LOC108259411,LOC108259445 other upstream 399482 18427461 ~ 18434861 (-)
s100b s100b,LOC108259544 other upstream 673923 18701902 ~ 18729461 (-)
si:ch211-246m6.5 NA other upstream 825729 18853708 ~ 18889071 (-)

Expression


Co-expression Network