cdh11 (cdh11)


Basic Information

Item Value
gene id cdh11
gene name cdh11
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047619.1
NCBI id CM018565.1
chromosome length 19570078
location 953205 ~ 995231 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026937569.2
GTGATCGGATCCGCTGGAGTTTGGGAACAAACTGAGACTCGGCGCCTGGGATGAACCTCAGCGTGGGCGGACATATTAAGTGAACCACCGCTTCGTCTACATCAAATCCACCCTATTTCCTCCCCAGAACCAAAACATCCAAGCTTCAggacgtaaaaaaaaaatactctgagCAGGACGTCGGCGAGAACGGACAGGATGTGGGACGGTTTGAGAGTTCAGGTGTTCTTCTTGTGTTTAATAGCGATGTTATGGATTACAGCGGCGTCTCGAGCCCCTCAGGAACACGGACATCGCCGCCATCTTGCTTCCTACAGACAccgagagagaagaaaggatgGACACGTGCTCCATCGCTCCAAGCGAGGATGGGTTTGGAATCAGTTCTTCGTCATTGAGGAGTACACGGGACCTGATCCTGTCCTCGTGGGCCGGCTTCACTCTGATGTGGACACAGGGGACGGCAACATCAAATACATCCTCTCAGGTGAAGGCGCCGGAACCATCTTCGTCATCGATGATAAAACAGGTAACATCCATGCAACGAAGACGCTGGACCGTGAAGAACAAGCGGAGTACACGCTCACCGCACAGGCCGTGGCCCGAGACACCAACAAACCTCTGGAGCCTCCGTCCGAATTCATCGTCAAGGTCCAGGACATCAACGACAACCCGCCTGAGTTCCTGCATGGACCATACTACGCTCGCGTGGCTGAGATGTCCAACGTCGGTACGTCAGTGATTCAGGTCACGGCTACAGACGCCGACGATCCGACGTACGGAAACAGCGCTCGGCTCGTCTACAGCATCCTGCAGGGACAGCCGTACTTCTCTGTGGAACCTCACACAGGGATTATCCGCACTGCGCTGCCCAACATGGACCGAGAGGCTAAGCAGGAGTACGATGTGGTCATCCAGGCGAAGGACATGGGGGGCCACATGGGCGGCCTCTCGGGGACGACGCAGGTGAAAATCACGCTAACGGACGTCAACGACAATCCGCCCAAATTCGCACAAGgtgtgTATTCGATGTCCGTGTTGGAGGATAAAGTGCCGGGAGAGGAGGTGGGCCGTCTGAAGGCCAGAGATCTGGACCTGGGAGAGAACGGACTGGTGGAGTACACGCTGCTGGATGGAGATGGAATGAACACCTTCGAGATCAGCAAAGACTCCGAGACTCAGGAGGCCGTCATCAAACTgaagaagCACGTGGACTTTGAGACGAAGCGGTCGTACACGCTGAAGGTGGAGGCGGCGAACCCGCACGTGGACCCTCGCTTCATCAGCTGGGGGCCGTATAAAGACACGACGGTGGTGAAAATCTCTGTGGAGGACGCTGACGAGCCGCCGACCTTCATGGCTCCCAGTTACAGCTTCGAGGTGGAGGAGAACGCGCCAGGGGGAACCGTGGTGGGACGCGTACACGCCAAGGACACGGATATCGCCAACAATCCCGTCAgATATTTAATCCCTCGCTACACAGATCTGGAGGAGTTTTTCTCCATTAACCCCGAGGACGGCATCATCAAAACCACGAGGCCTCTGGACCGGGAGACTCAGGCTTGGCACAACATCTCCGTGAGCGCTACAGAGATCGGTGGACATCACCAGGACGCTAAAGTGCGAGTGAACATCAAAGTAAAGGACGTGAACGACAACGCTCCGGAGTTCGCCACTCAGGATGAAGTGCTCATGTGTGAAAACGTGACTCCGGGAACGGCCATAAAGACGGTGAGCGCGGTGGATAAAGACGAGATGGCGCACCGGCAGCACTTCCACTTCAGCCTCTCTCCCAAAGTGGCCAATAACCACAACTTCTCTCTGAAGGACAACAGAGACAGTACAGCTACGGTGGTGGTGATCCGGAAAagtttcagcaggatgatgcagAACGTTTACGCTCTGCCCATCGAGATCAGCGATAACGGCGTGCCTCCTCTCAGCAGCACCAACACCCTCCTGATCCAAGTGTGCAGCTGCGACGCCAAACAGACCATCCTGTCCTGTAACGTGGAACCGTTGTTCCTGCCGGCGGGCCTCAGCACCGGAGCGCTCATCGCCATCCTCGCCTGCATCGTCATCCTGCTCGCGATCGTGGTGCTCTTCGTGGCTCTGCGCCGTCAGAAGAAGGAGCCCTTGATCGTGTTTGAAGAGGAGGACATCCGTGAGAACATCATCACGTACGACGACGAGGGCGGCGGTGAGGAGGACACGGAGGCGTTCGACATCGCCACGCTGCAGAACCCCGACGGCATCAACAGCTTCCTGCCTCGCAAAGACATCAAACCCGAGCTGAGCTACAGCGTCCGCGCCGGACTCAGACCCGCCGGCAACGGCGTCGACGTGGACGAGTTCATCAAGACGCGAGTGTGCGACGCCGACAACGACCCCACGGCGCCTCCGTACGACTCCATCCAGGTGTACGGCTATGAGGGGCGGGGCTCCATCGCCGGCTCTCTGAGCTCGCTGGAATCGGTGACCACAGATTCGGACCTGGACTACGACTACCTCCAGAACTGGGGGCCGCGTTTCAAAAAACTGGCCGATCTTTACGGCACCAAAGACTCGGCAACCGAAGACAACTCTTAACGACGGATCACGTTCGTcttcgcaaaaaaaaaacccgccCACCCAAAACAGCTCCCCTCCCCCCCTTTGCCATCACTTCCACTAACGACGTGTGCTGTGTGACGTTTACTATAAGCAATTCCACGACTTTCATCTATTTAGGTCGTTTTTTTGTTCCTGTATACGTCGAGTATACTACTAGGAATCTTTTACGTAGGCGTGATCAGAACAGATGGAGcagacaaaaaaatgagaaaaaaattaataaaaggaattaaaatgtgtaaaaaaaaaaaaaataaacaaacacctcTGACACGGGACGTACGGAAAGTCAAAGCAGCGCGTGTGTGGGACGCGACGTATTCGACATTGATTGCTGATACTGTGAACGAGCTCacgccagagagagagagagagagagagagagagagagagagagagagagaaacagttgCCTTATTAACACAACATACAGAAATACGTCAGCGATTTGAGACGTGTCCCTCATCAACAGCGCCTCCATCAGGACATCGGAGGAACGACCCAAAactggtcttttttttaattttgtattatttttgctttcatCTGTATTATCTTacacagaaatgagaaaatccatgaataataataataaaaaaaaagtccccgATGAACAATCACACAGAAAGACACGTGAGCTCGGAAACCGCCTTAAATCACGGACACTCTCGCAGCGCagtgcatttcttttttaaaaaacgaaAACTATATCCTAAAACAAACTAAAACCCATATAACCTGTGTACAGTACCAATGTGCAGATATGTCTCTTGAGGATCAAACTCACGCCTACCGGTTTCATGTACGtctttttattatgattattatgattattattttattatgatattattattattatgactatCATTATTTCCagtgtcttcattttttttattttctttaatattttttggcGTATTTTATTCTCCCTTGTGAGAAAAATAGCAATCTGTCCTGTCGCGGTGAAAGAACGGCTAATTTCTATGTCGATTTTATGGTAACTATTTGTACAATTTTAAAAGTTCTTATTTTAGTATACATACGAATATCAGTATTTCGACATGTAAGAAACTGTTACAGCATCACActtatattttatgaacattGTACTGTTGCTTTATTATGTGCTTCAATCTACGAAGCGGAAAAACTTTGAAATAAATGctctttttataaaataaacaaa

Function

symbol description
cdh11 Predicted to enable cadherin binding activity and calcium ion binding activity. Acts upstream of or within otolith development; retina development in camera-type eye; and retinal ganglion cell axon guidance. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be part of catenin complex. Predicted to be active in adherens junction. Is expressed in cleithrum; nervous system; optic vesicle; and pectoral fin bud. Human ortholog(s) of this gene implicated in Elsahy-Waters syndrome. Orthologous to human CDH11 (cadherin 11).

NR:

description
cadherin-11-like

GO:

id name namespace
GO:0048840 otolith development biological_process
GO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K06803 CDH11; cadherin 11, type 2, OB-cadherin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026937569.2 True 3802 mRNA 0.50 12 953205 995231

Neighbor

gene id symbol gene type direction distance location
tk2 tk2 coding upstream 476233 466540 ~ 476972 (+)
dync1li2 dync1li2,LOC107562216,LOC106561980 coding upstream 532337 405979 ~ 420868 (+)
nae1 nae1,LOC107562208 coding upstream 576959 362885 ~ 376246 (+)
si:ch211-260e23.9 LOC108259284 coding upstream 614564 330987 ~ 338641 (+)
plekhf1 plekhf1 coding upstream 629875 320536 ~ 323330 (+)
cdh8 cdh8,LOC108259133,LOC107751507,LOC107591036,LOC107708568,LOC107655537,LOC107561036,LOC107660669 coding downstream 308650 1303881 ~ 1433318 (+)
LOC117596061 NA coding downstream 895343 1890574 ~ 1904591 (+)
itfg1 itfg1,LOC103369364,LOC107395746 coding downstream 1025489 2020720 ~ 2174969 (+)
LOC113540805 neto2,LOC107757778,LOC107591032,LOC107660668,LOC107598688,LOC107723137 coding downstream 1182747 2177978 ~ 2203598 (+)
dnaja2a dnaja2,LOC107723138,LOC107757777 coding downstream 1291839 2287070 ~ 2298515 (+)
G358513 NA non-coding upstream 6691 908496 ~ 946514 (+)
G358518 NA non-coding upstream 9183 939236 ~ 944022 (+)
G358515 NA non-coding upstream 24514 926763 ~ 928691 (+)
G358508 NA non-coding upstream 38238 877256 ~ 914967 (+)
G358478 NA non-coding upstream 320512 632488 ~ 632693 (+)
G358577 NA non-coding downstream 144776 1140007 ~ 1140358 (+)
G358587 NA non-coding downstream 244683 1239914 ~ 1240138 (+)
G358713 NA non-coding downstream 454924 1450155 ~ 1450465 (+)
G358720 NA non-coding downstream 612408 1607639 ~ 1607911 (+)
G358726 NA non-coding downstream 720315 1715546 ~ 1715887 (+)
cmtm4 cmtm4 other upstream 501191 426873 ~ 452014 (+)
ccne1 ccne1 other upstream 601436 344062 ~ 351769 (+)
c25h16orf87 c27h16orf87,cunh16orf87,clg02h16orf87,cssa11h16orf87,LOC103043940,LOC106587296 other downstream 1325893 2321124 ~ 2386730 (+)
igdcc4 LOC108259659 other downstream 1641058 2636289 ~ 2694287 (+)
cilp cilp,LOC107670750,LOC107750479,LOC107554910 other downstream 1790396 2785627 ~ 2823338 (+)
cebpa cebpa other downstream 2250479 3245710 ~ 3300683 (+)
cylda cyld,cylda,LOC107551493,LOC107657079 other downstream 2718421 3713652 ~ 3767714 (+)

Expression


Co-expression Network