tk2 (tk2)


Basic Information

Item Value
gene id tk2
gene name tk2
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047619.1
NCBI id CM018565.1
chromosome length 19570078
location 466540 ~ 476972 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026937706.2
TACGCGTCGCACAACCCGGAAGTGTCGGGTTACGTGAATTCCCTTTAACCGCTgccatgcagtgtgtgtgtgctgtaacgCAGAGAGATGATGAACAGGTTCGGAGCcactttttgtcctttttggtTCAAATCTACATCCGTGAATGTGTTTAAAACTTTATTCCGAAATCCTGCTGCGAGAAATCAGAGTCTGAGCCGCGGGTTTCACATCAACAGCCAGCTCAGGACAGGAAAACTGGTCCGTAATGGTGAGGACAGGAAACCAGTGatttGCATCGAGGGAAACATCGCGAGTGGAAAGACGACGTGTCTGGAGTATTTCAGCAAAACCAGCAACATCGAGGTTCTGACGGAGCCGGTTTCCAAATGGAGAAACGTTCGAGGACACAATCCCCTGGCGCTGATGTACGAAGACCCGGCGAGGTGGGGTCTCACACTGCAGACCTACGTTCAGCTCACTGTCCTCGACCATCACCTGTCCCAAATCGCAGCGCCGGTCAGGATGATGGAGAGATCGATATACAGCGCAAAGTACATATTTGTGGAAAATCTGTATAAAAGTGGGAAGATGCCCGAGGTGGATTACGCCGTCCTGAGCGAGTGGTTCGAGTGGATCATCAGTAACATCTCCATTCCTGTAGATCTGATTGTTTACCTGCAGACGTCGCCTCAGAAGTGTTTTGATCGTCTGAAGCAGAGAtgcagagaagaagaaaaagtcaTTCCACTGgagtaCCTGCAAGCTCTTCATCATCTGTATGAAGACTGGCTGATAAATCACACCTCATTTAAAGTTCCTGCTCCTGTTCTGgtgatcCCAGCTGATCATGATCTTCAGAAGATGCTCCATCAGTAcgaggagaacagagagaagatCTTCACCGTGCCTCGAGCTTCATAAAGAGAAACGTTTTGTTCCAGAGGCAGTGTTCAATCCAGCCGAGTGTGTTTCCTGCCCTGTTTTAACttcattaagtgtgtgtgtgtgtgtgtgtattggggtAAGTGTTAAACAATACTTCATAAGggttaaataataatgtaaaaaataaataaatatcagtgaTAGTAATTAGGGATAATTATGAATCTTTGAACTGACAGTGAATCAATTTGATTCATGATTCAAAATCAATTTTTGTAAGTTAAGATGATTTGATTCAGTGAGTCGATTCAGTGAGtcattttttattgatttatatttttcccAGCTGCTAGTCtgtaacacgcacacacacacacacacacacacacacacacacacacacacacacacacacagtgtaatctCAGGCTCAGGTGTGTGTAGAGGACCATTTTCTAATGAagtttatttgttatttcttatatattattattatttattttcctcatttgcatattaattggTATATCATTCATATTTATCTTGCTGTTTAAATCACATTCCACAGATCAGACCTTCATCCTGTTTCGTAAAGTTAAAACACCGAACACAAGACCagtttttgtaaagtttatttttatttgtttgaagcGTACAAAACCCTGAAATGTTCTCATTAAGGAAGTGGCACGTGTGATTGGAGGACCAACGGAGACTCTCTGTACTTTTTACTGTCGTATTGTTTACACTGTAATTTTAATAAACCAGTGAGAAACAGA
>XM_026937707.2
ctttttgtcctttttggtTCAAATCTACATCCGTGAATGTGTTTAAAACTTTATTCCGAAATCCTGCTGCGAGAAATCAGAGTCTGAGCCGCGGGTTTCACATCAACAGCCAGCTCAGGACAGATCTGCAGCTGATCTGAGTTCAGCTTGTTTCATTATGTTGTCTTCTTCTCAAGGAAAACTGGTCCGTAATGGTGAGGACAGGAAACCAGTGatttGCATCGAGGGAAACATCGCGAGTGGAAAGACGACGTGTCTGGAGTATTTCAGCAAAACCAGCAACATCGAGGTTCTGACGGAGCCGGTTTCCAAATGGAGAAACGTTCGAGGACACAATCCCCTGGCGCTGATGTACGAAGACCCGGCGAGGTGGGGTCTCACACTGCAGACCTACGTTCAGCTCACTGTCCTCGACCATCACCTGTCCCAAATCGCAGCGCCGGTCAGGATGATGGAGAGATCGATATACAGCGCAAAGTACATATTTGTGGAAAATCTGTATAAAAGTGGGAAGATGCCCGAGGTGGATTACGCCGTCCTGAGCGAGTGGTTCGAGTGGATCATCAGTAACATCTCCATTCCTGTAGATCTGATTGTTTACCTGCAGACGTCGCCTCAGAAGTGTTTTGATCGTCTGAAGCAGAGAtgcagagaagaagaaaaagtcaTTCCACTGgagtaCCTGCAAGCTCTTCATCATCTGTATGAAGACTGGCTGATAAATCACACCTCATTTAAAGTTCCTGCTCCTGTTCTGgtgatcCCAGCTGATCATGATCTTCAGAAGATGCTCCATCAGTAcgaggagaacagagagaagatCTTCACCGTGCCTCGAGCTTCATAAAGAGAAACGTTTTGTTCCAGAGGCAGTGTTCAATCCAGCCGAGTGTGTTTCCTGCCCTGTTTTAACttcattaagtgtgtgtgtgtgtgtgtgtattggggtAAGTGTTAAACAATACTTCATAAGggttaaataataatgtaaaaaataaataaatatcagtgaTAGTAATTAGGGATAATTATGAATCTTTGAACTGACAGTGAATCAATTTGATTCATGATTCAAAATCAATTTTTGTAAGTTAAGATGATTTGATTCAGTGAGTCGATTCAGTGAGtcattttttattgatttatatttttcccAGCTGCTAGTCtgtaacacgcacacacacacacacacacacacacacacacacacacacacacacacacacagtgtaatctCAGGCTCAGGTGTGTGTAGAGGACCATTTTCTAATGAagtttatttgttatttcttatatattattattatttattttcctcatttgcatattaattggTATATCATTCATATTTATCTTGCTGTTTAAATCACATTCCACAGATCAGACCTTCATCCTGTTTCGTAAAGTTAAAACACCGAACACAAGACCagtttttgtaaagtttatttttatttgtttgaagcGTACAAAACCCTGAAATGTTCTCATTAAGGAAGTGGCACGTGTGATTGGAGGACCAACGGAGACTCTCTGTACTTTTTACTGTCGTATTGTTTACACTGTAATTTTAATAAACCAGTGAGAAACAGA

Function

symbol description
tk2 Predicted to enable deoxynucleoside kinase activity. Predicted to act upstream of or within nucleobase-containing compound metabolic process and phosphorylation. Predicted to be active in cytoplasm. Is expressed in exocrine pancreas and pectoral fin. Human ortholog(s) of this gene implicated in autosomal recessive progressive external ophthalmoplegia with mitochondrial DNA deletions 3 and mitochondrial DNA depletion syndrome 2. Orthologous to human TK2 (thymidine kinase 2).

NR:

description
thymidine kinase 2, mitochondrial-like

GO:

id name namespace
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0016310 phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0016773 phosphotransferase activity, alcohol group as acceptor molecular_function
GO:0016301 kinase activity molecular_function

KEGG:

id description
K00857 tdk, TK; thymidine kinase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026937706.2 True 1646 mRNA 0.42 10 466540 476972
XM_026937707.2 False 1590 mRNA 0.41 10 466649 476972

Neighbor

gene id symbol gene type direction distance location
dync1li2 dync1li2,LOC107562216,LOC106561980 coding upstream 45672 405979 ~ 420868 (+)
nae1 nae1,LOC107562208 coding upstream 90294 362885 ~ 376246 (+)
si:ch211-260e23.9 LOC108259284 coding upstream 127899 330987 ~ 338641 (+)
plekhf1 plekhf1 coding upstream 143210 320536 ~ 323330 (+)
LOC113525130 NA coding upstream 159777 299673 ~ 306763 (+)
cdh11 cdh11 coding downstream 476233 953205 ~ 995231 (+)
cdh8 cdh8,LOC108259133,LOC107751507,LOC107591036,LOC107708568,LOC107655537,LOC107561036,LOC107660669 coding downstream 826909 1303881 ~ 1433318 (+)
LOC117596061 NA coding downstream 1413602 1890574 ~ 1904591 (+)
itfg1 itfg1,LOC103369364,LOC107395746 coding downstream 1543748 2020720 ~ 2174969 (+)
LOC113540805 neto2,LOC107757778,LOC107591032,LOC107660668,LOC107598688,LOC107723137 coding downstream 1701006 2177978 ~ 2203598 (+)
G358331 NA non-coding upstream 30068 338823 ~ 436472 (+)
G358344 NA non-coding upstream 41897 379230 ~ 424643 (+)
LOC117596071 NA non-coding upstream 65684 399347 ~ 400856 (+)
G358338 NA non-coding upstream 71919 391333 ~ 394621 (+)
G358312 NA non-coding upstream 180013 284243 ~ 286527 (+)
G358359 NA non-coding downstream 8763 485735 ~ 487322 (+)
LOC117596049 NA non-coding downstream 68604 545576 ~ 548885 (+)
G358478 NA non-coding downstream 155516 632488 ~ 632693 (+)
G358508 NA non-coding downstream 400284 877256 ~ 914967 (+)
G358513 NA non-coding downstream 431524 908496 ~ 946514 (+)
cmtm4 cmtm4 other upstream 14526 426873 ~ 452014 (+)
ccne1 ccne1 other upstream 114771 344062 ~ 351769 (+)
c25h16orf87 c27h16orf87,cunh16orf87,clg02h16orf87,cssa11h16orf87,LOC103043940,LOC106587296 other downstream 1844152 2321124 ~ 2386730 (+)
igdcc4 LOC108259659 other downstream 2159317 2636289 ~ 2694287 (+)
cilp cilp,LOC107670750,LOC107750479,LOC107554910 other downstream 2308655 2785627 ~ 2823338 (+)
cebpa cebpa other downstream 2768738 3245710 ~ 3300683 (+)
cylda cyld,cylda,LOC107551493,LOC107657079 other downstream 3236680 3713652 ~ 3767714 (+)

Expression


Co-expression Network