dync1li2 (dync1li2,LOC107562216,LOC106561980)


Basic Information

Item Value
gene id dync1li2
gene name dync1li2,LOC107562216,LOC106561980
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047619.1
NCBI id CM018565.1
chromosome length 19570078
location 405979 ~ 420868 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034299617.1
AAATGCCGCCTCCCTTTGTGGTTTGGTTTGAGATACAAGATGGCTCCGGTGTTGGAGAAGAAGCTGCTGGGTGCAGCCGGGACAGAAGGCCACAACATGGACAACAGCGCCGAGGAGGATGAGGGACAAAACCTGTGGTCCTCGATCCTCAGCGAGGTGTCGACGCGATCCAGTACCAAACTGCCGTCTGGGAGGAACATCCTGCTCTTCGGTGACGATGGATCGGGGAAAACGACGCTGATGACCAAACTGCAGGGAGCGGAGCACAATAAGAAGGGCAGAGGACTGGAGTACCTGTACCTGAACGTGCACGATGAAGACAGAGACGACGTGACGCGCTGTAACGTGTGGATTCTGGACGGAGACGTTTATCACAAAGGCCTGCTGAAGTTTGCCGTGTGCTCCGAGTCTCTGAAGGACAGCGTGGCCGTGTTCGTGGTGGACATGTCCAGACCCTGGTCCATCATGGAGTCTCTGCAGAAGTGGACGAGTGTCCTGAGAGAACACGTGGACAAGCTGAAGATTCCTCCCGAGGACATGAGGGACATGGAGCAGAGGATGGTGAGGGCGTTTCAGGAGTATGCGGAGCCTGAGGAGGCGACTCCGTCCTCCCCTCAGAGACGAAGCGCTCCTGCAGGAGGAGATGACGAGTCAGTGGTGCTGCCGCTGGGAGAAAACGTCCTCACGCACAACCTGGGAATCCCCGTGCTGGTCGTCTGCACTAAGtgtgatGCTGTCACTGTGTTGGAGAAAGATCATGACTACAAAGAGGAGCATTTTGACTTCATTCAGTCGCACCTCAGGAGATTCTGCCTGCAGTATGGAGCTGCTCTGATCTACACGTCTGTAAAAGAGGAGAAGAACCTGGACCTTCTGTACAAGTACATGGTGCACAAACTGTACGACTTCCACTTCACCACACCGGCCTTAGTGGTGGAGAAAGACGCCGTGTTCATTCCGTCCGGGTGGGACAACGAGAAAAAAATCTCCATCTTACACGAAAACTTCACGACCGTCCGGCCGGAAGATCCGTTTGAGGATTTCATCATCAAGCCTCCAGTGCGCAAGttaGTGCACGATAAAGAGATAAACGCTGAAGATGAGCAGGTCTTCCTCATGAAGCAGCAGTCTTTGTTAGCCAAGCAGCCGGCCACTCCATCACGAGCAGCAgaatcTCCCGCGCGGACGGCGTCTGGTTCTCCTCGGCCCACTGTACGCACCGGACCCACCAACGTGGCGAGTGTGTCTCCCATGACGACCGTAAAGAAACCCGACCCCAACATGAAAGgagctGCTGCAAACGAGGGTGTTTTGGCGAACTTCTTTAACAGTCTGTTGAGTAAAAAGACCGGAGCGCCTGGAAGTCCGGGaacagcaggaacagcagtGCAGGGATCAGCCAAGaaaacaggGCAGAAGCCGGCTCTGAGTGACGTGCAGGCTGAACTGGACCGCATGACGCACAAATCTGACTCCACCGTCACGGCCAATCACAGCACAGCGCCGGAGAACGAGGCGTAAACACaccacagagagacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaca
>XM_034299618.1
AAATGCCGCCTCCCTTTGTGGTTTGGTTTGAGATACAAGATGGCTCCGGTGTTGGAGAAGAAGCTGCTGGGTGCAGCCGGGACAGAAGGCCACAACATGGACAACAGCGCCGAGGAGGATGAGGGACAAAACCTGTGGTCCTCGATCCTCAGCGAGGTGTCGACGCGATCCAGTACCAAACTGCCGTCTGGGAGGAACATCCTGCTCTTCGGTGACGATGGATCGGGGAAAACGACGCTGATGACCAAACTGCAGGGAGCGGAGCACAATAAGAAGGGCAGAGGACTGGAGTACCTGTACCTGAACGTGCACGATGAAGACAGAGACGACGTGACGCGCTGTAACGTGTGGATTCTGGACGGAGACGTTTATCACAAAGGCCTGCTGAAGTTTGCCGTGTGCTCCGAGTCTCTGAAGGACAGCGTGGCCGTGTTCGTGGTGGACATGTCCAGACCCTGGTCCATCATGGAGTCTCTGCAGAAGTGGACGAGTGTCCTGAGAGAACACGTGGACAAGCTGAAGATTCCTCCCGAGGACATGAGGGACATGGAGCAGAGGATGGTGAGGGCGTTTCAGGAGTATGCGGAGCCTGAGGAGGCGACTCCGTCCTCCCCTCAGAGACGAAGCGCTCCTGCAGGAGGAGATGACGAGTCAGTGGTGCTGCCGCTGGGAGAAAACGTCCTCACGCACAACCTGGGAATCCCCGTGCTGGTCGTCTGCACTAAGtgtgatGCTGTCACTGTGTTGGAGAAAGATCATGACTACAAAGAGGAGCATTTTGACTTCATTCAGTCGCACCTCAGGAGATTCTGCCTGCAGTATGGAGCTGCTCTGATCTACACGTCTGTAAAAGAGGAGAAGAACCTGGACCTTCTGTACAAGTACATGGTGCACAAACTGTACGACTTCCACTTCACCACACCGGCCTTAGTGGTGGAGAAAGACGCCGTGTTCATTCCGTCCGGGTGGGACAACGAGAAAAAAATCTCCATCTTACACGAAAACTTCACGACCGTCCGGCCGGAAGATCCGTTTGAGGATTTCATCATCAAGCCTCCAGTGCGCAAGttaGTGCACGATAAAGAGATAAACGCTGAAGATGAGCAGGTCTTCCTCATGAAGCAGCAGTCTTTGTTAGCCAAGCAGCCGGCCACTCCATCACGAGCAGCAgaatcTCCCGCGCGGACGGCGTCTGGTTCTCCTCGGCCCACTGTACGCACCGGACCCACCAACGTGGCGAGTGTGTCTCCCATGACGACCGTAAAGAAACCCGACCCCAACATGAAAGgagctGCTGCAAACGAGGGTGTTTTGGCGAACTTCTTTAACAGTCTGTTGAGTAAAAAGACCGGAGCGCCTGGAAGTCCGGGaacagcaggaacagcagtGCAGGGATCAGCCAAGaaaacagAAGCCGGCTCTGAGTGACGTGCAGGCTGAACTGGACCGCATGACGCACAAA

Function

symbol description
dync1li2 Predicted to enable dynein heavy chain binding activity. Acts upstream of or within regulation of metaphase plate congression; regulation of mitotic cell cycle, embryonic; and regulation of mitotic spindle organization. Predicted to be located in cytoplasm and microtubule. Predicted to be part of cytoplasmic dynein complex. Predicted to colocalize with centrosome. Orthologous to human DYNC1LI2 (dynein cytoplasmic 1 light intermediate chain 2).

NR:

description
cytoplasmic dynein 1 light intermediate chain 2-like isoform X3

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0007018 microtubule-based movement biological_process
GO:0005868 cytoplasmic dynein complex cellular_component
GO:0005525 GTP binding molecular_function
GO:0003777 microtubule motor activity molecular_function

KEGG:

id description
K10416 DYNC1LI, DNCLI; dynein light intermediate chain 1, cytosolic

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034299617.1 True 1599 mRNA 0.55 13 405979 420868
XM_034299618.1 False 1462 mRNA 0.55 13 405979 420736

Neighbor

gene id symbol gene type direction distance location
nae1 nae1,LOC107562208 coding upstream 29733 362885 ~ 376246 (+)
si:ch211-260e23.9 LOC108259284 coding upstream 67338 330987 ~ 338641 (+)
plekhf1 plekhf1 coding upstream 82649 320536 ~ 323330 (+)
LOC113525130 NA coding upstream 99216 299673 ~ 306763 (+)
tk2 tk2 coding downstream 45672 466540 ~ 476972 (+)
cdh11 cdh11 coding downstream 532337 953205 ~ 995231 (+)
cdh8 cdh8,LOC108259133,LOC107751507,LOC107591036,LOC107708568,LOC107655537,LOC107561036,LOC107660669 coding downstream 883013 1303881 ~ 1433318 (+)
LOC117596061 NA coding downstream 1469706 1890574 ~ 1904591 (+)
itfg1 itfg1,LOC103369364,LOC107395746 coding downstream 1599852 2020720 ~ 2174969 (+)
LOC117596071 NA non-coding upstream 5123 399347 ~ 400856 (+)
G358338 NA non-coding upstream 11358 391333 ~ 394621 (+)
G358312 NA non-coding upstream 119452 284243 ~ 286527 (+)
LOC113525132 NA non-coding upstream 131356 273454 ~ 274623 (+)
G358305 NA non-coding upstream 225829 179938 ~ 180150 (+)
G358359 NA non-coding downstream 64867 485735 ~ 487322 (+)
LOC117596049 NA non-coding downstream 124708 545576 ~ 548885 (+)
G358478 NA non-coding downstream 211620 632488 ~ 632693 (+)
G358508 NA non-coding downstream 456388 877256 ~ 914967 (+)
G358513 NA non-coding downstream 487628 908496 ~ 946514 (+)
ccne1 ccne1 other upstream 54210 344062 ~ 351769 (+)
cmtm4 cmtm4 other downstream 6005 426873 ~ 452014 (+)
c25h16orf87 c27h16orf87,cunh16orf87,clg02h16orf87,cssa11h16orf87,LOC103043940,LOC106587296 other downstream 1900256 2321124 ~ 2386730 (+)
igdcc4 LOC108259659 other downstream 2215421 2636289 ~ 2694287 (+)
cilp cilp,LOC107670750,LOC107750479,LOC107554910 other downstream 2364759 2785627 ~ 2823338 (+)
cebpa cebpa other downstream 2824842 3245710 ~ 3300683 (+)

Expression


Co-expression Network