LOC117596049


Basic Information

Item Value
gene id LOC117596049
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047619.1
NCBI id CM018565.1
chromosome length 19570078
location 545576 ~ 548885 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004577209.1
agtgtgtgtgtgtgtgtgtgtgtggttcagtgaGCCACAGGATGCTCGAGGAGGAAAAACgaacagagagaaggagagagagagagcgatggaTCTTAAAGAAGGATAAAAGAGAAGAGATGTTTGAGTCGACTCCTGCTCTGAACAGCTGGAATAAAGTGAAGGTTCAGACACAGGAAGTGAGCTGTAGATGAACAGGAAGTGGATGCTGACGTTGTGGAAATGGTGTATGGGTCTGGAGTGGTGTGATTAGCGCTGCGCTGATGAGATTAGCCGAGCGCTACCTTCTCTCAGCAGgacaaaaaaggacaaaagtaAATGAGTGAAGCTGCAGTTAATGACGAAGGGATGAAGAATAAACAATGTGTAACTCTGAATCAGGAAAATGACTAAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004577209.1 True 395 lncRNA 0.45 3 545576 548885

Neighbor

gene id symbol gene type direction distance location
tk2 tk2 coding upstream 68604 466540 ~ 476972 (+)
dync1li2 dync1li2,LOC107562216,LOC106561980 coding upstream 124708 405979 ~ 420868 (+)
nae1 nae1,LOC107562208 coding upstream 169330 362885 ~ 376246 (+)
si:ch211-260e23.9 LOC108259284 coding upstream 206935 330987 ~ 338641 (+)
plekhf1 plekhf1 coding upstream 222246 320536 ~ 323330 (+)
cdh11 cdh11 coding downstream 404320 953205 ~ 995231 (+)
cdh8 cdh8,LOC108259133,LOC107751507,LOC107591036,LOC107708568,LOC107655537,LOC107561036,LOC107660669 coding downstream 754996 1303881 ~ 1433318 (+)
LOC117596061 NA coding downstream 1341689 1890574 ~ 1904591 (+)
itfg1 itfg1,LOC103369364,LOC107395746 coding downstream 1471835 2020720 ~ 2174969 (+)
LOC113540805 neto2,LOC107757778,LOC107591032,LOC107660668,LOC107598688,LOC107723137 coding downstream 1629093 2177978 ~ 2203598 (+)
G358359 NA non-coding upstream 58254 485735 ~ 487322 (+)
G358331 NA non-coding upstream 109104 338823 ~ 436472 (+)
G358344 NA non-coding upstream 120933 379230 ~ 424643 (+)
LOC117596071 NA non-coding upstream 144720 399347 ~ 400856 (+)
G358338 NA non-coding upstream 150955 391333 ~ 394621 (+)
G358478 NA non-coding downstream 83603 632488 ~ 632693 (+)
G358508 NA non-coding downstream 328371 877256 ~ 914967 (+)
G358513 NA non-coding downstream 359611 908496 ~ 946514 (+)
G358515 NA non-coding downstream 377878 926763 ~ 928691 (+)
G358518 NA non-coding downstream 390351 939236 ~ 944022 (+)
cmtm4 cmtm4 other upstream 93562 426873 ~ 452014 (+)
ccne1 ccne1 other upstream 193807 344062 ~ 351769 (+)
c25h16orf87 c27h16orf87,cunh16orf87,clg02h16orf87,cssa11h16orf87,LOC103043940,LOC106587296 other downstream 1772239 2321124 ~ 2386730 (+)
igdcc4 LOC108259659 other downstream 2087404 2636289 ~ 2694287 (+)
cilp cilp,LOC107670750,LOC107750479,LOC107554910 other downstream 2236742 2785627 ~ 2823338 (+)
cebpa cebpa other downstream 2696825 3245710 ~ 3300683 (+)
cylda cyld,cylda,LOC107551493,LOC107657079 other downstream 3164767 3713652 ~ 3767714 (+)

Expression


Co-expression Network