Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC117596071 |
| gene name | NA |
| gene type | non-coding |
| species | striped catfish (Pangasianodon hypophthalmus) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_047619.1 |
| NCBI id | CM018565.1 |
| chromosome length | 19570078 |
| location | 399347 ~ 400856 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XR_004577246.1 | True | 1037 | lncRNA | 0.46 | 3 | 399347 | 400856 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| nae1 | nae1,LOC107562208 | coding | upstream | 23101 | 362885 ~ 376246 (+) |
| si:ch211-260e23.9 | LOC108259284 | coding | upstream | 60706 | 330987 ~ 338641 (+) |
| plekhf1 | plekhf1 | coding | upstream | 76017 | 320536 ~ 323330 (+) |
| LOC113525130 | NA | coding | upstream | 92584 | 299673 ~ 306763 (+) |
| dync1li2 | dync1li2,LOC107562216,LOC106561980 | coding | downstream | 5123 | 405979 ~ 420868 (+) |
| tk2 | tk2 | coding | downstream | 65684 | 466540 ~ 476972 (+) |
| cdh11 | cdh11 | coding | downstream | 552349 | 953205 ~ 995231 (+) |
| cdh8 | cdh8,LOC108259133,LOC107751507,LOC107591036,LOC107708568,LOC107655537,LOC107561036,LOC107660669 | coding | downstream | 903025 | 1303881 ~ 1433318 (+) |
| LOC117596061 | NA | coding | downstream | 1489718 | 1890574 ~ 1904591 (+) |
| G358338 | NA | non-coding | upstream | 4726 | 391333 ~ 394621 (+) |
| G358312 | NA | non-coding | upstream | 112820 | 284243 ~ 286527 (+) |
| LOC113525132 | NA | non-coding | upstream | 124724 | 273454 ~ 274623 (+) |
| G358305 | NA | non-coding | upstream | 219197 | 179938 ~ 180150 (+) |
| G358304 | NA | non-coding | upstream | 220033 | 179026 ~ 179314 (+) |
| G358359 | NA | non-coding | downstream | 84879 | 485735 ~ 487322 (+) |
| LOC117596049 | NA | non-coding | downstream | 144720 | 545576 ~ 548885 (+) |
| G358478 | NA | non-coding | downstream | 231632 | 632488 ~ 632693 (+) |
| G358508 | NA | non-coding | downstream | 476400 | 877256 ~ 914967 (+) |
| G358513 | NA | non-coding | downstream | 507640 | 908496 ~ 946514 (+) |
| ccne1 | ccne1 | other | upstream | 47578 | 344062 ~ 351769 (+) |
| cmtm4 | cmtm4 | other | downstream | 26017 | 426873 ~ 452014 (+) |
| c25h16orf87 | c27h16orf87,cunh16orf87,clg02h16orf87,cssa11h16orf87,LOC103043940,LOC106587296 | other | downstream | 1920268 | 2321124 ~ 2386730 (+) |
| igdcc4 | LOC108259659 | other | downstream | 2235433 | 2636289 ~ 2694287 (+) |
| cilp | cilp,LOC107670750,LOC107750479,LOC107554910 | other | downstream | 2384771 | 2785627 ~ 2823338 (+) |
| cebpa | cebpa | other | downstream | 2844854 | 3245710 ~ 3300683 (+) |
