pmm2 (pmm2,LOC107692644,LOC101469678,LOC102299325,LOC100707130,LOC102200931,LOC107082664)


Basic Information

Item Value
gene id pmm2
gene name pmm2,LOC107692644,LOC101469678,LOC102299325,LOC100707130,LOC102200931,LOC107082664
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 284863 ~ 289908 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU436801
TAGGGAGCAGGAAGTGATTCAGGAGTCGCTGCGGGTTCCGTGGACGTGTCGATTCCTTGCATCACTTCCTGCAGCCCGGCTCGctttaactttaataataataataataataataataacagcttaTAATCTGCTTGACAGGGTTTAATATCAGAGATGACGAGCTCAGGTGTGGACACGCAGACACTTTGTCTGTTTGATGTGGACGGAATTAAACGTCACGCTTACTGGAAACGCAGCTGACTCTGAACCTGGTGCTGGTGTTCACCTCCAGTTACTCCTTTAATCAAGTTTAaatctaatctctctctctctgcacaatGCACACACGCCGCGTTTCAGGAGACCTGGCGTTGAATCCGTGTGGAATTTTCTGTTACTAAAACAGTCCACAACGTCGCCGTCTGACTTCGTGTCACATTTTAATCCCTCAAATTGTTGTTTGGTCTTTTGGACTGATTTGGAAAAAGGACACAGTCGTGATCGTGCgtccgtctcacacacacagatttatagaaataaataaagtaaatgttcTCTCACATGCCGTATAGGCCACAAAGCACACGCTTGCAGTCAtacggtttaaaaaaaaagtttttttaattagaaatataagtgtacatataaaatgaaatcCTGGACTGCAACTATGACTAAATAATCagaacatatatataaaataatcagtatattgaataatcagtgtataaatataataataatgagtgtgtgtagatgtgattatggggtaatgtgtgtgtcagattttATCAGGTTTgggattttaataaatatattcaggaATGTTCTTTTGGCACGGAATACGTTGAGGACCTGGGGGTTTATGGGTttgggctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtcactgtagAACTCACTACAGCGGTGTGTCATTTTCTTGATGTCACGTGGAAGAGGAATCGAGTCGTTTGCTGCACGTCTGTTGTTGATTACTGTAagagtaaatgaatgaaacagtgTGATTTGTATTGAATTAAAgttattgttcttttttattttttcccctcaattaAATT
>XM_034300321.1
GAGGAAGCTCACTATGAAGTGCAGTAATGTAGGGAGCAGGAAGTGATTCAGGAGTCGCTGCGGGTTCCGTGGACGTGTCGATTCCTTGCATCACTTCCTGCAGCCCGGCTCGctttaactttaataataataataataataataataacagcttaTAATCTGCTTGACAGGGTTTAATATCAGAGATGACGAGCTCAGGTGTGGACACGCAGACACTTTGTCTGTTTGATGTGGACGGAACTTTAACAGCAGCtcgacagagagccACTCCACACATGCAGGAGTTCCTGAGTAAACTGAAACAGCGGGTACGAGTCGGAGTCGTCGGAGGTTCAGATCTGAATAAGATCAAGGAGCAGCTGGGTGAAGACGtaatCGAGCGAGTGGATTACGTTTTCGCTGAGAACGGTTTGGTGGCCTACAGATTCGGGCAGCTCCATTCTGTAcagAGTATTCAGGCGTATCTCGGGGAGGAGATTTTACAGGATTTCATTAACTTCTGTTTAGACTACATGGCCAAGATCAAACTGCCCAAGAAAAGAGGCACGTTTGTCGAGTTCAGGAACGGGATGCTGAACATCTCTCCTATCGGCCGGAGCTGCAGTCAGCAGGAGCGACTCGAGTTCTTCGAGCTGGATAAGAAAGAAAAGATCCGAGAGAAATTTGTGGCCGTTCTGAAAGAACAGTTCCGGGGGAGAGGACTGTCTTTCTCCAtcggagggCAGATCAGCTTCGACGTGTTTCCAGAAGGTTGGGATAAGCGTTATTGTTTGGGAATCGTAGAGAAGGACGTGTATCAGACCATCTATTTCTTCGGGGATAAAACTAAACCGGGAGGAAACGATTACGAGATCTACACAGACCCCCGAACCATCGGCCACGAGGTCACGTCACCCGAAGACACGCAGCGGATCTGCGAGGAGCTCTTCTTCAGCTGAGTTCTCTCCGAGTTCCTCCGCCGCACGAAGGAAGCGCGCTGAGGCTTCGTGACTTAAACGTCACGCTTACTGGAAACGCAGCTGACTCTGAACCTGGTGCTGGTGTTCACCTCCAGTTACTCCTTTAATCAAGTTTAaatctaatctctctctctctgcacaatGCACACACGCCGCGTTTCAGGAGACCTGGCGTTGAATCCGTGTGGAATTTTCTGTTACTAAAACAGTCCACAACGTCGCCGTCTGACTTCGTGTCACATTTTAATCCCTCAAATTGTTGTTTGGTCTTTTGGACTGATTTGGAAAAAGGACACAGTCGTGATCGTGCgtccgtctcacacacacagatttatagaaataaataaagtaaatgttcTCTCACATGCCGTATAGGCCACAAAGCACACGCTTGCAGTCAtacggtttaaaaaaaaagtttttttaattagaaatataagtgtacatataaaatgaaatcCTGGACTGCAACTATGACTAAATAATCagaacatatatataaaataatcagtatattgaataatcagtgtataaatataataataatgagtgtgtgtagatgtgattatggggtaatgtgtgtgtcagattttATCAGGTTTgggattttaataaatatattcaggaATGTTCTTTTGGCACGGAATACGTTGAGGACCTGGGGGTTTATGGGTttgggctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtcactgtagAACTCACTACAGCGGTGTGTCATTTTCTTGATGTCACGTGGAAGAGGAATCGAGTCGTTTGCTGCACGTCTGTTGTTGATTACTGTAagagtaaatgaatgaaacagtgTGATTTGTATTGAATTAAAgttattgttcttttttattttttcccctcaattaAATTTTCAGGTGATAAAACTCA

Function

symbol description
pmm2 Predicted to enable phosphomannomutase activity. Acts upstream of or within neurogenesis; protein N-linked glycosylation; and skeletal system development. Predicted to be located in cytoplasm. Predicted to be active in cytosol. Is expressed in several structures, including axis; digestive system; hatching gland; periderm; and polster. Used to study congenital disorder of glycosylation type I. Human ortholog(s) of this gene implicated in congenital disorder of glycosylation and congenital disorder of glycosylation Ia. Orthologous to human PMM2 (phosphomannomutase 2).

NR:

description
PREDICTED: phosphomannomutase 2 isoform X2

GO:

id name namespace
GO:0019307 mannose biosynthetic process biological_process
GO:0006487 protein N-linked glycosylation biological_process
GO:0090171 chondrocyte morphogenesis biological_process
GO:0022008 neurogenesis biological_process
GO:0048701 embryonic cranial skeleton morphogenesis biological_process
GO:0005737 cytoplasm cellular_component
GO:0004615 phosphomannomutase activity molecular_function

KEGG:

id description
K17497 PMM; phosphomannomutase

RNA

RNA id representative length rna type GC content exon number start site end site
TU436801 False 1086 lncRNA 0.39 2 284881 289879
XM_034300321.1 True 1884 mRNA 0.44 8 284863 289908

Neighbor

gene id symbol gene type direction distance location
rgs11 rgs11 coding downstream 7180 262153 ~ 277683 (-)
percc1 LOC108258685 coding downstream 40689 234899 ~ 244174 (-)
pdia2 LOC108258683 coding downstream 49887 228448 ~ 234976 (-)
rnf175 rnf175,LOC107665971,LOC107692639,LOC107714147 coding downstream 122882 154481 ~ 161981 (-)
fgb fgb,LOC107758871 coding downstream 154502 125530 ~ 130361 (-)
elfn1b elfn1b,LOC108258545,LOC108439159,LOC107722936,LOC107590768,LOC107702506,LOC107714143 coding upstream 62545 352453 ~ 408289 (-)
uncx4.1 LOC108258667 coding upstream 228696 518604 ~ 525065 (-)
chtf18 chtf18,LOC107725360 coding upstream 254350 544258 ~ 558212 (-)
plk1 plk1,LOC107722962,LOC107702528 coding upstream 292590 582498 ~ 589396 (-)
LOC113535779 cacng3,LOC108258515,LOC108439097 coding upstream 355568 645476 ~ 651428 (-)
G368725 NA non-coding downstream 2960 281439 ~ 281903 (-)
G368713 NA non-coding downstream 40083 244177 ~ 244780 (-)
G368689 NA non-coding downstream 90949 185834 ~ 193914 (-)
G368685 NA non-coding downstream 100217 179182 ~ 184646 (-)
G368903 NA non-coding upstream 288685 578593 ~ 581860 (-)
G368912 NA non-coding upstream 381732 671640 ~ 673030 (-)
G368944 NA non-coding upstream 411176 701084 ~ 701288 (-)
G369130 NA non-coding upstream 581681 871589 ~ 875203 (-)
LOC117596193 NA non-coding upstream 976798 1266706 ~ 1270425 (-)
si:dkeyp-75b4.8 NA other downstream 57761 202654 ~ 227102 (-)
rasd3 LOC108258668 other upstream 301228 591136 ~ 592595 (-)
prkcba prkcb other upstream 363545 653453 ~ 702345 (-)
zgc:77849 zgc:77849,LOC108258689,LOC103038624,LOC108439082,LOC107722949,LOC107692663,LOC107590708 other upstream 579851 869759 ~ 948803 (-)
G369125 actb other upstream 621645 911553 ~ 915683 (-)
G369242 LOC108258881 other upstream 986113 1276021 ~ 1276813 (-)

Expression


Co-expression Network