XLOC_000583


Basic Information

Item Value
gene id XLOC_000583
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 46249979 ~ 46251824 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00001012
caaacacaaaatgtatccatataaatgtgttaaaaattaaCACCGTTTAAAAACCTCATCAACCTTTCGTTCCGGCGTCTTTTGATGGCCTTTAATTAGAGGGTTAAAGCTTCCAAACTCCACCCGGTTTATAGGGCCAGTCTGCGGAGTAATTAGCGAGGCTGGTTGGGGAGGGCTGAGGAAAACAATCGCCCCTGCTGTCTGCTCAAGTTCGGGCCTGCTGAACTGACTTAATTGGCCGTGTAATAATGTCGACCTGAGGAGAGCTTGCGTGAAAGGGCTGTCCCGGTTCCCACAAACCCAGGGCCAGCGCCAATCCAACCCCGCGCTGAAAGACTGACGGGAAGAAAAGCGACACCGCACAATGAAAGGCCTCGGCCGGGCGGGTGAAGGATTTCTCCGTCTAATTAGACGCGCCCTGTTTCCAGAGCCACACACCGCCCAGCGGGCCTGCTGCGCCTGGCCATGCGGAGCTCCGCGGGTAGCCAAGCTTAGACCGGCCGCTGATTAGGACATCTCTCATGCTGGAGCAGAGCGTCCTCCACTGGCTGCGCTGGAAAACAAATGCAGACTGGAGGAGAAGCCGCCTGTTAGTTCAATCATTTGTCAGATCAATAACAGGTAATTATGTGTTATAATGCAGCTTGTGGAGGCCTGTGTTTCTCCCAGGTGCATATACAACACTgtcaacacaaactgctgctatAGACAGCTTTAAATAACAGCGCCTGTCAAAAATGAATCCATTTTATTAGGACTTTGAAAGAAATGATTATAATCTGAAAATGCCATTCAACTAAAAGAGCCAGAGCTACCTGTTGTGTTTATTCCTAACGCTCCTCCTGCTGGGTTTCATTTCTATATTGGTCTTTAGAAGCACTTATTTTTACCCTTTAATTTGATCAATATAATAAAGCAAG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00001012 True 920 lncRNA 0.48 2 46249979 46251824

Neighbor

gene id symbol gene type direction distance location
XLOC_000582 NA coding upstream 1388 46247618 ~ 46248591 (+)
XLOC_000581 NA coding upstream 30818 46217503 ~ 46219161 (+)
XLOC_000580 sox1b coding upstream 53872 46194333 ~ 46196107 (+)
XLOC_000579 NA coding upstream 96779 46032720 ~ 46153200 (+)
XLOC_000578 si:ch211-138g9.2 coding upstream 219402 46026457 ~ 46030577 (+)
XLOC_000584 NA coding downstream 11627 46263451 ~ 46272326 (+)
XLOC_000585 NA coding downstream 55191 46307015 ~ 46307550 (+)
XLOC_000586 BX465849.1 coding downstream 148788 46400612 ~ 46401636 (+)
XLOC_000587 tubgcp3 coding downstream 153144 46404968 ~ 46452686 (+)
XLOC_000588 mcf2la coding downstream 242120 46493944 ~ 46594288 (+)
XLOC_000575 NA non-coding upstream 380482 45867040 ~ 45869497 (+)
XLOC_000573 BX511120.1 non-coding upstream 481449 45768416 ~ 45768530 (+)
XLOC_000591 NA non-coding downstream 467272 46719096 ~ 46726957 (+)
XLOC_000592 NA non-coding downstream 483904 46735728 ~ 46736116 (+)

Expression


Co-expression Network