AMCG00000280


Basic Information

Item Value
gene id AMCG00000280
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 9557518 ~ 9560476 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000280
CCGGACAGCATGAGGAACGGCGAGTTTGACTCCTCTGATGAAGAGGACAGCGCGGAGGAGCAGCAGACGCCTCTTCAAATCTCCTGGTTATCCCTGTCCGTTGTGGACTGCCCCCAGTTCATAGGAATCTGTGCTCTGCCAGGATGtaaatataaagatgtgagaAGAAACCTGCAGAAAGATATAGGAGAGCTGCAGGGGCAGGGTGTGGAGGAGGTGTTTGTGTTCTGCACCCGCGGGGAGCTCCACAAGTACCGCGTCCCCCACCTCCTCGAGGCCTACTGCCAGCAAGGCCTGATAGTGCATCACCTGCCCTTTCCAGATGGGGGCGCCCCGGAGCTGGAGCATTGCTGCCAGATCCTAGACTTGCTGCAGTCCAGCCTGCGGAGCAACAGGAGGACAGTCATACACTGCTATGGAGGTCTGGGTCGCTCTGGCTTGATGGCTGCCTGcctcctgctccagctgtctgACTCCATGATCCCTGATAAGGCCATCGACATCCTCAGGGAGCTGCGAGGATCTGGAGCTATACAGACAGTCAAGcaATACAACTTTTTGCACGAATTCCGTGAAAGATTGGCAGCCCACCAAGCCAACAAAGAAGCCTCCTCTGACAGATCTGTGTCACGCTGAACATCCCTCTCTCTGCGTTGATGGTGTGCAGCagccagtgtgtgtttgtatgggtGCCTGTGGGGTTTACGATCCATCTTGATTCAATGTACATAGGTTACATTCCAGTTTGTTTGATAAATGATCTAGTCAACCAgtaatcataattttaattatttttgtaaatggaTAATATAATGCGGATGAGTTTAAAATTCAGTACATGTTGCATGCACTTTCTTGCTTACAGCactttacttttttatgttttacaaacTTTGCTAtatgatatttgttttgtttcttataaTGATTGTAAATCATGGCTGtatgtttaattataatatatgcCCATGAAAAACGTGGTGTGTTTGGTAATATCTGAGtaattttgtacttttaatGACTCGGAGTCCCTAACATAACAGTCAAACACATTAACCAATCAGTGACCCTAACTGTGCACTACATTTC

Function

GO:

id name namespace
GO:0035335 peptidyl-tyrosine dephosphorylation biological_process
GO:0016310 phosphorylation biological_process
GO:0016301 kinase activity molecular_function
GO:0004725 protein tyrosine phosphatase activity molecular_function

KEGG:

id description
K14167 CDKN3, KAP; cyclin-dependent kinase inhibitor 3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000280 True 1089 mRNA 0.47 7 9557518 9560476

Neighbor

gene id symbol gene type direction distance location
AMCG00000288 l2hgdh coding upstream 48594 9501693 ~ 9508924 (+)
AMCG00000287 cdkl1 coding upstream 56150 9487917 ~ 9501368 (+)
AMCG00000277 LOC106517965,LOC107602930 coding upstream 129976 9414677 ~ 9427542 (+)
AMCG00000278 NA coding upstream 145186 9378563 ~ 9412332 (+)
AMCG00000274 pygl,LOC104938237 coding upstream 194084 9355981 ~ 9363434 (+)
AMCG00000283 NA coding downstream 128271 9688747 ~ 9705449 (+)
AMCG00000282 NA coding downstream 161414 9721890 ~ 9747008 (+)
AMCG00000293 NA coding downstream 267613 9828089 ~ 9840429 (+)
AMCG00000294 smoc1 coding downstream 304511 9864987 ~ 9876944 (+)
AMCG00000292 NA coding downstream 350660 9911136 ~ 9920082 (+)
G149253 NA non-coding upstream 272367 9280063 ~ 9285151 (+)
G149172 psmc6 non-coding upstream 541367 9013371 ~ 9016151 (+)
G149059 NA non-coding upstream 883732 8668980 ~ 8673786 (+)
G149056 NA non-coding upstream 972551 8584488 ~ 8584967 (+)
G149055 NA non-coding upstream 973511 8583648 ~ 8584007 (+)
G149359 LOC103376870 non-coding downstream 159471 9719947 ~ 9776988 (+)
G149416 slc39a9,LOC107721951,LOC107664419 non-coding downstream 397237 9957713 ~ 9962571 (+)
G149415 NA non-coding downstream 412572 9973048 ~ 9975172 (+)
G149450 NA non-coding downstream 460946 10021422 ~ 10021853 (+)
G149454 NA non-coding downstream 469218 10029694 ~ 10030786 (+)
AMCG00000286 sos2 other upstream 11107 9514822 ~ 9546411 (+)
AMCG00000285 map4k5 other upstream 70829 9440061 ~ 9486689 (+)
AMCG00000249 acta1,actc1,LOC103383882,LOC105024319 other upstream 972245 8579717 ~ 8585273 (+)
AMCG00000251 NA other upstream 982394 8572936 ~ 8575124 (+)
AMCG00000217 gpx2 other upstream 2194811 7359278 ~ 7362707 (+)
AMCG00000281 cpsf2,LOC106608196 other downstream 1081 9561557 ~ 9591088 (+)
G149424 NA other downstream 408848 9969324 ~ 9970801 (+)
G149525 LOC100846954,LOC107575789 other downstream 974114 10534590 ~ 10535137 (+)
AMCG00000352 NA other downstream 2405079 11965555 ~ 11995026 (+)
G149859 NA other downstream 3119194 12679670 ~ 12727903 (+)

Expression


Co-expression Network