AMCG00000281 (cpsf2,LOC106608196)


Basic Information

Item Value
gene id AMCG00000281
gene name cpsf2,LOC106608196
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 9561557 ~ 9591088 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000281
ATGTTGACCCAGTGCTCGCGTAGGATTTTTGCGAAATTCACCATGGTGCCTAGGAGAGAGGACATAAAGAAGGTGTTATTGACATCAGGCACAATGACATCCATCATCAAGCTGACGGCGATTTCGGGGGTGCAGGAGGAGTCGGCGCTGTGCTACCTGCTGCAGGTGGACGAGTTTCGCTTCCTGCTGGACTGCGGCTGGGATGAGAGCTTCTCCATGGACATCATCGACGCAATGAAGAGACACGTTCACCAGGTGGATGCAGTCCTCCTCTCTCATCCCGACCCTCTTCACCTCGGAGCCCTTCCTTATGCTGTGGGCAAACTGGGCCTGAATTGCACTATTTATGCCACCATTCCTGTGTACAAAATGGGGCAGATGTTTATGTATGATCTATATCAGtCTCGACACAACACTGAAGACTTCTCCTTGTTTACCCTGGATGATGTAGACTCAGCTTTtgacaaaatacagcagctaAAGTATTCCCAGATTGTCAACTTGAAAGGGAAAGGACATGGCTTGTCTATAACACCTCTTCCAGCTGGTCACATGATTGGAGGAACAATCTGGAAGATTGTGAAGGATGGGGAGGAGGAGATTGTGTATGCAGTAGACTTCAACCACAAGAGGGAAATCCATTTGAATGGGTGTTCTTTGGAAATGGTGAATCGGCCATCCCTACTCATCACGGATTCCTTCAATGCTACTTATGTGCAACCTAGGAGAAAACAGCGGGATGAGCAGTTACTAACTAATGTGATGGAGACGCTGAGGGGCGATGGCAATGTGCTGATCGCGGTGGACACAGCGGGGAGAGTGCTGGAACTGGCTCAGCTCTTGGATCAGATCTGGAGGACTAAGGATGCCGGGCTGGGGGTCTATTCTCTTGCCTTGCTCAATAACGACAAGAGGAACAACCCCTTCCAATTCCGCCACCTCTCACTGTGCCACAGCCTCTCGGATCTGGCCCGAGTTCCCAGCCCCAAAGTCGTCCTGGCCAGCCAGCCAGACCTGGAGTCGGGCTTCTCTCGTGAGCTCTTCATTCAGTGGAGCCGGGACCCCAAGAACTCTGTCATCCTGACTTACAGGACCACCCCTGGCACCCTGGGGAGGGTGGATGTGGACTCCAGTGATGAGAGTGACATGGAGGAGGATCTGGAGCAGCCCACCATTGGCAAGGCCAAGCACCACGACCTCATGATGAAGGGCGAGGGCAATCGGAAGGGCAGCTTCTTCAAGCAGGCCAAGAAATCCTACCCTATGTTCCCCACCCATGAAGAAAGAATCAAATGGGATGAATATGGGGAAATTATCAGGCCGGAGGAATTTCTTGTCCCTGAATTACAAGCCACCGAAGAAGAGAAGAACAAACTGGAATTGGGGATGACCAATGGAGAGGAGCCTATGGACCAAGACCTGTCAGATGTGCCCACAAAGTGCATTTCATGTACAGAAACCATCGAAATCAAAGCAAGAATTACCTACATAGACTATGAAGGCCGATCAGACGgggattcaattaaaaagattataaatCAGATGAAACCGCGACAGCTAGTGATCGTGCACGGCCCTCCAGAAGCCAGCCAGGACCTTGCCGAATCGTGCAAGTCTTTCAGTGGGAAGGAAATTAAGATTTACACCCCCAAGCTACAGGAAACCGTGGATGCCACCAGTGAGACGCATATCTACCAAGTCAGACTGAAGGATTCCCTGGTAAGCTCACTGCAGTTCTGCAGAGCCAAAGACACTGAGCTGGCCTGGATTGACGGGGTGCTGGACATGAGGGTCATCAAAGTGGACACTGGAGTGATCATTGAAGAGGGGGACATCAAAGAGGACACTGAAGATGGGGAGCTGCCCATGGAAATTCCCTGCGCCTCGtccttgacctctgaccccagtGCCATCGCGCAGCAGAAAGTGATCAAGACGCTCTTTGGGGATGATGAGAAGGAAGTGTCAGAAGAGAATGATATCATTCCTACCTTGGAGCCCCTGCCCTCGAATGAAATTCCAGGGCACCAGGCAGTTTTTATTAACGAACCCAGGCTATCGGATTTCAAGCAAGTGTTGTTACGCGAGGGAATTCAGGCCGAGTTTGTAGGGGGAGTCCTCGTGTGCAACAACCTGGTAGCCGTTCGCAGGACTGAAGCTGGGCGAATAGGCTTAGAAGGATGCCACTGCGAGGATTATTATAAAATCAGAGAGCTGCTTTACCAGCAATATGCAGTTGTTTAACAACAATGATTAATGctgaaattgacttttttttcctaaagGATTGTTATGttcaatactgttttttttgttttttgtttctacaGTGGCAGGCTACATACCTGTTGAATTATTTGACTTGTAACAAGCCAGAATTACAGTGGTTTAGATACTCAGTGAAGTGCATTCTTTTGGCAGAAGTCAAATTGAATAAAACTTGTatgtaaattgtttaatattcttaaaaaaaacaatcataattgAGAGTGTCTGCATGGTGtgaatgttttatacacatgaTTAAATTTTTTAAGATCAACATTTATCACTAAGTCagacaaaacatacaaacactttAGCTGTTAAATTCCATCTTTATTTGGGGGTgcacattaaacatatttttatccTCTTAAGTGTAATATCCCAAAGTCACATTAAAACAGCACTGATGGTGTGGTCAACAGCCTGCTGTGTCATCAGAGAGagttgtattttgaaatgcaaggaAACCAAgggaatttaaaatacaaactattCAGTTCTGAATCGAATCACATGCTCTGTATTGGTGTAAATCCTCATTACTGTTTTATTGCTGAGGTTAATAATGAGGCATAATGTCCTTATTATTCATACAACTCTGCAGCAGCTATGCTTTGCTATCAGTATTGCTTCTGTTTATTTCCATTCAGTGCAAAAGTGTCTTATGGCAGTCATCTCTCCAAACATCTTCAAATTGTGACTTGCGTTTTGTTCTAAGATTTTATATATGTCCAGTTTCGGTATTccgttttacattttgtgttgaatTTTGTGTCGCCACATTTTACTTAGGAATCAGataatgtgtttgaaatgtatgtgaCTGATGGCTACAATGTGTAGCAATTAATGCCAGCAGAATAGTTGAATGGAGTTTTGACAACCAATAGAGTCAGATTTTTCAGGGTCATGGGACAGAACTGACAGAAAATCTTCCTTAACAATCAGTTgttaattgtttgtgtctttggaatatgttttattaattgacaGAGgtgttaactttttttttttttatcctgttcATGTATTCAGTTATAGTAGGCAATACTCACaccattcatttaaaaaaagtgttattctGTGATCCTTTTAGTTTaacaaatattgttaattaaaatacacgTAGTTATGAAGAGAGAACGCAAAGGAATTTTAGGTgattaaatccaaactttgGATGACTGCTCCATTGATTTCTACATTGTTTTAGCAGTGGATTGACAAACGTTATTGTAAAGGGAAGGTAAACTGTTGGTACAATATGCTGATGATCAATATAGTCAATATAAGGCAATACAGC
>TU187924
CATAAtctaatttaacatttaataaaatctgtattacattatgtattcaattatgCATTGGGAAGTTTACAGGCAACAATAGAGCTTCACAGAATGTATATGGCAATAAAGTTCAAAGGAAGAAATTACTGATTCAAGGCTGGACCTAATGTAATTACTACTGCTGTGAACTGGACAGCGCCAAAACCAGATGCTGTTATTCATTTCATCTGTGCTAGGAAGGTACAGCTTTCTGCACTGCCAGCATCCAAACAAGCctgagaaatatataaattttaCAAGCAATAGGAGGAGTGTTCACAGacccaaaacaaacatattcatGTTCAAagttttatgaaagaaaaacaggactataaaataataatctgaaatgaCTGTATCTTCACACACATTGTTTCtattactaaaacaaaactaccCTGGATGTCAGATGCAAGTGCAGTATTTTAGTTGTATGTACACAGGTGCCCAAGGTTTCTTTCTGCAAAGGTACATTCATTGGCTCAGATTGATTGAAATTAGTAGGTCCTGAGATTGGAAGGGCAAAATGGGACCCGATGGCTTTGAGACCCGAATGAATGATAGTGTTTTTCAGGAAATGGGATGTCCTGTACAACTGTTTAGTTTTATTGACCAGTACAGATCGAACCACACAATTGCAACAGGCAACCATTCCGTAGTGTGTTGTTTAGGATGAAAAGTCAATATGCCAGTTTGGTAGTGCAACATATCTGTATCCCCCCTCACCACCCCCAGTCCAAAATTTTGACAGTCCATTTTTGTGGGGCTGActtgtatatataaagtaaattaacttatttatggATATTTCAGCAGGCTTATTTCACTGAAGACAAGTGCAAACTGAAGTCACTGTGGTAGAATGTATAACATGTTTGGAACTCTTCCAAATAACAGTGTCATCTATAAAAATCTTTACTGATTGTTTTCTGCAGCAGGGTATGAAATTAATAtaacatgatttttttaatgaataatggTTTGCTGATCAGTTGAAAAgctccattcatttattttaaataatgaactaATCACAATTTCAAAACGGGGACAAATCTAAAGGGACTACCCattggaaatgttttatatttcaattaaatctaaACATCTTCAGCTGAACCTTAACATCCCGAATCAATTTCACTAAACCGCTcggagcaaaaaaaaaattcttaatAAAACCCTTTAAAGCAAAGCACTTTatgtaatgaaaaagaaaatgaaattgcaCCAGATTCacaaagttttagttttttggcatACATTTTTCGTGTTATCCAAACCTCGTAGATACAGTCAGTTCAGTTTagtaaacataaaaacataaaaaaagaattgtGTGCTTGGAGTTTTATGACAGACAACTGTTGCAGTATTGATCTATAGCTACTTATTTGCTTAAATGTAACTAAGCAAGAAAAAGTCCCTATGCTGTTTTGTAAACAAAGTACAATAGAAATCAACAACTTATTTCAATAAGGGAGAAAATCATTGACTGTGATGTTTCCCCTCCCATCAAATCAACAATCTTCTAAGAGCAAACAGTCCTGGTTTAGCTGGTTGTCTTCTCGGCTGTAATTACTAATAGAAAGGATAAAATTGAGGCAGAAAGATTTTTAAAGGGATGACCTTTGCAGTGTGATGCTCAAGATTAAGTGGGGTTGAGTATtaatccttgtttttttttttttttttggataaagtacatttatttttcctgatgtTGGTCATTCCAATACAGACCTCACACAAAGTCACCAGATAAACATGTAGACCGAACCCTGTACAGTATCACAACTGGATAGATATTCCTGTAAAAATgacttaaatatttgttatggatttatttgtttttcttgatagAAGACATTTACTTCCAGGTTACTTCCTCTCCTGGTTTCAGTTCCCTTTGTACAACAAGCTCTTATTTCTGAAAGCTGTGAGTTTGGCATCATTTCTTCGGTCCATATAAACCCCAATCACAAAGCCAAGAGGGACAAGGATGTTGACCCAGTGCTCGCGTAGGATTTTTGCGAAATTCACCATGGTGCCTAGGAGAGAGGACATAAGTACGTACAGATTCATGTTTCGGCTGCGCGACGTTCCTTCAGCAGCGTTTCACAGCATCCAAAATCCTGGATTAGAAGAGTTTAATCATACCTTGAAAGCAGGGATGTGGTAATATGTCTAAGAATAATGTAGATAGGTAGCCTTGTTAATGGATGCTGATGCTATGGTTCAGATACTGCCACACCAAATCTGCctacagtaaaatgtgtttaggTCTTACCACCTTTATGTGAGGGTGGTAATGCTATGTGTGGATTGGAAAACTTGGCATATTTTTACAATGCTCATCTTTGAGATTAATAATTGAG

Function

symbol description
cpsf2 Predicted to enable RNA binding activity. Predicted to be involved in mRNA 3'-end processing by stem-loop binding activity and cleavage; mRNA polyadenylation; and pre-mRNA cleavage required for polyadenylation. Predicted to act upstream of or within mRNA cleavage and mRNA processing. Predicted to be located in nucleus. Predicted to be part of mRNA cleavage and polyadenylation specificity factor complex. Orthologous to human CPSF2 (cleavage and polyadenylation specific factor 2).

NR:

description
PREDICTED: cleavage and polyadenylation specificity factor subunit 2

GO:

id name namespace
GO:0006378 mRNA polyadenylation biological_process
GO:0006379 mRNA cleavage biological_process
GO:0005847 mRNA cleavage and polyadenylation specificity factor complex cellular_component
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
K14402 CPSF2, CFT2; cleavage and polyadenylation specificity factor subunit 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000281 True 3571 mRNA 0.44 14 9573189 9591088
TU187924 False 2402 lncRNA 0.36 3 9561557 9573564

Neighbor

gene id symbol gene type direction distance location
AMCG00000280 NA coding upstream 1081 9557518 ~ 9560476 (+)
AMCG00000288 l2hgdh coding upstream 52633 9501693 ~ 9508924 (+)
AMCG00000287 cdkl1 coding upstream 60189 9487917 ~ 9501368 (+)
AMCG00000277 LOC106517965,LOC107602930 coding upstream 134015 9414677 ~ 9427542 (+)
AMCG00000278 NA coding upstream 149225 9378563 ~ 9412332 (+)
AMCG00000283 NA coding downstream 97659 9688747 ~ 9705449 (+)
AMCG00000282 NA coding downstream 130802 9721890 ~ 9747008 (+)
AMCG00000293 NA coding downstream 237001 9828089 ~ 9840429 (+)
AMCG00000294 smoc1 coding downstream 273899 9864987 ~ 9876944 (+)
AMCG00000292 NA coding downstream 320048 9911136 ~ 9920082 (+)
G149253 NA non-coding upstream 276406 9280063 ~ 9285151 (+)
G149172 psmc6 non-coding upstream 545406 9013371 ~ 9016151 (+)
G149059 NA non-coding upstream 887771 8668980 ~ 8673786 (+)
G149056 NA non-coding upstream 976590 8584488 ~ 8584967 (+)
G149055 NA non-coding upstream 977550 8583648 ~ 8584007 (+)
G149359 LOC103376870 non-coding downstream 128859 9719947 ~ 9776988 (+)
G149416 slc39a9,LOC107721951,LOC107664419 non-coding downstream 366625 9957713 ~ 9962571 (+)
G149415 NA non-coding downstream 381960 9973048 ~ 9975172 (+)
G149450 NA non-coding downstream 430334 10021422 ~ 10021853 (+)
G149454 NA non-coding downstream 438606 10029694 ~ 10030786 (+)
AMCG00000286 sos2 other upstream 15146 9514822 ~ 9546411 (+)
AMCG00000285 map4k5 other upstream 74868 9440061 ~ 9486689 (+)
AMCG00000249 acta1,actc1,LOC103383882,LOC105024319 other upstream 976284 8579717 ~ 8585273 (+)
AMCG00000251 NA other upstream 986433 8572936 ~ 8575124 (+)
AMCG00000217 gpx2 other upstream 2198850 7359278 ~ 7362707 (+)
G149424 NA other downstream 378236 9969324 ~ 9970801 (+)
G149525 LOC100846954,LOC107575789 other downstream 943502 10534590 ~ 10535137 (+)
AMCG00000352 NA other downstream 2374467 11965555 ~ 11995026 (+)
G149859 NA other downstream 3088582 12679670 ~ 12727903 (+)
AMCG00000381 NA other downstream 3375789 12966877 ~ 13030853 (+)

Expression


Co-expression Network