AMCG00000282


Basic Information

Item Value
gene id AMCG00000282
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 9721890 ~ 9747008 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000282
gagcaaaatgagagagagagagagagagagagagagagagagagcgctctGTACAGACTTTCCTGCTCTTAActtttctcccctccctctttccATGGTCCACTCCCATCTGCCACACTGAGAAGTTTTTCTCACAGATGCACATCTAAACCATAGCCGTACAGAGAGCAAAGATGGAGAGGGAACCCTGGCTGAGAGAAGGGCGCAGGGGGTGAATCTCGCCTGATGCATCGAAGTCTTGATGGGCTGAGAAGAGTTGCAGAAGCCCTGAGCCCCCATCTGAAGCACCGTAATGATGAAAACATCTGAACTTCCACAGGAAGCTGGATGCTCTCCTGGGGTTGTCCCAGACCCCAACACCAAGGGCAATGAACCCACCTCTCCCCTCAGGAGTCAGCTAGTTCTGCCTGGCATCAGCATCCTAGAGAAACTCATCAAGACCTGTCCAGTTTGGCTCCAGCTTGGCATTAGCACGGAGCGGGCATCTGAAATCCTGCAGAGAGAACCACCAGGGATATTCCTGGTGAAGAAGAATTCAAGTCTGAAGAAAATGGTGCTTTCGGTTAGTTTCCCAGACCGAGCCGGAGAGCCGCACGTACAGGATGTTCTGATCAAGGAGGAAAAAACATACGTACTCCCTTTCACATTGAAGCTGCCCCAAGTTATCATTGAGGCAACAAAATATGAAGATATGGAGATGATTTCTAACCTGGGCTCAGATTTCTGGGGTTCGTCTCTGAACAGAAGACTGGATGCTGTCAAGGTTCGTAATCAGGGCAGCAGCGGTGGTGTCTCGAGAGTGGGGCAGAACTTCCAGACCGATGCAAGCCAATGCTCATGTGAGATTGAGCTGTCAATAGGAAATGACAGGCTGTGGTACGTCAACCCTATTTTTATCGAAGAGTATTGCAACAGCCTGCCTTCAGCTGCTCCTATAACCAGAAGCCAGAGTCTGATCACTCCCAATGCTGCACAACCCAGATACAAGAGGCCACCTCCCATTCCTCCTCGACCTCATACAGCAGAGGACTTGTTCGCAGGAGCAAAGGAAGCTAAGGACAAGGCTGTTGACATACCTCGCTCAAAAAACCAAGAGATAAAAGCGGGACAAACAGAGGAAGGAAGCAGTGGAtcgaccaaactcccagctccTAAACCTGAATGCATCACGGACCAATCCAAAGCCCCCAAGAATGTCCGCATCCCTCCAGTCCCCCCCAGGAGGAGGCTGTCCGAGAAGATGTCTGAAGAGTCTGTGAAGAAAGAAGAAGTTGCTTCGGAGGTGAAAAAGCATGCAGACACAGTGCCTGTTGCCACTCTAATCTGCATCGAGGACACCCCAGTGGCTGAGACAACCTCAGAGAAAGCCCCAACGGCGGGTATGCCGATCATTGAGGAAACAAAAACCATAACCCCGGGAACTGAAAGCCCAGCACACGTTCCAGGTCCCTTGTTAACGGTAAAAAAGATGGCACCCATTCCCCCGCCACGGAAGAAGAGATTGTCTCAGGTGACGCCTAAGCCAGAATCTCTGGAAGTCAAAGAACTTGTGAGTTTGAACTCCACGGCAACTCCTAGGACCGAGCCCGTCGTTTCTCCTCAGACCTCCAGCACGCCCACCTCTGTACGCCGATCTCTGAACTCTGTGGAGCTCAAGGACTGTGACGTGTCTCTGTACTCACCTGACGGAAACCTCACCGCTATTTTGGACCACGACTCGTACTCCACCAGCAGTACAGAAGAGGAAGCAGATGTCGTGGGTAGTTCTGCCTGCACCGTGAAGAGACACCCCACCATCATGCTAGACAAAGCCAAGCAGCGGCTGTCTATGGTCAACCTCTCGCACATGTTCACGGGCTTTATGTGCACTGACAGGAAGCTGCAGAAAAAGATTGTGGAGCTGGCGAAAGACAAGGACTCTTACTTTGGGAACCTAGTGAGGGACTACAAAACCTTCACCCTGGAGACCATGAAGAAGCATTCCTCCAGCACGGAGATGCTGCAGGAGATCCGCCAGATGATGACTCAGCTCAAGAGCTACTTAATACAAAGCGCTGAATTACAGGGACTAGTGGAGCCCATTGTCTACACAGATGAAAAACTagAAGCCATTATTGAGGCAGCGCTGTGCAAAAGTGTCCTGAAACCACTACGGGAGGCGATCTACACTGAGCTGAAGGAAATCCATACGAAAGACTCGTCTCTGAAAATGCTCAAGGACAACCAGAATGTCGTCCttcacaccaccaccaccgacCTGGGGGTGACCACCAGTGTCCCTGAGGCCCCCATCATGGAAAAGATCCAACTGAAGTTCACAAACCTACACAAGGAGTACTCCCCGGAGAAGAAGATCGCCATCTTGCTCAAAACCTGCAAGACTATCTACGAGTCCATGTCAGTTGGATGCCCAGGGAAACACCACGGTGCTGACGATTTCCTCCCAGTGTTGATGTACGTGTTGGCGCGGAGCAACATGGCGGCCATCTTGCTTGATGTGGAGTACATGATGGAGCTAATGGACCCAGCCTTACAGCTCGGGGAAGGTTCTTACTATTTAACCACAACCTACGGCGCACTGGAGCACATTAAGAACTACGACAAGATGTCAGTGACACGGCAGCTGAGCCTGGAGATACAGGACTCCATTCACCGCTGGGAACGACGCAGGACTCTGAACAAAGCCCGGGTTTCCAGGACGTCAGTACAGGATTTCATTAACGTCTCATTCCTGGAGGCGGGATCCAATACCAAGACCCTGGGAGCGAGACCCAGCACCACAACCCAGGATCTGTGCAACCAGTGCGCCGAAAAATTCGAGATCCAGGACCCGGAATGCTACAGACTGTGTGTATTAGTGGATGGGGCTTATCAACAGCTCTCCCCCGATGATTTCCCCCTGACTGTCAAAGCCAGCTTTCACCACAGCGAGCCCAAGAAAGAGTACTATTTTGTGTACAAGCCCATGAACTCGGAACAGGAAGTCGAGAAACCGCAGCCCCAGCAGACGGAGAGCTTGATTTGAGCTTTGCAAAGGAAGCATATGTAAAAACACCCACAAATAAACACCACATTTATAAGAAGCTGTGCACATAACAgcttaaatacagtaaaacaaaatatactgtcACAACACATGATGGATAATAGCCTTGATTTGAGCTCTGTTGTCTTACTTGCAAGATATTATTTctgaattttgttttgtgctgaatttactttttttaaaggagtTGGTGGGGATGTAATTGTACcattaattatattactttgacatatatacatgcatatattttctataattaGTTTGGGCCGAAGGAGTATTGTTCTGTGACATATTTTCATAATCTTTCATTTGTATATGTTCTGCATTATCACATAGAATCCATTCCTACCTCTCTTCTAAAAGGTCTGAGTTACATGATGGTTAACATTCGGATCGTGTTTAGATAATTGAAATAATGCGGTTCATTAATAAATCTCAAGCACAgccttaaagaaataaaaaaaataaaaataaaatgctgttcgGGATCCACATTGCTGATAGAATGGAAGGAGCaatttaaaatggcttttatAACCCACACAGTCCAGATAAGATTCTGTAACTATTTTATACAGTGCTGTTGACAACATATTTGTAAGATATGTAACAACCACctttacatattcatattaacaTTACTAAAAGAACAGAGGGTATGTCTTCTTacctgaaaacaagaaaaataaatcagttcaGCAGAGCATGTATTGCTTGGTGTCTTTCATTGTCTACAGATCGCAGATGATCACAAAAGGTCCTACCCTATCTTGCAGCTCCCCCTGTTGAGGCTAATATACAGTCCTGATAGTATTAGaatcaagaaacaaaaataacacaatgcattttatcGTCTGGTTtgtcaacattttcttttacccgacaaagtatttaaatgttttcacttttgtttgttttgaagcacACTTCTTTTGCAAAGTTGCAGCTCTTTGAATCCCTGTTCTTTGTTGTAAGACATGTATCCCATGTTGGTTGTGCAAGTTCCCATTTACTGGAGCTCAGTTCTCAGTGTCTCCACTTGCATGCAAGGGTTTGCAGTTGTGCCTATTAAGCAGTGAAGTGGGAGAGgtccaaataaacaaatctatattCTTTTGTAAAAGccaaatataatttgtaatactGCCGCCAGTATATCAACAAGCAGACttttgagtttttgtttcttttgtttttgcactcCACACAATTGcaatacatattacatacattaaatacaaatgagaaGACTGACGTTTTGATCTATAACAGGCCTGTTGAGAGCTCCTTTGTGAAGTAAGATTACTTGCTTTGAACTGTTATGTTTCATAAACCCGCTTTTATTACTGCAATACCTGATTTTCAAATGCTGGacaaaagtgaaaaagaaacgattgtatataaattattaaattcaaataatacTTAAGAAGGAATTTCTGCCAATGGGGGAAGTTAcgtaaaaattataataattgacaTCTTAATCTGGTctgtttatcttattttatgtaaaacacTTTGTTTCATCAATTTGTCAAATCTATATTTCCGGTAGAAGGTGTTGTGTTgttgggaaataaaaaaaaaacgtgattGACTTATATAATGCTATACATCACATAACACTtctaaataaagcaatacaagAAGGTTCTCTAATATCAGGAAATGTTTGATTTGCTACATAAGTGGACAACTATTACTTTCACCTAATGGAGTACAGTGTAGTATTATTCAACAGTTACAAGATCAAATACTATGTTAATAGTTCAATGTATTAAACTTGTGGTGTTCATATATCAAGGGGGGTATGCAAAACTTGTTATACTAATAAACGGAAAAGAGTGCACTGG

Function

GO: NA

KEGG:

id description
K23687 RIN2_3; Ras and Rab interactor 2/3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000282 True 4902 mRNA 0.44 9 9721890 9747008

Neighbor

gene id symbol gene type direction distance location
AMCG00000283 NA coding upstream 16441 9688747 ~ 9705449 (+)
AMCG00000280 NA coding upstream 161414 9557518 ~ 9560476 (+)
AMCG00000288 l2hgdh coding upstream 212966 9501693 ~ 9508924 (+)
AMCG00000287 cdkl1 coding upstream 220522 9487917 ~ 9501368 (+)
AMCG00000277 LOC106517965,LOC107602930 coding upstream 294348 9414677 ~ 9427542 (+)
AMCG00000293 NA coding downstream 81081 9828089 ~ 9840429 (+)
AMCG00000294 smoc1 coding downstream 117979 9864987 ~ 9876944 (+)
AMCG00000292 NA coding downstream 164128 9911136 ~ 9920082 (+)
AMCG00000306 arg2 coding downstream 255713 10002721 ~ 10010111 (+)
AMCG00000307 NA coding downstream 316803 10063811 ~ 10072297 (+)
G149253 NA non-coding upstream 436739 9280063 ~ 9285151 (+)
G149172 psmc6 non-coding upstream 705739 9013371 ~ 9016151 (+)
G149059 NA non-coding upstream 1048104 8668980 ~ 8673786 (+)
G149056 NA non-coding upstream 1136923 8584488 ~ 8584967 (+)
G149055 NA non-coding upstream 1137883 8583648 ~ 8584007 (+)
G149416 slc39a9,LOC107721951,LOC107664419 non-coding downstream 210705 9957713 ~ 9962571 (+)
G149415 NA non-coding downstream 226040 9973048 ~ 9975172 (+)
G149450 NA non-coding downstream 274414 10021422 ~ 10021853 (+)
G149454 NA non-coding downstream 282686 10029694 ~ 10030786 (+)
G149455 NA non-coding downstream 287566 10034574 ~ 10035072 (+)
AMCG00000281 cpsf2,LOC106608196 other upstream 130802 9561557 ~ 9591088 (+)
AMCG00000286 sos2 other upstream 175479 9514822 ~ 9546411 (+)
AMCG00000285 map4k5 other upstream 235201 9440061 ~ 9486689 (+)
AMCG00000249 acta1,actc1,LOC103383882,LOC105024319 other upstream 1136617 8579717 ~ 8585273 (+)
AMCG00000251 NA other upstream 1146766 8572936 ~ 8575124 (+)
G149424 NA other downstream 222316 9969324 ~ 9970801 (+)
G149525 LOC100846954,LOC107575789 other downstream 787582 10534590 ~ 10535137 (+)
AMCG00000352 NA other downstream 2218547 11965555 ~ 11995026 (+)
G149859 NA other downstream 2932662 12679670 ~ 12727903 (+)
AMCG00000381 NA other downstream 3219869 12966877 ~ 13030853 (+)

Expression


Co-expression Network