AMCG00000286 (sos2)


Basic Information

Item Value
gene id AMCG00000286
gene name sos2
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 9514822 ~ 9546411 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000286
ATCGAGCCCGCCGCCGAAGGACCAGTCGGGGCCGATGCGGACAGTCCGGCCCCGTCCCCGGCAACGCGAGGAGCCGCCACAGCCGCAGCCATGCAGCCGCAGCCGATATACGACTTTTCCAGCGAGGAGAACAGTCCCAAATGGAGAGGCCTCTTCGTGCAAGCACTGCGAAAGGTACAGCTCCAGGTTCATCCCAATTTGTCAGCCAAAGAGGATGCCCTTCAGCACATTGAAGAGCTGATTCTGCAGCTGTTGAACATGCTGTGTGTCGCTCAGCCACGCACCGTCCAGGATGTTGAGGAACGTGTCCAGAAGACCTTCCCCCATCCCATCGACAAGTGGGCCATCGCCGACGCTCAGTCTGCCATTGAGAAACGCAAAAGGAGAAACCCTCTGCTGCTGCCAGTTGACAAAATCCACCCTCTGCTGAAGGCAAGTCCCGCAGGCAGGGCTGAGGTCCTCGGATACAAGATCGACTACCACGTGTCTCTGTACATCGTGGCTGTGCTGGAGTACATATCCGCTGACATCCTGAAGCTGGCAGGGAATTACGTGGGCAACATCAGGCACTATGAGATCAGCCAGCAGGACATCAAAGTCTCGATGTGTGCAGACAAGGTGCTGATGGACATGTTTGACCAGGACGAGGACATTGGGCTGGTGTCTCAGTGTGGTGACGAGCCCTCGTCCACCGGCGAGCTGACCTACGATGACCTGGTGCGGCTGGAGATAGCGGAGGAGCGGCAGTACCTGCGGGAGCTCGACCTCATCATCAAGGATATCGAAGTGATCTTTAGCAACATCCTGGACATCCACGAGCTGACCGTGAAGCTGCTGGGGCTGATCGAGGACGCAGTGGAGATGACCGCGGACGGCAGTCCTCACCCTCTGGTGGGCAGCTGCTTCGAGGACCTGGCTGAGGAGCAAGCGTTTGATCCCTATGAAACCCTGTCTCAGGATATCCTCTCCCGGCAATTCCATGAGCACTTCAGCAATCTGATGGCCAGGCCCGCGGTGGCCCTGCACTTCCAGTCAATAGCAGAGGGCTTCAAGGAGGCCGTGCAGTACGTCCTGCCACAGCTCATGATGGTCCCAGTCTATCACTGTATGCACTACTTTGAACTGCTGCAGCAACTACAGGAGCGCAGTTTGGACCAGGACGACCAGGAGTGTCTGAAACAAGCCATCACTGCCCTGCTGAATCTGCAGTGCAGCGTGGAGCGCATCTACAGCAAACACCTGCCCCGCCGCAAGCCTGGGGAGCCCATGTACCGCCTATACAGCCGGCAGGTGCGCAGCAAGCAGTTGGCCATCAAGCGGATGAACGAAATCCAGAAGAGCATCGACGGCTGGGAGGGCAAGGACATCGGGCAGTGCTGCAGCGAGTTTATCCTGGAGGGCCCGCTGTGCCGCGCCGGCGCCAAGCACGAGCGCCACATCTTCCTGTTCGACGGGCTGATGATCAGCTGCAAGGCCAACCACGGGCAGAGCTCGCGGCTGCCGGGCGCGGGCAGTGGGGCCGAGTTCCGGCTCAAGGAGAAGTTCGTGCTGCGGAAGGTGCGCATCGCCGACCGTGAGGACACGACCGAGCTGCGCCACGCCTTCGACATCGTGAGCAAGGACGAGAACTGCGCCGCCTATTATGCCAAGAGCGCCGAGGACAAGAGCGCCTGGATGGCGGCACTGGTCACCCTGCAGTACCGCAGCACTCTGGACCGCATGCTGGACACAGTGCTGCTGCACGAGGAGCAGGCCCAGCCCCTGCGGCTCCCCTCGCCCGAACAGTACCGCTTCGCCGTGCAGGACTCCGAGGAGAACATTGTGTTCGAGGACAACATCCAGAGCAAGACCGGCATCCCCATCATCAAGGCCGGCACTGTGGTCAAGCTCATTGAGAGGCTCACCTACCACATGTATGCAGATCCCAATTTTGTACGTACCTTCCTGACAACATACCGTTCGTTCTGTAAGCCTCATGAGCTGCTCAACCTGCTGATAGACAGGATTGAAATCCCGGAACCCGAGCCCTCCGAGGCCGACCGGCAGGCCCTGCTGAACGGGGAGCAGCCGATGGCAGCCGAGCTCCAGAGGTTTCGCAAGGAGTACGTCCAGCCCGTGCAGCTCAGGGTGCTGAATGTGTTCCGGCAATGGGTGGAGCATCACTTCTATGACTTTGAGACGGACCCTGAACTCCGGCACAGACTGGAAGACTATATCGGCAGTAAAATTCTGCTGCGAGGAAAGTCCATGAGGAAGTGGGTGGAATCCATCAGTAAAATCATCAAGCGGAAGATGCAGACCCAGTCCAATGGAGTCATTCACAGCATCACCTTCCCCATCCCGCCCCCTCCCATCGAATGGCACATCAGCAGGGCAGGCCAGATCGAGACCTTTGACCTCATGACCCTTCACCCCATTGAGATTGCACGCCAGCTCACATTGCTGGAGTCCGAACTCTACAGGGCTGTCCGCCCCTCTGAGCTGGTGGGGAGTGTCTGGACTAAAAACGACAAGGAGAAGAACTCCCCTAATCTGTTCAGGATGATCCGACACACCACCAACCTCACGCTGTGGTTCGAGAAGTGTGTTGTGGAGGCGGAGAACGTGGAGGAGAGGGTGGCCGTGTTCAGCCGTATCATCGAGATCCTCCAGGTCTTTCAGGAACTGAACAACTTCAACGGTGTCCTGGAGATCGTCAGCGCCATCAACTCCGTGCCAGTCTACAGGCTGGACCACACCTTCGAGGCTGTGccagagaggaagaagaaaatctTAGAGGAAGCTGTAGAACTCAGTCAAGACCATTTTAAGAAGTATTTAGCAAAACTCAAGTCAATAAATCCACCTTGTGTGCCTTTCTTTGGTATATATCTCACCAATATCCTGAAGACAGAAGAAGGGAACCCCGACTTCCTGAAGCGACATGGGAAAGACCTGATCAACTTCAGCAAGCGGCGGAAAGTAGCGGAGATCACAGGGGAGATCCAGCAATACCAGAACCAGCCTTACTGCTTGAAACAGGAGCCAGATATCAAGAAATTCTTTGAAAACCTAAACCCAATGGGGAATATGAGTGACAAGGAGTTCTGCGACTACCTGTTTAACAAGTCCATGGAGATCGAACCTCGAAACTGCAAACAGCCTCCCAGATTTcccAGGAAGACCTTCTACACGCTGAAGTCTCCGGGGATCCGTCCTGTGCGCCACCCCTCTACCTCAGGCACCCTGAAGGGCCACCCCGTCCCCCTGGAGAGAGAGCCCCCCCATAAGATCACCTTCCGCAGCATCGCCGAGGCCGAGCCGGAGAGCACCTTATCAGTGCCCACCTCGCCCTGCACCCCGCCGCAGTCCGCCTGCTCGGACCAGAGCAGCGTGTTCCTGGACTCCGACCTGAACAGTTCCTGGGGTGGCAATAGTATCTTTGCTCCGGTTATCCTGCCACCATCAAAGTTCCACTCCATGTCGTGCGGCAGTCTCCACCAGCTCAGCGAGGAGCTGCTCAAGCCGCCCCCACTCCCGCCCCGCAGGAAGGACATCTCAGAAGCCAAGATGGGCCCCAGCTCGGACAGTCCTCCAGCCATCCCTCCAAGACTGCCTCCGCCGCTGCCAAGAATCCAGCCCAGAGTGCCGGTCCCCAATGGCCCGAGCGACGGCCCCCTGCCCAGCCcgccccctccacccccccggGACCCTCTTCCTGACACCCCGCCCCCTGTGCCCGTGCGCCCTCCCGAGATCTTCATGAACTACCCCCTGAACCTGCAGCCCTCCCCCGTGGGGCGCTTCCACTGGGAATTCAGCTCCTCGCCCAACTCGCCCAACTCCCTGCCGGGCTCGCCCTCCCCGCGGGTGCCACGCCGCTGCTGCCCCCTCAGCGCCAGCCAGAACAGCCTTCACCACCCTCCAGCTCCAGCCATGGCTCCTCCCGTGCCTCCGCGGCAGAACTCCAACCCCCAGCAGCCCAAACTCCCGCCAAAGACTTACAGGAGGGAACTCCCCAATCCCCTGCCCAGCCTCTCTCTAGTGGAGAGCACAGAGAGCACCCAGTGA
>TU187903
CTGCATTCCGGGGGTTTGAGCTTGAGGGCGGGCGGTCGGACGACATGGAGAAGCGGACAGCTGGCGACATAAACACCAGTGGAGAAACTCTCCGTCGCTGGAGTTGAGTGGAGCAGCCCGGTCGTCCCTGCAGCTCCGAGGCCGCGCAGATGCACACACGTCCCGGCCGGTCGAGCAGAGAGGCGGGCGTCCTTCATCCCGGAGCCGATACTGGGATACAGCAGCTTGGTGTGGGTTTTCCTCTGAGCGGCATGGCATCCTGTTAAAATGCGTTGATGTCCATGCCCGAGGAAAGACGAGGAGCAGCCAACACCGCTGTAACAAGTGGGGATCCCGTCCCTACAGAGGCAGCCCGTTGAACAGCACTGTGTCGCCGCCTCGATCGTCGACGTCTTTCGCTGTGTTTTCTGCGTGGCGGTTCACGTCGCCGCAACTTGGTGGATCTGATCTCGCcgttgaggtttttttttttttttttttttccccggtGGAGACTATGCGTCCCGGTCCTGTGGATCTGTAGTCCGTCGTATTTGTGCCGGGACAGATCGAGCCCGCCGCCGAAGGACCAGTCGGGGCCGATGCGGACAGTCCGGCCCCGTCCCCGGCAACGCGAGGAGCCGCCACAGCCGCAGCCATGCAGCCGCAGCCGATATACGACTTTTCCAGCGAGGAGAACAGTCCCAAATGGAGAGGCCTCTTCGTGCAAGCACTGCGAAAGGTAATGGAGAAACATGATGTCAACGTGTCTGTGGCGGCCGGGTTTTTTGGGGAAAGTG

Function

symbol description
sos2 Predicted to enable DNA binding activity; guanyl-nucleotide exchange factor activity; and protein heterodimerization activity. Acts upstream of or within pronephros development. Human ortholog(s) of this gene implicated in Noonan syndrome 9. Orthologous to human SOS2 (SOS Ras/Rho guanine nucleotide exchange factor 2).

NR:

description
PREDICTED: son of sevenless homolog 2

GO:

id name namespace
GO:0005622 intracellular anatomical structure cellular_component
GO:0003677 DNA binding molecular_function
GO:0046982 protein heterodimerization activity molecular_function

KEGG:

id description
K03099 SOS; son of sevenless

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000286 True 4050 mRNA 0.59 23 9515369 9546411
TU187903 False 779 lncRNA 0.60 1 9514822 9515600

Neighbor

gene id symbol gene type direction distance location
AMCG00000288 l2hgdh coding upstream 5898 9501693 ~ 9508924 (+)
AMCG00000287 cdkl1 coding upstream 13454 9487917 ~ 9501368 (+)
AMCG00000277 LOC106517965,LOC107602930 coding upstream 87280 9414677 ~ 9427542 (+)
AMCG00000278 NA coding upstream 102490 9378563 ~ 9412332 (+)
AMCG00000274 pygl,LOC104938237 coding upstream 151388 9355981 ~ 9363434 (+)
AMCG00000280 NA coding downstream 11107 9557518 ~ 9560476 (+)
AMCG00000283 NA coding downstream 142336 9688747 ~ 9705449 (+)
AMCG00000282 NA coding downstream 175479 9721890 ~ 9747008 (+)
AMCG00000293 NA coding downstream 281678 9828089 ~ 9840429 (+)
AMCG00000294 smoc1 coding downstream 318576 9864987 ~ 9876944 (+)
G149253 NA non-coding upstream 229671 9280063 ~ 9285151 (+)
G149172 psmc6 non-coding upstream 498671 9013371 ~ 9016151 (+)
G149059 NA non-coding upstream 841036 8668980 ~ 8673786 (+)
G149056 NA non-coding upstream 929855 8584488 ~ 8584967 (+)
G149055 NA non-coding upstream 930815 8583648 ~ 8584007 (+)
G149359 LOC103376870 non-coding downstream 173536 9719947 ~ 9776988 (+)
G149416 slc39a9,LOC107721951,LOC107664419 non-coding downstream 411302 9957713 ~ 9962571 (+)
G149415 NA non-coding downstream 426637 9973048 ~ 9975172 (+)
G149450 NA non-coding downstream 475011 10021422 ~ 10021853 (+)
G149454 NA non-coding downstream 483283 10029694 ~ 10030786 (+)
AMCG00000285 map4k5 other upstream 28133 9440061 ~ 9486689 (+)
AMCG00000249 acta1,actc1,LOC103383882,LOC105024319 other upstream 929549 8579717 ~ 8585273 (+)
AMCG00000251 NA other upstream 939698 8572936 ~ 8575124 (+)
AMCG00000217 gpx2 other upstream 2152115 7359278 ~ 7362707 (+)
AMCG00000215 max,LOC107668248,LOC103457350 other upstream 2190371 7313872 ~ 7324451 (+)
AMCG00000281 cpsf2,LOC106608196 other downstream 15146 9561557 ~ 9591088 (+)
G149424 NA other downstream 422913 9969324 ~ 9970801 (+)
G149525 LOC100846954,LOC107575789 other downstream 988179 10534590 ~ 10535137 (+)
AMCG00000352 NA other downstream 2419144 11965555 ~ 11995026 (+)
G149859 NA other downstream 3133259 12679670 ~ 12727903 (+)

Expression


Co-expression Network