AMCG00000351 (ivd,LOC107719458)


Basic Information

Item Value
gene id AMCG00000351
gene name ivd,LOC107719458
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 12034131 ~ 12041923 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000351
ttaatttccCTTCCCAACATGGCGTCTCTGCTGTTCCACGCACATTACTGCGCAGCTGCAAACACCACTTCAGTTCCGACCTGGTTCAAGCCTGCTACTGAAGTCAAGCTGGTGCTGctattttgctttttctttctgacTTCAGGACATAATACCACCGACAATGTTGGCGGCACGGAGAGCACTGTTGACCGGCTTGAGATATGCCGCTGTCCCCAGACGTGCCTGCGCCGGCTCTGCAGTGCCGATAGACGATATTGTTAACGGACTGACAGACGAGCAGATTCAACTCAGACAGAGCGTACAGAGGTTCTGTCAGGACCAGCTGGCTCCCAAAGCTCAAGAGATCGACCAGAACAACgattttaaagaaatgaagGAATTTTGGAAACATCTTGGTGATCTTGGAGTGCTGGGGATAACGGCTCCTGTGGAGTTTGGTGGCTCAGGATTGGGTTTCCTGGATCATGTAATAGTGATGGAGGAAATTTCACGTGTGTCTGCCGCAGTGGGGCTGAGCTATGGCGCGCACTCCAATCTCTGTGTCAACCAGCTCGTCCGCCATGGTAATCAGGCCCAGAAAGAGAAGTACCTGCCAAAGCTCCTAAACGGTGAGCATGTGGGTGCCTTGGCCATGAGTGAGCCTGGCGCTGGCTCTGACGTCGTGTCCATGAAACTCAAGGGAGAGAAGAAAGGAGATCACTACGTGCTGAATGGCAATAAATTCTGGATAACAAATGGGCCAGAGGCAGATGTGCTCATAGTGTACGCCAAGACGGATCCCAAGTCTAACCCCACCTCTCGTGGGATTACAGCCTTCATCGTGGAGAAGGGAATGCCAGGGTTCAGCACGGCACAGAAACTGGACAAGCTGGGCATGAGGGGCTCCAGCACCTGTGAGCTAATCTTTGAAGACTGCAAAGTGCCTGAACAAAATCTGCTGGGGCACCTGAACAAAGGTGTGTATGTGTTGATGAGTGGACTGGACCTGGAGAGACTAGTGCTGTCTGCCGGACCTATAGGGATCATGCAAGCAGTGATGGATCACTCCGTCCCCTACATGCACATCAGAGAGGCTTTTGGACAGAAGATCGGGCACTTCCAGCTCCTGCAGGGGAAGATGGCTGACATGTACACCCGGCTGAGCTCCTGCCGTCAGTACGTGTACAATGTGGCGCGGGCCTGTGACAGGGGCCACTTCAACTCCAAGGACTGCGCGGGAGTCATTCTTTACGCAGCAGAAATGGCTACTCAAGTGGCGTTGGATGGCATTCAGTGTCTGGGAGGAAATGGTTACATCAACGACTATCCAATGGGACGCTTCCTGCGAGACGCCAAGCTGTACGAGATCGGTGCCGGCACCAGCGAGGTCCGGAGACTCGTCATTGGCAGGGCTTTCAATGCCATGTATAAGTAACCTGGAAACTCTAACATCCTTAACATGGACTGAGCAGGTATACTGCCCAGCCGCATCAAGAGGCCTTAGAGATGAACTGAAAACAGGACGGTTCCTAGATCATACCTCGGACAAACGTCTTGACCATGTCCTTACAAACAACCACTGCACTACAGGCACTGTGGTGCTGCTCAAACTCATCAGCCTGGCTTCCGCTGCAGTTTATGCCAGTCTTTTAGATTACAGTTGTGTAGCTGATGAAATAAGACCTCTTCAGACTTTCGAGATTCCGTCTCCCCCGGATGTAATCAAGTTAGCATCTGGGACCAGTCCAGCCCGTGTGAAGTGGATATGAAGAGCGGAGGGATGCATGAAGAGATTTGTATCACTGTGAAACCGGAAGGGGCTACTTGTATATAAGGATGCTGTACTAGACCAATCCTTATTCAGTACAAAACATTAGGCTATATATGGCTTATGGACAGTGGAACGATCTGgaattttattgcttttattgcttttctatTCTCTTCCAACAATGTTGTCCAACCCTATAAACCATACACTGGTGCTTTGTCTGTTGAGAACTGCAAATTCCAGAGTATGTTGTTCAGTTTaacaattgtttaaataatttaaaaaaaaaaaattgaatacattttgttaaacactgcatttaagttttaaaatattttattgccaTCAATGCAGATTATCAAAGATCAGTAGATCTTTTCAGTAGAAAGTTTAGAAATGATCActcaatataatgttttattattggaTAGCTTGGGGATTCCATAAATCTGTTGAGAAAAAGGCTGCTAGTCTTTCTTTCTGATTTCATAGCTGGTGTGTAAAATACTGATTAGCAGATTTTGATTCTTTGACTAAATTTGAAAGATTTAAgtaaatttgtttttctgtagacCATCACTTAcaatatcttattttttaatattatgaaaATGACTTGTATGTTTGCGGTTTGTGgaaaaattagattaaaaaaaactgacaacTGTTCCTTGTCGGTTCTGATTACTCCGTTGCTAGTAAAGTATGTGGAATCCGTTCAGCTTGGATGAAGTTAGGAATTGCATGATTCCACATGGTTTTTGTGTTCTTCAAAATCTAGAAATGTTTAGAGGCAACACTACAGCTGTTAAACATGGAAATTCAGAACAAGATCTTTACAAATGGTTTAGGTGCAGAGACTCAAACTAAAGCATTGTGATTGAAGCTGCTTTACTGGTGCCCTCAATAATGAAGACTGCTTGCTCTTGTATGCAATTCTTAAATTTATGGATTCCAgtgctataaaaaataaaatacggaccag

Function

symbol description
ivd Predicted to enable isovaleryl-CoA dehydrogenase activity. Predicted to be involved in leucine catabolic process. Is expressed in alar plate midbrain region; digestive system; immature eye; musculature system; and optic tectum. Human ortholog(s) of this gene implicated in amino acid metabolic disorder and isovaleric acidemia. Orthologous to human IVD (isovaleryl-CoA dehydrogenase).

NR:

description
novel protein similar to human isovaleryl Coenzyme A dehydrogenase (IVD)

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0050660 flavin adenine dinucleotide binding molecular_function
GO:0003995 acyl-CoA dehydrogenase activity molecular_function

KEGG:

id description
K00253 IVD, ivd; isovaleryl-CoA dehydrogenase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000351 True 2738 mRNA 0.45 11 12034131 12041923

Neighbor

gene id symbol gene type direction distance location
AMCG00000353 NA coding upstream 147234 11866155 ~ 11886897 (+)
AMCG00000332 NA coding upstream 194451 11836793 ~ 11839680 (+)
AMCG00000324 jmjd7 coding upstream 299632 11732396 ~ 11734499 (+)
AMCG00000323 NA coding upstream 319513 11704595 ~ 11714618 (+)
AMCG00000326 NA coding upstream 345652 11685554 ~ 11688479 (+)
AMCG00000339 NA coding downstream 34133 12076056 ~ 12090893 (+)
AMCG00000340 rpusd2 coding downstream 120068 12161991 ~ 12169461 (+)
AMCG00000346 NA coding downstream 160247 12202170 ~ 12208132 (+)
AMCG00000347 NA coding downstream 212505 12254428 ~ 12285830 (+)
AMCG00000344 LOC106521412,LOC103377579,LOC108270303,LOC102202359,LOC100696514 coding downstream 302944 12344867 ~ 12345699 (+)
G149739 NA non-coding upstream 6688 12027227 ~ 12027443 (+)
G149674 NA non-coding upstream 233391 11800000 ~ 11800740 (+)
G149673 NA non-coding upstream 234253 11799561 ~ 11799878 (+)
G149672 NA non-coding upstream 236124 11797375 ~ 11798007 (+)
G149668 NA non-coding upstream 239275 11793367 ~ 11794856 (+)
G149747 NA non-coding downstream 50464 12092387 ~ 12098372 (+)
G149869 LOC105909576,LOC107704376 non-coding downstream 791616 12833539 ~ 12841673 (+)
G150042 NA non-coding downstream 1370942 13412865 ~ 13413064 (+)
G150066 LOC100846954,LOC107575789 non-coding downstream 1607480 13649403 ~ 13650051 (+)
G150106 NA non-coding downstream 1697853 13739776 ~ 13746116 (+)
AMCG00000352 NA other upstream 39105 11965555 ~ 11995026 (+)
G149525 LOC100846954,LOC107575789 other upstream 1498994 10534590 ~ 10535137 (+)
G149424 NA other upstream 2063330 9969324 ~ 9970801 (+)
AMCG00000281 cpsf2,LOC106608196 other upstream 2443043 9561557 ~ 9591088 (+)
AMCG00000286 sos2 other upstream 2487720 9514822 ~ 9546411 (+)
G149859 NA other downstream 637747 12679670 ~ 12727903 (+)
AMCG00000381 NA other downstream 924954 12966877 ~ 13030853 (+)
G150069 NA other downstream 1648916 13690839 ~ 13692589 (+)
AMCG00000412 pgf,LOC102799665,LOC102204058,LOC106593515,LOC106611025 other downstream 2091215 14133138 ~ 14153840 (+)
AMCG00000443 esrrb,LOC106611051,LOC101473368,LOC100708924 other downstream 2889855 14931778 ~ 14944400 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000189_03335757_03343285 IVD coding CI01000189 null 3335373 ~ 3343285 (-)