AMCG00000357 (yy1a,LOC108411685,LOC108258103,LOC101066055,LOC108425622)


Basic Information

Item Value
gene id AMCG00000357
gene name yy1a,LOC108411685,LOC108258103,LOC101066055,LOC108425622
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 12385408 ~ 12399523 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000357
ctctttatAACTGCATCGCGCAATGGCcttaaaatacagtaacaaaacCAGGTAAACAAAGTGAAGAAGAGTTGTGGGAAGTCGCTCAGCCCGACTCGCCCAGCCGCAGCTGCCGCGGCCATGGAGCGCCGCAAATCTCGCGAGGCTGCGTCTGCGAGCGGAGCGGCGACGCGAGTTGGTGTGGGCCGAGTTGAGTTATTTGTGTTGTCGAAGAAGGAGGAAGGGAAAGGAGACcggagaggggggggggtttaCATCGGCAACTGAACACAGCGAGTGTGAGAGCAATCCGGGGGAATCCAATATGGCATCGGGCGATACGCTCTACATCGAGACCGACGGCTCGGAGATGCCCGCCGAGATCGTTGAACTCCACGAGATCGAGGTGGAGACCATCCCGGTGGAGACGATCGAGACCACGGTGGTCGGGGGGGACGACGACGACGAGCACCACCAGCCCATGATCGCCCTGCAGCCGCTGGTCACAGATGATCCGAACCAGGTTCACCACCACCAAGAGGTGATCTTAGTGCAGACCCGGGAGGAGGTGGTCGGCGGGGACGACTCGGACCTCCGGGCGGACGATGGCTTTGAGGACCAGATCCTCATACCCGTCCCTGCCCCGGCCGCCGAGGAGGAATACATCGAGCAGACTCTGGTGACTGTAGCCGGGAAGAGCAGCTCTTCGGCGGGGCGGATGAAGAAAGGGGGAGGCGGCAGCGGGAAGAAAGCGGGTAAAAAGAGCTACCTGAGCGGGGCCGAGGCCAGCGGCAGAAAATGGGAACAGAAGCAGGTCCAAATAAAGACTCTGGAGGGGGAGTTTTCGGTTACGATGTGGGCTTCTGATGACAAAAAGGACATTGACCATGAGACTGTGGTGGAGGAACAGATCATTGGAGAGAACTCCCCTCCAGATTATTCGGAGTACATGACCGGGAAGAAGCTTCCTCCTGGAGGAATCCCAGGGATCGACCTCTCTGACCCCAAACAGCTAGCGGAGTTCGCCAGGATGaagccaagaaaaataaaggaagatGATGCCCCCAGGACGATAGCCTGTCCCCATAAAGGATGCACAAAGATGTTCAGGGACAACTCCGCCATGCGGAAGCACTTGCACACTCACGGGCCTCGGGTGCACGTCTGCGCGGAGTGTGGGAAGGCCTTCGTGGAAAGCTCCAAGCTGAAGCGGCATCAACTCGTTCACACTGGAGAGAAACCTTTTCAGTGTACGTTCGAGGGCTGTGGCAAGCGGTTCTCCCTGGACTTTAACTTGCGCACTCATGTGCGGATTCACACCGGAGACCGCCCCTACGTCTGCCCTTTCGACGGCTGCAATAAGAAGTTCGCTCAGTCCACTAACCTGAAGTCTCACATCTTAACGCACGCTAAAGCCAAAAACAACCAGTGAACCCACGGAGGCACCTCCCACCCAGGCCTCAACATGGCGGCATCCTAAcgcaaaatgttaaaaaaatgaacccccctttgtatattgtttctagaaaaagttttaaaagaaaattacttAACAGACTTTTTGATAAGTGAGgaaataaggaaaaacaaaactttaaagcTGAAGCTAATCTGTTTCTCACCTCTAGTCCTGACGAGAGAACAGCGATGTTCTGTAAAGCCAATCCATAAAAAACGGTCCATTCAGGAGGACGCACTCGTGAACTTGCATCTAAAGACAATTCTTTATACAACTGCgctaaaacaaaaccattagACTGATTTTCAcatcaaacaaatataattttcactCGTCTGCATAGAAAAAAAcgaattgctttttaattttgtatttttccaagtGTGCATATTGTACACTTATTTTGGGATATGCTTAGTAATGCTGTGTGTGATTTTTTCTGAAGATTGAAATCTGCTTGTAATAGATCTTCTTGGAAGAGAATTGGCAGTTACTGTACTACATGCATACTtcaaaagtgttatttttttttttctgtataaagttagttttttttttttttttttttgggctcCCTAATTTGGTTGTATTCTTTACTGTTAACtcattttgtataattgtatcgTACAGCTGTATTGAAATCATGTAGACTCTAATAGCAATGTGATTTAAATAGTGTTAatcaattaaaaccattttagtcacaacatttagtttttgttcctGACATGTACTGCCAGTTGCTAAATAAGTCTAATGTATTTCACTTCAAGCCTGTCTCGGAtacattacacaaacacaaaaaacaaaaacaaaaaaaaaacgtggtGCTCAGTTGCATTTGTAGAATGTATTGTACAGACATCAACCTTTATGAACTCCTGTTTATCTGTACATCCAATGTACGCAAGAGGCCAACAATAAAATGGTGGTCCCAAAGCAAGCACTTAGTAGAAATTTAATTTATAGAATgttcatttataatttttgtCAGGCAGGAAAATTTAGATGGTTGTAATGGTTGAACACTGTCTGCTGGTTGTGTTTCTTGTAAACGCCTGTTGACCTGGTATTTCCCACCctgatttattaatgtgtttaaaaagggACTGCCTTGTTGTGGCTGGAAAAAAAGTAACTGAAACCCAAATTACATATTGATAATGGCATATTAAAGTTAGTTGAAAATGTTCACCTTGTCACAGTACAAGCATATCTGTTTTGAGTGTATGGAGGGGTGGAGGCGCAGGAGTTTTAATGAATGTTGTCCGGTCTGGTTTTGTCAAGTATGGACGCTGTTCAATTTACTTGTTTGTGGTGTGGTGGATTGTATAAAGATTGCAAGGTTTACATAATTTCTTGTTTCAGGAGGTTTGTACCATACTGGGGGGGTTATTGTTTGGATGACCTGCACTGGTGTTTGGGTCAGTGCATAGAGAATCTGCAGGGGTTTACTTACCCTGTACATCTAAAGGACACCCTGCCAGAGATGCTTCCATTAAAGACTACGTTCTGTGACCCTGGACTCGGCAGTTGGGGACCATCCACCGATTTACCCTCTTTCCCCCCCATCTCCTCTCTGTAGACCCTCTTGATCTGTGCTGATGAGCTCCACTCATGAAGCTTTACTGATACAGGAGCCCTCTGAAGGACTCTGCAAAACCAACTCCAGTGCTGCAGCCTGAGACTAAACTGAAATTCAAAAGACGGAGGCTTTGCTGGCAATGGAGGGCTCCCTGACTAGAAGTTGACATGGATCTGGACTAAGATCAATATCTATCAACAGGCTCCTACATGAGACAAGAACacatttttactttgaaatgtagAGGAAGTGCCAGAGTAACCCAAGGGATcttctaccaaaacaaaacttttgaTGGCATTCCCTTTAATAGTGCTACAAAACACAGTCACCCTGTTTTTAGATCCTTCTCGTCAGAAACATCAGTCTAGGTTGTCCAACCTGCTACAGCCATTCATGTTCTGAAGCTGCCCTTTCAATATTTGTCGCACCAGCTTATTTTAACCATATCAAGATGGTACCATCTGTTGCTCGACCTTTCCCTCCAGACAGGCTTGGTTCCCCTTGTCTTTAAATGTGCATCTGGAACTTCTCTCCTGGCAGAAAACCCAGTTGCAGATATGTAAATTGTACCCCACTACTCTTTCCCGATCCGTTTCTAATCTTCCTTTGCGAGATATGGTTATCGAACAGGAAGTTACAAGTTGGGGCAAATAACGTGCTACTGAAGACTTCCTCTTTGAATTGCACAAGTCTGGCATTTAATCAATCTGCCAATAATGATACCGCAGCCCCCCTTCCTCTCCAGTCCTTGTTCTCCTGTATCTTTCAACACATGATGATAGTTCTCATGAGGTTAGATGAAACGGCACATGAAAAGCTGGAGTGAATGCAGTCCTGTTACGTTCGGACCCTGACAGAGTTATCCTGGTCCTAAACCATTAATGCCCAGATAATCAAGATTATTCCCACTTGTCCCTCTATTGTCTATGATTCCTGCATTCTTAAACCATACAAAAACCAAGGATGTCAAGGCCTGTGAGCAGTGGCCTCCAATGGAAATGTCTCCTCCATTTTTCAGTTTGGATACTTACCCTGTGCTGCAGTCAGGTACCTAAGAGTCCAATCAGACAAGAACCTTAACTTCAGCATCCACATTTTAACTATTGTGAAACCATCATTCTGTCATCTCCAAACCTTAGAAAAAgtccattcctctctctcttgtaGATGCTGTGATTGTGTCATGCCTTTATCGTCTGAATTAATGCAAAGCTCTATCTACTGGATCCCCCGATCATCATTTACTTCTTTTGTAagcctttgttttttattttgttgttgttttgatttgatttttttttgtcatgtttgatttataataagACCTTGCttagttttta

Function

symbol description
yy1a Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within brain development; circulatory system development; and positive regulation of gene expression. Predicted to be part of PcG protein complex and transcription regulator complex. Is expressed in several structures, including eye; heart; myotome; notochord posterior region; and pronephros. Human ortholog(s) of this gene implicated in congestive heart failure. Orthologous to human YY1 (YY1 transcription factor).

NR:

description
PREDICTED: transcriptional repressor protein YY1-like isoform X2

GO:

id name namespace
GO:0005515 protein binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K09201 YY; transcription factor YY

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000357 True 4366 mRNA 0.45 5 12385408 12399523

Neighbor

gene id symbol gene type direction distance location
AMCG00000345 NA coding upstream 21385 12356841 ~ 12364023 (+)
AMCG00000344 LOC106521412,LOC103377579,LOC108270303,LOC102202359,LOC100696514 coding upstream 39709 12344867 ~ 12345699 (+)
AMCG00000347 NA coding upstream 99578 12254428 ~ 12285830 (+)
AMCG00000346 NA coding upstream 177276 12202170 ~ 12208132 (+)
AMCG00000340 rpusd2 coding upstream 215947 12161991 ~ 12169461 (+)
AMCG00000358 NA coding downstream 19256 12418779 ~ 12422714 (+)
AMCG00000359 NA coding downstream 30535 12430058 ~ 12459938 (+)
AMCG00000365 NA coding downstream 173448 12572971 ~ 12579239 (+)
AMCG00000366 NA coding downstream 309256 12708779 ~ 12709438 (+)
AMCG00000380 NA coding downstream 338132 12737655 ~ 12750364 (+)
G149747 NA non-coding upstream 287036 12092387 ~ 12098372 (+)
G149739 NA non-coding upstream 357965 12027227 ~ 12027443 (+)
G149674 NA non-coding upstream 584668 11800000 ~ 11800740 (+)
G149673 NA non-coding upstream 585530 11799561 ~ 11799878 (+)
G149672 NA non-coding upstream 587401 11797375 ~ 11798007 (+)
G149869 LOC105909576,LOC107704376 non-coding downstream 434016 12833539 ~ 12841673 (+)
G150042 NA non-coding downstream 1013342 13412865 ~ 13413064 (+)
G150066 LOC100846954,LOC107575789 non-coding downstream 1249880 13649403 ~ 13650051 (+)
G150106 NA non-coding downstream 1340253 13739776 ~ 13746116 (+)
G150303 NA non-coding downstream 2065369 14464892 ~ 14465302 (+)
AMCG00000352 NA other upstream 390382 11965555 ~ 11995026 (+)
G149525 LOC100846954,LOC107575789 other upstream 1850271 10534590 ~ 10535137 (+)
G149424 NA other upstream 2414607 9969324 ~ 9970801 (+)
AMCG00000281 cpsf2,LOC106608196 other upstream 2794320 9561557 ~ 9591088 (+)
AMCG00000286 sos2 other upstream 2838997 9514822 ~ 9546411 (+)
G149859 NA other downstream 280147 12679670 ~ 12727903 (+)
AMCG00000381 NA other downstream 567354 12966877 ~ 13030853 (+)
G150069 NA other downstream 1291316 13690839 ~ 13692589 (+)
AMCG00000412 pgf,LOC102799665,LOC102204058,LOC106593515,LOC106611025 other downstream 1733615 14133138 ~ 14153840 (+)
AMCG00000443 esrrb,LOC106611051,LOC101473368,LOC100708924 other downstream 2532255 14931778 ~ 14944400 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_012198 yy1a coding NC_007128.7 CM002901.2 30857008 ~ 30863252 (-)
grasscarp (Ctenopharyngodon idella) CI01000029_09212269_09216732 YY1A, YY1.L, YY1, YY1.S coding CI01000029 null 9210827 ~ 9216732 (-)