Gene
RNA
| Item | Value |
|---|---|
| gene id | AMCG00000377 |
| gene name | NA |
| gene type | coding |
| species | bowfin (Amia calva) |
| category of species | ecological fish |
| Item | Value |
|---|---|
| chromosome id | CM030141.1 |
| NCBI id | CM030141.1 |
| chromosome length | 22147039 |
| location | 12764272 ~ 12784236 (+) |
| genome version | AmiCal1_2021_bowfin_Genome |
| id | name | namespace |
|---|---|---|
| GO:0050790 | regulation of catalytic activity | biological_process |
| GO:0007165 | signal transduction | biological_process |
| GO:0000159 | protein phosphatase type 2A complex | cellular_component |
| id | description |
|---|---|
| K11584 | PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B' |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| AMCG00000377 | True | 1314 | mRNA | 0.44 | 12 | 12764272 | 12784236 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| AMCG00000380 | NA | coding | upstream | 13908 | 12737655 ~ 12750364 (+) |
| AMCG00000366 | NA | coding | upstream | 54834 | 12708779 ~ 12709438 (+) |
| AMCG00000365 | NA | coding | upstream | 185033 | 12572971 ~ 12579239 (+) |
| AMCG00000359 | NA | coding | upstream | 304334 | 12430058 ~ 12459938 (+) |
| AMCG00000358 | NA | coding | upstream | 341558 | 12418779 ~ 12422714 (+) |
| AMCG00000376 | dync1h1 | coding | downstream | 6144 | 12790380 ~ 12824958 (+) |
| AMCG00000368 | wdr20,LOC106610634,LOC101173269 | coding | downstream | 94202 | 12878438 ~ 12884325 (+) |
| AMCG00000369 | nemf,LOC102775640 | coding | downstream | 113906 | 12898142 ~ 12920131 (+) |
| AMCG00000370 | NA | coding | downstream | 148375 | 12932611 ~ 12942366 (+) |
| AMCG00000367 | NA | coding | downstream | 158820 | 12943056 ~ 12948495 (+) |
| G149747 | NA | non-coding | upstream | 665900 | 12092387 ~ 12098372 (+) |
| G149739 | NA | non-coding | upstream | 736829 | 12027227 ~ 12027443 (+) |
| G149674 | NA | non-coding | upstream | 963532 | 11800000 ~ 11800740 (+) |
| G149673 | NA | non-coding | upstream | 964394 | 11799561 ~ 11799878 (+) |
| G149672 | NA | non-coding | upstream | 966265 | 11797375 ~ 11798007 (+) |
| G149869 | LOC105909576,LOC107704376 | non-coding | downstream | 49303 | 12833539 ~ 12841673 (+) |
| G150042 | NA | non-coding | downstream | 628629 | 13412865 ~ 13413064 (+) |
| G150066 | LOC100846954,LOC107575789 | non-coding | downstream | 865167 | 13649403 ~ 13650051 (+) |
| G150106 | NA | non-coding | downstream | 955540 | 13739776 ~ 13746116 (+) |
| G150303 | NA | non-coding | downstream | 1680656 | 14464892 ~ 14465302 (+) |
| G149859 | NA | other | upstream | 36369 | 12679670 ~ 12727903 (+) |
| AMCG00000352 | NA | other | upstream | 769246 | 11965555 ~ 11995026 (+) |
| G149525 | LOC100846954,LOC107575789 | other | upstream | 2229135 | 10534590 ~ 10535137 (+) |
| G149424 | NA | other | upstream | 2793471 | 9969324 ~ 9970801 (+) |
| AMCG00000281 | cpsf2,LOC106608196 | other | upstream | 3173184 | 9561557 ~ 9591088 (+) |
| AMCG00000381 | NA | other | downstream | 182641 | 12966877 ~ 13030853 (+) |
| G150069 | NA | other | downstream | 906603 | 13690839 ~ 13692589 (+) |
| AMCG00000412 | pgf,LOC102799665,LOC102204058,LOC106593515,LOC106611025 | other | downstream | 1348902 | 14133138 ~ 14153840 (+) |
| AMCG00000443 | esrrb,LOC106611051,LOC101473368,LOC100708924 | other | downstream | 2147542 | 14931778 ~ 14944400 (+) |
| AMCG00000514 | NA | other | downstream | 4027217 | 16811453 ~ 16814365 (+) |
| species | gene id | symbol | gene type | chromosome | NCBI id | location |
|---|---|---|---|---|---|---|
| grasscarp (Ctenopharyngodon idella) | CI01000060_00104547_00107520 | PPP2R5CB, PPP2R5C, PPP2R5C.L | coding | CI01000060 | null | 104547 ~ 107554 (+) |
