AMCG00000381


Basic Information

Item Value
gene id AMCG00000381
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 12966877 ~ 13030853 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000381
agatgTTGTACAGTGGGACAAAAACAGGCATTTCTAAAAGACTACAAAACGCAGCCTCTTGGGACATCGCGGCAGGAAGTGCGCCGGGGACGGGGTTTGATCTGCACATGCGCGCCTCAGCTCCTTCCTTTTCGATATCCGAGCGATAGAGACAAGATGGGTCACCAGCAGCTCTACTGGAGTCACCCTCGAAAATTCGGCCAGGGATCCCGATCCTGCCGAGTATGCTCTAACCGACACGGTCTGATCCGTAAATATGGGCTGAACATGTGCCGCCAGTGCTTCCGACAGTATGCTAAAGACATCGGCTTTTGCAAGGACCTCATTTTTCTGCCTCATCAGAAGGATGAGAGCACAGGGACACGCTGCAAACACAGAACAGAGCGGGCACAGCGCATGGCTGCCTGGCAACAGGGAAACAGTCAGTGGGCAGAGGATGTTCCTGCCCCAAACTGCGACTCTAAACGCTTCGAACAAATACCTGCCAACAGGTCTTATGAGCACTGA
>TU188779
GATCTGCACATGCGCGCCTCAGCTCCTTCCTTTTCGATATCCGAGCGATAGAGACAAGATGGGTCACCAGCAGCTCTACTGGAGTCACCCTCGAAAATTCGGCCAGGGATCCCGATCCTGCCGAGTATGCTCTAACCGACACGGTCTGATCCGTAAATATGGGCTGAACATGTGCCGCCAGTGCTTCCGACAGTATGCTAAAGACATCGGCTTTTGCAAGCTTGACTAACTATGCGGAGATGCAATGGGAATCAACACTGAAGGTGGACAAGATGACCGCAAGACAGATTGACTTTCTATTGGTTACATtGTGATCCTGCctcatgttttttaaaatggtatCCTGCCAGTATATTTCATTGTCTGGCATCCTATGGCCCAAGACTTGCAGATGCACAATTTTAGCTTTGCATCAAATTGCAGA

Function

GO:

id name namespace
GO:0072332 intrinsic apoptotic signaling pathway by p53 class mediator biological_process
GO:0051726 regulation of cell cycle biological_process
GO:0048821 erythrocyte development biological_process
GO:0006412 translation biological_process
GO:0001525 angiogenesis biological_process
GO:0060218 hematopoietic stem cell differentiation biological_process
GO:0001570 vasculogenesis biological_process
GO:0009790 embryo development biological_process
GO:0022627 cytosolic small ribosomal subunit cellular_component
GO:0008270 zinc ion binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02980 RP-S29e, RPS29; small subunit ribosomal protein S29e

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000381 True 507 mRNA 0.53 5 12966877 13030853
TU188779 False 424 lncRNA 0.48 4 12966975 12968142

Neighbor

gene id symbol gene type direction distance location
AMCG00000367 NA coding upstream 18382 12943056 ~ 12948495 (+)
AMCG00000370 NA coding upstream 24511 12932611 ~ 12942366 (+)
AMCG00000369 nemf,LOC102775640 coding upstream 46746 12898142 ~ 12920131 (+)
AMCG00000368 wdr20,LOC106610634,LOC101173269 coding upstream 82552 12878438 ~ 12884325 (+)
AMCG00000376 dync1h1 coding upstream 141919 12790380 ~ 12824958 (+)
AMCG00000384 mamdc1,mdga2 coding downstream 296539 13327392 ~ 13338022 (+)
AMCG00000385 NA coding downstream 321479 13352332 ~ 13409859 (+)
AMCG00000386 NA coding downstream 577900 13608753 ~ 13617625 (+)
AMCG00000387 NA coding downstream 587635 13618488 ~ 13626756 (+)
AMCG00000388 NA coding downstream 637036 13667889 ~ 13679929 (+)
G149869 LOC105909576,LOC107704376 non-coding upstream 125204 12833539 ~ 12841673 (+)
G149747 NA non-coding upstream 868505 12092387 ~ 12098372 (+)
G149739 NA non-coding upstream 939434 12027227 ~ 12027443 (+)
G149674 NA non-coding upstream 1166137 11800000 ~ 11800740 (+)
G149673 NA non-coding upstream 1166999 11799561 ~ 11799878 (+)
G150042 NA non-coding downstream 382012 13412865 ~ 13413064 (+)
G150066 LOC100846954,LOC107575789 non-coding downstream 618550 13649403 ~ 13650051 (+)
G150106 NA non-coding downstream 708923 13739776 ~ 13746116 (+)
G150303 NA non-coding downstream 1434039 14464892 ~ 14465302 (+)
G150364 NA non-coding downstream 1702379 14733232 ~ 14733440 (+)
G149859 NA other upstream 238974 12679670 ~ 12727903 (+)
AMCG00000352 NA other upstream 971851 11965555 ~ 11995026 (+)
G149525 LOC100846954,LOC107575789 other upstream 2431740 10534590 ~ 10535137 (+)
G149424 NA other upstream 2996076 9969324 ~ 9970801 (+)
AMCG00000281 cpsf2,LOC106608196 other upstream 3375789 9561557 ~ 9591088 (+)
G150069 NA other downstream 659986 13690839 ~ 13692589 (+)
AMCG00000412 pgf,LOC102799665,LOC102204058,LOC106593515,LOC106611025 other downstream 1102285 14133138 ~ 14153840 (+)
AMCG00000443 esrrb,LOC106611051,LOC101473368,LOC100708924 other downstream 1900925 14931778 ~ 14944400 (+)
AMCG00000514 NA other downstream 3780600 16811453 ~ 16814365 (+)
G150750 NA other downstream 3905140 16935993 ~ 16938282 (+)

Expression


Co-expression Network