AMCG00000508


Basic Information

Item Value
gene id AMCG00000508
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 17191781 ~ 17194116 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000508
GTTGTTTATAAAAACAACGATATCAGGTTGGAGCTGTCACGTCTGGCCAGGATTGTCGATCCCAAAATGAAGATCCAAGGCGATGTGGTGTTCAAGTGTGAGAATGTTGCCACACTGGACCCCATATCATTCGAGACCCCTGAAGCTTACATCAGCCTGCCTAAGTGGAACACCAAGAGGATGGGCTCGATATCCTTCGACTTCCGCACGTCCGAGCCGAACGGGCTTATCTTATTCACACACGGGAAACCCCAGGAACGGAAGGATTCTAGGagtcagaaaaacacaaaggtcGATTTCTTTGCTGTGGAACTTCTAGATGGCAGTCTGTATTTGCTTCTGGATATGGGCTCTGGCACCATCAAGGTTAAAGCGACCCAGAAAAAGGTCAATGACGGAGAATGGTATCACGTGGATATCCAGCGGGATGGACGATCAGGTACCATATCGGTAAATAGCCGTCGCACGCCATTTACCGCCAGCGGAGAGAGTGAAATTCTCGATTTGGAAGGAGACATGTATCTGGGTGGCTTGCCAGAAAACAGAGCCGGTCTTATACTGCCCACGGAGTTGTGGACTGCCATGCTGAACTATGGCTATGTGGGATGCATCCGGGACCTGTTTATCGATGGCCGAAGCAAGGATATTCGACAGATAGCGGAGGCCCAGAATGGTGCCGGGATAAAGCCATCATGCACCAAGGTCAGCAGTAAACAGTGTGAGAGTTATCCATGCAGAAACAACGCTGTTTGCAAGGAAGGCTGGAATAGATTCATCTGTGATTGCACAGGCACTGGTTTCTGGTCTAGAACATGTGAAAGA

Function

GO:

id name namespace
GO:0051963 regulation of synapse assembly biological_process
GO:0051965 positive regulation of synapse assembly biological_process
GO:0007416 synapse assembly biological_process

KEGG:

id description
ko04514 Cell adhesion molecules
ko05033 Nicotine addiction

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000508 True 822 mRNA 0.49 2 17191781 17194116

Neighbor

gene id symbol gene type direction distance location
AMCG00000504 nrxn3,LOC101487700,LOC107751785,LOC102792091,LOC107676277 coding upstream 8701 17170250 ~ 17183080 (+)
AMCG00000503 NA coding upstream 85179 17104080 ~ 17106602 (+)
AMCG00000498 adck1 coding upstream 139947 17006469 ~ 17051834 (+)
AMCG00000502 NA coding upstream 247304 16944060 ~ 16944477 (+)
AMCG00000513 NA coding upstream 342534 16814843 ~ 16849247 (+)
AMCG00000509 nrxn3 coding downstream 17852 17211968 ~ 17253625 (+)
AMCG00000505 NA coding downstream 146656 17340772 ~ 17355823 (+)
AMCG00000507 NA coding downstream 183266 17377382 ~ 17400347 (+)
AMCG00000506 LOC107680771 coding downstream 233406 17427522 ~ 17430497 (+)
AMCG00000530 NA coding downstream 335601 17529717 ~ 17539409 (+)
G150689 NA non-coding upstream 469154 16681915 ~ 16722627 (+)
G150687 NA non-coding upstream 542207 16647905 ~ 16649574 (+)
G150686 NA non-coding upstream 544866 16645128 ~ 16646915 (+)
G150642 NA non-coding upstream 1000760 16190820 ~ 16191021 (+)
G150563 NA non-coding upstream 1572755 15615130 ~ 15619026 (+)
G150767 NA non-coding downstream 2361 17196477 ~ 17501853 (+)
G150831 NA non-coding downstream 461460 17655576 ~ 17702341 (+)
G150877 NA non-coding downstream 675182 17869298 ~ 17870290 (+)
G150886 NA non-coding downstream 755818 17949934 ~ 17971252 (+)
G150909 NA non-coding downstream 780209 17974325 ~ 17974800 (+)
G150750 NA other upstream 253499 16935993 ~ 16938282 (+)
AMCG00000514 NA other upstream 377416 16811453 ~ 16814365 (+)
AMCG00000443 esrrb,LOC106611051,LOC101473368,LOC100708924 other upstream 2247381 14931778 ~ 14944400 (+)
AMCG00000412 pgf,LOC102799665,LOC102204058,LOC106593515,LOC106611025 other upstream 3037941 14133138 ~ 14153840 (+)
G150069 NA other upstream 3499192 13690839 ~ 13692589 (+)
G150811 NA other downstream 351338 17545454 ~ 17548508 (+)
AMCG00000525 NA other downstream 554394 17748510 ~ 17759582 (+)
G150976 NA other downstream 959748 18153864 ~ 18159321 (+)
AMCG00000550 NA other downstream 1217327 18411443 ~ 18419576 (+)
AMCG00000573 NA other downstream 1295735 18489851 ~ 18530757 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location